Clone LD40505 Report

Search the DGRC for LD40505

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:405
Well:5
Vector:pOT2
Associated Gene/TranscriptU26-RA
Protein status:LD40505.pep: gold
Sequenced Size:3317

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
U26-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LD40505.complete Sequence

3317 bp assembled on 2011-02-17

GenBank Submission: BT126029.1

> LD40505.complete
ATTTAGTTTTTTTACTGATTAAATGTTGTGTTCTTAAAAACAACACGGCG
GCAGATTCGGCACCAGGACACAGTCATTCCCCTCCGCACTTGGTGCCTAT
GATTCCATCAGATATGGACCTAATTGAATCAACCGCGGAGCAGCCGGACA
AACTCTACAACATCAACAGAATCCGAGCGTTTAAAGATGTTCCCTTCCTG
ATAAGGCGCACGGAGTCCAAGGACACGATCGTGTCATACGCCGATGCTGC
AGATGAGATTCAAGTTTTGATGAATTTTCTGCGAAAGAACGGGGTCCCAG
ATGAGGCAGGAATTGCTCTACGAGTCACGGAGCACACGCCGGCCTCTTCT
CTTATGATTTTGGCGATCCTCAACAACAAGTGCCACTTTTTTCCCACGGA
TAAGATGATGCTGTCACAGGATCTATACTCACAGATGAGCACGGCCGGAG
TGGACTACCTCGTGGCCAACAAACATTTAACCGTTGCACCCTTGTACTTC
ACATTTCTGGGGAGCATCTTGGTGTTTAAGGAGGACTGTAGGCTATACAG
GGTAAAGTTGAAATCCGCTGATGAGACTGTACAATCCAAAAAGCCGTTAC
CAGCCAATATGTGCTACACAATCTCCACGACGGGCACTACGGGTAAGCCA
AAGCTCATACATGTGCCCTATGAATGCATAGCGCCCAACATAGTGGGGCT
CAGCCAAAAGTTAAACGTCTCCATGGCCGACATCATTTACCTTGGCACAC
CAATTACCTTCGATCCCTTCGTGGTGGAGTTCTTCCTAGCTCTTCAAAAT
GGTGCTACTTTACTGACCAGTCGTCACTCCATGAGGGACTCGCCAAGCAA
GGTGCTAAGTGCCCTCTTCCCCGACAACCTGGCCACACCGGGAATCACTG
TTCTGCAGATGACTCCTTCGCTGTTTCGGCAATTTGGTGCATCTTCCATC
AAAGATCGAGTGCTCAGCGGGTCCAGTTCATTGAGAGTACTGCTCCTTGG
TGGCGAACCATTTCCCAGCAATGTCGAGCTTGTTACTTGGATGCATCCAA
GTGTCCTGATGCAGAAGCACATATGCAACATATATGGAATCACGGAAATA
TCCTGTTGGAGCCTACTGCACATCGTTCAGTCATTACAATCTCCTGTGCC
TTTGGGCACGCCTATCGAAGAGGACACGGTTCTGCGGATTGAATCCGAAG
ACAATGAAACCTCACAGCAAGGAGAGCTGTTTCTGGGTAGTGTCAAGCGG
CGTTGCTATATCCCAGAAGTTGATGACCAGGCGAATGCTTCACAAGACGA
TTCAGGTATTTGTTTCAGGGCGACAGGAGATTTGGTAACACGACAGCAGG
ATGGCACATTGTTCTATAGTGAGAGATCGAACGATGTGGTAAAGCGAGCT
GGTAATCGCATTAGCTTGGGTTTAATCACCAGAAAAATTCAAAAATGTCT
GCCTAGCTCGGAACTGACTACTTGCCTATGGCTCGAAGATTTGCAGAAAC
TCATTTGCTGCATTCGAACCCTAGAGTCGAAGACTAGAGTTCAGCAGCGG
GTCCAAACCTTTGATATACTTTCCAAGGTATCGATTGCCGAGCAGCCAGA
TAGATTTGTCTATCTGCAACACTTTCCCTGCAACGTACACGGCAAGCTAG
ACAAGCAACAGCTTCTTAAAATGTGCATTCCCCTTGCACAACCAGCTCAG
CAGATATTAAAGAGCTATCTACACGATAGGCTAGAATGTGTGGAAGAGCC
TGATGATAGCGCTTCGAAAAAGCAGCGACTTGATGACGCCGCTCCCTGTG
GCTATGATTTGAGTTTTCGCCAGGCGGGTGGCACATCATTCCATGCCATC
ACCATTTGCCGAGAGATAGGTTTACAAATGTGCATCGATGATGAGCAACG
CCACTTGTTCGAAATGCTACTGGATGAGAACATTCCGTTGCGCACAGTGC
TAAGATTCTTGGACACAGCCAAGTTGGTGGCCAACAATATTAAGCGAAAG
AATGTTGAGACAGCGGTAGTTGTCTCAGCCTGCCAAAGTGGCTTGATTAT
TAAACGTATCGAACAGCCGGTCCTCAAGCTTCAGATCTACTGGAAGGTCA
ACTTCGAGAAGTGCATAGACTCCCCAGTGACCGAATACGAGGGACGCTTC
ATTTGCGTGGGCGCACATTCGAAAATCCTCCGGACGCTTAATCCCCAGAC
GGGCAGCGAATACAGTGTAGTGAAACTTCCCGAACGTATCGAGTGTAAGG
TGACGTTCCTCACCGAGCAGCTTGCCATGGTGGGCTGCTACGATGGATGT
CTCTACGGTTTCAATCCCCAAACCGGTAACATTGTATTTCGCGTTGGAAT
TGGTGGCTTAATTAAGTCGCAGCCCATGCTAACCGCCGATGGTCGCCGAA
TCATAGTATGCAGCTATGCCGATGACTACAATGTCTATTGCTTGTCAGCC
GAGCGGCAGGAGGTGCTGTGGTGCCTAAGGATCGGTGAAAAACCGATCTT
TGCGAGTCCTTTGGAGCTGCCGAGGGAACAGTCGCTGATAGTCTGCACTT
TGGACGGCAGCTACTCACGTGTGGCCATTACCGATGGCTCAGTGGAGTGG
ACGCAGAAATTTAGAGAACCAGTATTCTCCACACCTGTTCTTTTGGAATC
CGTATCCAATATTTTTCTAAGCGCGGAAGTGGCTGGGCGAGTCCATGCCT
GTCATGTGGGCAATGGCAAAATTCTGGCTACCTTCAGCACAGAAGGAAAC
ATTTTCTCTTCGCTAGTGGTCAAGACCCCACCGACTTTTATGGGACATTC
CTTTGCCATTTTTGGTTGCATAGACCAACATTTGTATTGCCTGCGATGCA
AAACCGGACCGGGTGGCAAATCTGTTGAGCTTGAGCTGCACTGGAAGGTC
GATGTGGGTGCACCCATATATGCCACGCCAACTTTGCTAACAGTGCAGCC
GAACGGTCTTTTGGTTTGGTGCGCCGCCACCGATGGACGCGTCATGCTGA
TAAACTTTAGAAATGGCGAGATTCAGTGGTCGGATAAACTACCCGGTCAA
GTCTTTTCCAGTGCATGCTTTATTGAGGACCTGCGTCGTGTTTTCGTGGG
ATGCCGAGACAATTTCCTTTACTGTCTGGGCATCTAGATATCAACTGCAA
CTGATACATTTCCATTTACAATCAACTTGTTGCTTAGCAGTAAGATAGAA
AAGTGTGCCTGATTAAATACATTAATTTACAGAGGAATACAGAATTTACT
TGTATAACTACAATTTAAGCACAATGTCCAGTTGTTAAAGTACATACATA
AAAAAAAAAAAAAAAAA

LD40505.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8445460..8446764 2723..1419 6435 99.5 Minus
chr2L 23010047 chr2L 8444825..8445400 3299..2724 2820 99.3 Minus
chr2L 23010047 chr2L 8446813..8447250 1421..984 2190 100 Minus
chr2L 23010047 chr2L 8448059..8448426 365..1 1685 97.8 Minus
chr2L 23010047 chr2L 8447660..8447998 703..365 1530 96.8 Minus
chr2L 23010047 chr2L 8447320..8447603 985..702 1420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8446565..8447869 2723..1419 6525 100 Minus
2L 23513712 2L 8445923..8446505 3306..2724 2900 99.8 Minus
2L 23513712 2L 8447918..8448355 1421..984 2190 100 Minus
2L 23513712 2L 8449158..8449522 365..1 1825 100 Minus
2L 23513712 2L 8448759..8449097 703..365 1695 100 Minus
2L 23513712 2L 8448425..8448708 985..702 1420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8446565..8447869 2723..1419 6525 100 Minus
2L 23513712 2L 8445923..8446505 3306..2724 2900 99.8 Minus
2L 23513712 2L 8447918..8448355 1421..984 2190 100 Minus
2L 23513712 2L 8449158..8449522 365..1 1825 100 Minus
2L 23513712 2L 8448759..8449097 703..365 1695 100 Minus
2L 23513712 2L 8448425..8448708 985..702 1420 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:39:45 has no hits.

LD40505.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:40:29 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8444825..8445400 2724..3299 99 <- Minus
chr2L 8445460..8446763 1420..2723 99 <- Minus
chr2L 8446815..8447248 986..1419 100 <- Minus
chr2L 8447320..8447601 704..985 100 <- Minus
chr2L 8447660..8447998 365..703 96 <- Minus
chr2L 8448060..8448426 1..364 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 10:21:07 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 1..3039 99..3137 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:47:33 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 1..3039 99..3137 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:06:06 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 1..3039 99..3137 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:21:07 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 50..3348 1..3299 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:47:33 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 55..3353 1..3299 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:06:06 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
U26-RA 55..3353 1..3299 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:29 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8445930..8446505 2724..3299 100 <- Minus
2L 8446565..8447868 1420..2723 100 <- Minus
2L 8447920..8448353 986..1419 100 <- Minus
2L 8448425..8448706 704..985 100 <- Minus
2L 8448759..8449097 365..703 100 <- Minus
2L 8449159..8449522 1..364 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:29 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8445930..8446505 2724..3299 100 <- Minus
2L 8446565..8447868 1420..2723 100 <- Minus
2L 8447920..8448353 986..1419 100 <- Minus
2L 8448425..8448706 704..985 100 <- Minus
2L 8448759..8449097 365..703 100 <- Minus
2L 8449159..8449522 1..364 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:29 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8445930..8446505 2724..3299 100 <- Minus
2L 8446565..8447868 1420..2723 100 <- Minus
2L 8447920..8448353 986..1419 100 <- Minus
2L 8448425..8448706 704..985 100 <- Minus
2L 8448759..8449097 365..703 100 <- Minus
2L 8449159..8449522 1..364 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:47:33 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8445930..8446505 2724..3299 100 <- Minus
arm_2L 8446565..8447868 1420..2723 100 <- Minus
arm_2L 8447920..8448353 986..1419 100 <- Minus
arm_2L 8448425..8448706 704..985 100 <- Minus
arm_2L 8448759..8449097 365..703 100 <- Minus
arm_2L 8449159..8449522 1..364 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:14 Download gff for LD40505.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8445930..8446505 2724..3299 100 <- Minus
2L 8446565..8447868 1420..2723 100 <- Minus
2L 8447920..8448353 986..1419 100 <- Minus
2L 8448425..8448706 704..985 100 <- Minus
2L 8448759..8449097 365..703 100 <- Minus
2L 8449159..8449522 1..364 100   Minus

LD40505.pep Sequence

Translation from 2 to 3136

> LD40505.pep
LVFLLIKCCVLKNNTAADSAPGHSHSPPHLVPMIPSDMDLIESTAEQPDK
LYNINRIRAFKDVPFLIRRTESKDTIVSYADAADEIQVLMNFLRKNGVPD
EAGIALRVTEHTPASSLMILAILNNKCHFFPTDKMMLSQDLYSQMSTAGV
DYLVANKHLTVAPLYFTFLGSILVFKEDCRLYRVKLKSADETVQSKKPLP
ANMCYTISTTGTTGKPKLIHVPYECIAPNIVGLSQKLNVSMADIIYLGTP
ITFDPFVVEFFLALQNGATLLTSRHSMRDSPSKVLSALFPDNLATPGITV
LQMTPSLFRQFGASSIKDRVLSGSSSLRVLLLGGEPFPSNVELVTWMHPS
VLMQKHICNIYGITEISCWSLLHIVQSLQSPVPLGTPIEEDTVLRIESED
NETSQQGELFLGSVKRRCYIPEVDDQANASQDDSGICFRATGDLVTRQQD
GTLFYSERSNDVVKRAGNRISLGLITRKIQKCLPSSELTTCLWLEDLQKL
ICCIRTLESKTRVQQRVQTFDILSKVSIAEQPDRFVYLQHFPCNVHGKLD
KQQLLKMCIPLAQPAQQILKSYLHDRLECVEEPDDSASKKQRLDDAAPCG
YDLSFRQAGGTSFHAITICREIGLQMCIDDEQRHLFEMLLDENIPLRTVL
RFLDTAKLVANNIKRKNVETAVVVSACQSGLIIKRIEQPVLKLQIYWKVN
FEKCIDSPVTEYEGRFICVGAHSKILRTLNPQTGSEYSVVKLPERIECKV
TFLTEQLAMVGCYDGCLYGFNPQTGNIVFRVGIGGLIKSQPMLTADGRRI
IVCSYADDYNVYCLSAERQEVLWCLRIGEKPIFASPLELPREQSLIVCTL
DGSYSRVAITDGSVEWTQKFREPVFSTPVLLESVSNIFLSAEVAGRVHAC
HVGNGKILATFSTEGNIFSSLVVKTPPTFMGHSFAIFGCIDQHLYCLRCK
TGPGGKSVELELHWKVDVGAPIYATPTLLTVQPNGLLVWCAATDGRVMLI
NFRNGEIQWSDKLPGQVFSSACFIEDLRRVFVGCRDNFLYCLGI*

LD40505.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14373-PA 1038 GF14373-PA 38..1038 48..1044 4024 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24071-PA 1036 GG24071-PA 11..1036 16..1044 5012 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10773-PA 1064 GH10773-PA 19..1064 17..1044 3362 59.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Aasdh-PC 1012 CG13401-PC 1..1012 33..1044 5274 100 Plus
Aasdh-PA 1012 CG13401-PA 1..1012 33..1044 5274 100 Plus
Aasdh-PD 323 CG13401-PD 1..299 33..331 1506 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17636-PA 1065 GI17636-PA 42..1065 36..1044 3475 62.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26185-PA 1050 GL26185-PA 37..1050 37..1044 3909 70.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28064-PA 1050 GA28064-PA 37..1050 37..1044 3913 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12913-PA 1007 GM12913-PA 1..1007 33..1044 5199 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22399-PA 1025 GD22399-PA 2..1025 19..1044 5208 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18201-PA 1039 GJ18201-PA 22..1039 17..1044 3455 62.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18378-PA 1104 GK18378-PA 93..1104 50..1044 3464 63 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10977-PA 1033 GE10977-PA 11..1033 16..1044 4980 89.7 Plus

LD40505.hyp Sequence

Translation from 2 to 3136

> LD40505.hyp
LVFLLIKCCVLKNNTAADSAPGHSHSPPHLVPMIPSDMDLIESTAEQPDK
LYNINRIRAFKDVPFLIRRTESKDTIVSYADAADEIQVLMNFLRKNGVPD
EAGIALRVTEHTPASSLMILAILNNKCHFFPTDKMMLSQDLYSQMSTAGV
DYLVANKHLTVAPLYFTFLGSILVFKEDCRLYRVKLKSADETVQSKKPLP
ANMCYTISTTGTTGKPKLIHVPYECIAPNIVGLSQKLNVSMADIIYLGTP
ITFDPFVVEFFLALQNGATLLTSRHSMRDSPSKVLSALFPDNLATPGITV
LQMTPSLFRQFGASSIKDRVLSGSSSLRVLLLGGEPFPSNVELVTWMHPS
VLMQKHICNIYGITEISCWSLLHIVQSLQSPVPLGTPIEEDTVLRIESED
NETSQQGELFLGSVKRRCYIPEVDDQANASQDDSGICFRATGDLVTRQQD
GTLFYSERSNDVVKRAGNRISLGLITRKIQKCLPSSELTTCLWLEDLQKL
ICCIRTLESKTRVQQRVQTFDILSKVSIAEQPDRFVYLQHFPCNVHGKLD
KQQLLKMCIPLAQPAQQILKSYLHDRLECVEEPDDSASKKQRLDDAAPCG
YDLSFRQAGGTSFHAITICREIGLQMCIDDEQRHLFEMLLDENIPLRTVL
RFLDTAKLVANNIKRKNVETAVVVSACQSGLIIKRIEQPVLKLQIYWKVN
FEKCIDSPVTEYEGRFICVGAHSKILRTLNPQTGSEYSVVKLPERIECKV
TFLTEQLAMVGCYDGCLYGFNPQTGNIVFRVGIGGLIKSQPMLTADGRRI
IVCSYADDYNVYCLSAERQEVLWCLRIGEKPIFASPLELPREQSLIVCTL
DGSYSRVAITDGSVEWTQKFREPVFSTPVLLESVSNIFLSAEVAGRVHAC
HVGNGKILATFSTEGNIFSSLVVKTPPTFMGHSFAIFGCIDQHLYCLRCK
TGPGGKSVELELHWKVDVGAPIYATPTLLTVQPNGLLVWCAATDGRVMLI
NFRNGEIQWSDKLPGQVFSSACFIEDLRRVFVGCRDNFLYCLGI*

LD40505.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
U26-PC 1012 CG13401-PC 1..1012 33..1044 5274 100 Plus
U26-PA 1012 CG13401-PA 1..1012 33..1044 5274 100 Plus
U26-PD 323 CG13401-PD 1..299 33..331 1506 99.3 Plus