Clone LD40565 Report

Search the DGRC for LD40565

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:405
Well:65
Vector:pOT2
Associated Gene/TranscriptCG7102-RA
Protein status:LD40565.pep: gold
Preliminary Size:2078
Sequenced Size:2089

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18591 2001-01-01 Release 2 assignment
CG7102 2001-01-01 Release 2 assignment
CG17973 2001-01-01 Release 2 assignment
CG7102 2001-07-04 Blastp of sequenced clone
CG7102 2003-01-01 Sim4 clustering to Release 3
CG7102 2008-04-29 Release 5.5 accounting
CG7102 2008-08-15 Release 5.9 accounting
CG7102 2008-12-18 5.12 accounting

Clone Sequence Records

LD40565.complete Sequence

2089 bp (2089 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051920

> LD40565.complete
CGCGAGAAGAACGACCAGCGGTCAAAGAAAATCAGATTTCGCGGAGGAAA
GGTCGAAATTGTTTGAAAAAACGCTTAGTTTGCAGCTGTGTAAAATAAAT
AGTGCACAATATTACTATTACAATAATATTTGTAGAAAAGTTATACCATT
TAATCTTGTTGCAATTGTTTCCCAGGCCATATTGTTTGCCAAATCGATTG
TGGCTTGGTGTCGGCCAAGAATTTTCAGCCAGGAACCGGTTTCTGCGCTC
CCACGAATCCAGCGATTAAAAGAGAGAAATAAAGAGAGTTTCCAAGTTGA
AAACATAAACAAACCCAATCGCAAAATAATAACAAAACCCAGTGCTTGCA
GAGGGACAAGGCAACACGTGCACTTCTGCACGAATGATTGCAATTTTTTG
AGCCCAAGAATACCGCACTTAATAATAAAAATCAATCATGAGTCTGCCCC
AGTTGATCGAGGATCTGCAGCGCCTTTCCGAGGATCAGGATAGTGCAGAT
GTGGTATTCATTTGTGGCAGAGATGAGCGCATATATGCCCATAGATTAAT
GCTAATGGCTCGGTGCAAGAGCTTCAAGACTGCGAAGAGAGGTGAAGTGT
GTCGAATTCCCGGATGCACAGTATCGCCAGCAGCCCCAGGAGCTTCAACT
CCGACCACCATACGATTACCACACGTGAATCCGGAACTATTCAGGCAGTT
CATCTTGTACGTTTACACCGCAAAGTTGGTTCTCCAGGACTCGCAAGTAT
TTCAAATGATGATATTGGCACAGGATATCGGTGTGGTTGAGCTACGAACT
GCCTGCGAGGATCACGTTATATCGACATTGTCGGTGGATAATGCCTGCAC
ATTTTTAACCGCCGTTATGGATATACACGAAAAAGCAGGTGCCAAATGCG
CTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGGGAAAATGCAAAT
GAGTGCGTTAAGACTAATGCCTTCCTTACTTTAACAAAGGATGCCATTAT
TAAGATTATTTCCTCAGACTATTTCTGCTTGGAAGAGGAGGAAGTGTGGC
GCTGCGTTTTATCCTGGGCCAAATACCAGGCAGGAGTCACCCAACCCACT
GCACATTGGACTGAGGAGGAGCGTGCTCGTGTCTGCCAACACTTAAGCGG
TGTAATGGGTCACGTGCGTCTGCTTCTCATCGATAGCCAAGTTTTCGCGG
AGGAAGTGGAACCTACAGGAGCTGTACCTATGGAACTATCCCTAGAACGA
TATCGCTATGCCGCTTTGCATGCCAATAAGATGATGGATAACGATAAGAG
ACTTCAGCCCCGCCTAGCTGTAGCGGTCAACATGTTTCCCGGATCCCAAA
TCCTGAAGAATGACAATCTGGCACTACAGACTGTTCTCAATAATTGGGTT
GGAGTGGGCAAGCAATCCTGGAGATTAGTTTTCCGAGCGTCCACTCATGG
CTACGATTCTGGAGCCTTTCATCGTTATTGCGACGGCGTGGCTCCTTGCA
TGGTTATTGGCTTGGGATCGCATGGAGAGATCAGTGGTGGTTATACGGAT
GTGGCGTGGGCCAAAACAAGCCGAAAGGGGGGATATGTTCAGTCCGAGCG
AGCCTTCCTCTTTGCCTTGAATCCAGCCAATGGGGAACAGCCGGTCAAGT
TTGATATTGTAAAGAAACCATATGCCATTTGCTATCATCCTGATTGCGGT
CCCATTTTTGGTGCTGGAGCCGATCTGCTCATTTCCAGCAACTGTAATAC
AAACATGGACTCATACTCGAATCTTCCGCATTCCTACGACGGAACCAACG
CTGCTCACCTGACACTTTTCGGGGACTATAACTTTACCATCACCGACTAT
GAGGTCTATACCCTTTCCTCGCCGGCAGGAAGTAGTAATAGTGGAGCAAA
TCACAGCAATAATCAGAACCTGAACCACTCAACAAACGGCCAAGCTCCTG
GGGTGCCCACAAAGGCAAAATACGATAGATACTAGAATTGGGGAAACAAC
TTGTAGTTGCATCAGCTATGCTGGCAATAAAACTATTTCCTTGAACGATC
CAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA

LD40565.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RA 2304 CG7102-RA 21..2074 1..2054 10270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7882948..7883618 1693..1023 3340 99.9 Minus
chr2L 23010047 chr2L 7885963..7886526 564..1 2775 99.5 Minus
chr2L 23010047 chr2L 7882505..7882865 2054..1694 1775 99.4 Minus
chr2L 23010047 chr2L 7885343..7885509 890..724 820 99.4 Minus
chr2L 23010047 chr2L 7885572..7885735 725..562 805 99.4 Minus
chr2L 23010047 chr2L 7883692..7883828 1022..886 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884581 1693..1023 3355 100 Minus
2L 23513712 2L 7886926..7887489 564..1 2820 100 Minus
2L 23513712 2L 7883468..7883828 2054..1694 1805 100 Minus
2L 23513712 2L 7886306..7886472 890..724 835 100 Minus
2L 23513712 2L 7886535..7886698 725..562 820 100 Minus
2L 23513712 2L 7884655..7884791 1022..886 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884581 1693..1023 3355 100 Minus
2L 23513712 2L 7886926..7887489 564..1 2820 100 Minus
2L 23513712 2L 7883468..7883828 2054..1694 1805 100 Minus
2L 23513712 2L 7886306..7886472 890..724 835 100 Minus
2L 23513712 2L 7886535..7886698 725..562 820 100 Minus
2L 23513712 2L 7884655..7884791 1022..886 685 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:00:49 has no hits.

LD40565.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:01:55 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7882508..7882865 1694..2051 99 <- Minus
chr2L 7882948..7883618 1023..1693 99 <- Minus
chr2L 7883692..7883825 889..1022 100 <- Minus
chr2L 7885345..7885507 726..888 99 <- Minus
chr2L 7885572..7885734 563..725 99 <- Minus
chr2L 7885965..7886526 1..562 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:56 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..1548 438..1985 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:01 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..1548 438..1985 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:56 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..1548 438..1985 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:31 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..1548 438..1985 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:38 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..1548 438..1985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:32 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:01 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:56 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RB 25..2075 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:31 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1..2051 1..2051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:38 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RB 25..2075 1..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:55 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883471..7883828 1694..2051 100 <- Minus
2L 7883911..7884581 1023..1693 100 <- Minus
2L 7884655..7884788 889..1022 100 <- Minus
2L 7886308..7886470 726..888 100 <- Minus
2L 7886535..7886697 563..725 100 <- Minus
2L 7886928..7887489 1..562 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:55 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883471..7883828 1694..2051 100 <- Minus
2L 7883911..7884581 1023..1693 100 <- Minus
2L 7884655..7884788 889..1022 100 <- Minus
2L 7886308..7886470 726..888 100 <- Minus
2L 7886535..7886697 563..725 100 <- Minus
2L 7886928..7887489 1..562 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:55 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883471..7883828 1694..2051 100 <- Minus
2L 7883911..7884581 1023..1693 100 <- Minus
2L 7884655..7884788 889..1022 100 <- Minus
2L 7886308..7886470 726..888 100 <- Minus
2L 7886535..7886697 563..725 100 <- Minus
2L 7886928..7887489 1..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:56 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7883471..7883828 1694..2051 100 <- Minus
arm_2L 7883911..7884581 1023..1693 100 <- Minus
arm_2L 7884655..7884788 889..1022 100 <- Minus
arm_2L 7886308..7886470 726..888 100 <- Minus
arm_2L 7886535..7886697 563..725 100 <- Minus
arm_2L 7886928..7887489 1..562 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:35 Download gff for LD40565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883471..7883828 1694..2051 100 <- Minus
2L 7883911..7884581 1023..1693 100 <- Minus
2L 7884655..7884788 889..1022 100 <- Minus
2L 7886308..7886470 726..888 100 <- Minus
2L 7886535..7886697 563..725 100 <- Minus
2L 7886928..7887489 1..562 100   Minus

LD40565.pep Sequence

Translation from 437 to 1984

> LD40565.pep
MSLPQLIEDLQRLSEDQDSADVVFICGRDERIYAHRLMLMARCKSFKTAK
RGEVCRIPGCTVSPAAPGASTPTTIRLPHVNPELFRQFILYVYTAKLVLQ
DSQVFQMMILAQDIGVVELRTACEDHVISTLSVDNACTFLTAVMDIHEKA
GAKCAASFMERCIIYIGENANECVKTNAFLTLTKDAIIKIISSDYFCLEE
EEVWRCVLSWAKYQAGVTQPTAHWTEEERARVCQHLSGVMGHVRLLLIDS
QVFAEEVEPTGAVPMELSLERYRYAALHANKMMDNDKRLQPRLAVAVNMF
PGSQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDG
VAPCMVIGLGSHGEISGGYTDVAWAKTSRKGGYVQSERAFLFALNPANGE
QPVKFDIVKKPYAICYHPDCGPIFGAGADLLISSNCNTNMDSYSNLPHSY
DGTNAAHLTLFGDYNFTITDYEVYTLSSPAGSSNSGANHSNNQNLNHSTN
GQAPGVPTKAKYDRY*

LD40565.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22826-PA 519 GF22826-PA 1..519 1..515 2589 92.1 Plus
Dana\GF15084-PA 1481 GF15084-PA 145..361 7..258 178 22.5 Plus
Dana\GF11400-PA 1322 GF11400-PA 131..339 74..290 167 21.7 Plus
Dana\GF24095-PA 668 GF24095-PA 102..318 7..257 158 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23496-PA 515 GG23496-PA 1..515 1..515 2751 97.7 Plus
Dere\GG18368-PA 751 GG18368-PA 50..266 9..261 191 22.6 Plus
Dere\GG15931-PA 623 GG15931-PA 59..275 7..257 157 25.3 Plus
Dere\GG20620-PA 1306 GG20620-PA 131..337 74..288 154 21 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11553-PA 537 GH11553-PA 15..537 3..515 2367 84.4 Plus
Dgri\GH10140-PA 1501 GH10140-PA 160..361 23..258 174 24.1 Plus
Dgri\GH23077-PA 1384 GH23077-PA 131..339 74..290 165 21.3 Plus
Dgri\GH17090-PA 624 GH17090-PA 60..276 7..257 156 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PB 515 CG7102-PB 1..515 1..515 2730 100 Plus
CG7102-PA 515 CG7102-PA 1..515 1..515 2730 100 Plus
BTBD9-PB 722 CG1826-PB 35..260 9..270 198 24.1 Plus
BTBD9-PA 722 CG1826-PA 35..260 9..270 198 24.1 Plus
gprs-PF 367 CG18471-PF 26..326 6..290 176 20.8 Plus
gprs-PB 1289 CG18471-PB 26..328 6..292 175 21 Plus
gprs-PE 323 CG18471-PE 26..312 6..280 171 20.7 Plus
gprs-PC 363 CG18471-PC 26..312 6..280 171 20.7 Plus
gprs-PD 380 CG18471-PD 124..339 67..290 169 20.6 Plus
gprs-PA 1302 CG18471-PA 124..341 67..292 168 20.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17043-PA 528 GI17043-PA 15..528 3..515 2343 84.9 Plus
Dmoj\GI22247-PA 1507 GI22247-PA 144..356 10..257 179 23.3 Plus
Dmoj\GI21146-PA 1319 GI21146-PA 131..337 74..288 164 21.5 Plus
Dmoj\GI11691-PA 617 GI11691-PA 60..276 7..257 158 25.3 Plus
Dmoj\GI21681-PA 751 GI21681-PA 49..267 9..263 157 22.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19482-PA 515 GL19482-PA 1..515 1..515 2543 90.9 Plus
Dper\GL26310-PA 358 GL26310-PA 18..212 5..217 209 27.3 Plus
Dper\GL19103-PA 356 GL19103-PA 33..221 5..212 174 23.2 Plus
Dper\GL26009-PA 369 GL26009-PA 20..244 6..266 174 23.9 Plus
Dper\GL16304-PA 220 GL16304-PA 11..198 6..212 171 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20103-PA 515 GA20103-PA 1..515 1..515 2534 90.7 Plus
Dpse\GA28812-PA 372 GA28812-PA 18..212 5..217 197 26.4 Plus
Dpse\GA25348-PA 419 GA25348-PA 33..221 5..212 181 23.7 Plus
Dpse\GA25382-PA 393 GA25382-PA 33..255 5..263 177 22.9 Plus
Dpse\GA20181-PA 1497 GA20181-PA 146..359 10..258 176 22.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13267-PA 515 GM13267-PA 1..515 1..515 2774 98.8 Plus
Dsec\GM11431-PA 309 GM11431-PA 35..253 9..263 183 23.2 Plus
Dsec\GM25560-PA 623 GM25560-PA 59..275 7..257 160 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22459-PA 515 GD22459-PA 1..515 1..515 2776 99 Plus
Dsim\GD14575-PA 623 GD14575-PA 59..275 7..257 159 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10045-PA 523 GJ10045-PA 15..523 3..515 2356 84.7 Plus
Dvir\GJ15860-PA 716 GJ15860-PA 42..258 9..261 168 22.3 Plus
Dvir\GJ20994-PA 1328 GJ20994-PA 131..321 74..276 162 21.7 Plus
Dvir\GJ11367-PA 624 GJ11367-PA 60..276 7..257 158 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23966-PA 501 GK23966-PA 15..480 3..476 2217 86.3 Plus
Dwil\GK18210-PA 1458 GK18210-PA 129..342 10..258 181 23.2 Plus
Dwil\GK22423-PA 548 GK22423-PA 9..202 5..217 175 25 Plus
Dwil\GK19118-PA 566 GK19118-PA 26..219 5..217 166 24.1 Plus
Dwil\GK15757-PA 679 GK15757-PA 88..304 7..257 160 25.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18325-PA 515 GE18325-PA 1..515 1..515 2769 98.4 Plus
Dyak\GE17855-PA 759 GE17855-PA 50..266 9..261 192 22.6 Plus
Dyak\GE22281-PA 623 GE22281-PA 59..275 7..257 160 25.3 Plus

LD40565.hyp Sequence

Translation from 437 to 1984

> LD40565.hyp
MSLPQLIEDLQRLSEDQDSADVVFICGRDERIYAHRLMLMARCKSFKTAK
RGEVCRIPGCTVSPAAPGASTPTTIRLPHVNPELFRQFILYVYTAKLVLQ
DSQVFQMMILAQDIGVVELRTACEDHVISTLSVDNACTFLTAVMDIHEKA
GAKCAASFMERCIIYIGENANECVKTNAFLTLTKDAIIKIISSDYFCLEE
EEVWRCVLSWAKYQAGVTQPTAHWTEEERARVCQHLSGVMGHVRLLLIDS
QVFAEEVEPTGAVPMELSLERYRYAALHANKMMDNDKRLQPRLAVAVNMF
PGSQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDG
VAPCMVIGLGSHGEISGGYTDVAWAKTSRKGGYVQSERAFLFALNPANGE
QPVKFDIVKKPYAICYHPDCGPIFGAGADLLISSNCNTNMDSYSNLPHSY
DGTNAAHLTLFGDYNFTITDYEVYTLSSPAGSSNSGANHSNNQNLNHSTN
GQAPGVPTKAKYDRY*

LD40565.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PB 515 CG7102-PB 1..515 1..515 2730 100 Plus
CG7102-PA 515 CG7102-PA 1..515 1..515 2730 100 Plus
BTBD9-PB 722 CG1826-PB 35..260 9..270 198 24.1 Plus
BTBD9-PA 722 CG1826-PA 35..260 9..270 198 24.1 Plus
gprs-PF 367 CG18471-PF 26..326 6..290 176 20.8 Plus