Clone LD40589 Report

Search the DGRC for LD40589

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:405
Well:89
Vector:pOT2
Associated Gene/TranscriptCG9839-RA
Protein status:LD40589.pep: gold
Preliminary Size:2055
Sequenced Size:2114

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9839 2001-01-01 Release 2 assignment
CG9839 2001-11-29 Blastp of sequenced clone
CG9839 2003-01-01 Sim4 clustering to Release 3
CG9839 2008-04-29 Release 5.5 accounting
CG9839 2008-08-15 Release 5.9 accounting
CG9839 2008-12-18 5.12 accounting

Clone Sequence Records

LD40589.complete Sequence

2114 bp (2114 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069639

> LD40589.complete
CACAACATACAGCACATGTGACTCGAGTGAGAGAGGACGAGTGACAGTGA
GGTCGAAGAAAAACACGCGTTGCTGCGGCTAAAATTTCCTCTGTATTTAC
ATTATTTGGAAGAGAAAACGCAGCCAAACGAAATGTCCAGCTCCGGAAGA
AAGCGCAAGCAGCAACTTAAGCCGCGTCAGGACGATCACCGGTCGCCGGT
GAAGCGACGCAGTGTGGACATCAAGTCGGAACCCTTGGACGGCTATCCGG
CGCTAGCAGACTACGATTTAAGTACGGCCGATATCAAGCCGGATCTCACT
GAACTCCAATTGCAGCTGGTGGCGGAGCAGCAGGCGGCCAGCAACACCAT
TCGCTTGGAATTGGAACAGCAAGAGAGTGATTCCGACGAGGATGGCTACT
CAGAGCTCGATTACCAAGCTGAAGATGTCTTCTGTCAGGACGATATGGAT
GACTACGATCCAGATTGGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTT
CAAATTTCCCATCCAGCAGAGTGGCCTGAAATTCGGACAACGCTTCCAGG
GACCACAGCACTACTTCAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTC
AGTTCCCTGGCCCAAAGCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAA
TCCCACAACTGCCGAAGAAATGGAAATCTTTATGGCGCTTTCCCTGCTTA
TGTGTGACCTGAAGCTGGAGCACCTATCGGATTACTGGAGCACTAACATG
TTTTACGGTCTCGTCGGATTCTCTGGGAAGATTCCTCTGGAACGGTATCA
GCAGCTGCTGCACTGCCTTAACTTTGATGCACCGCAGCTACAAGCGGGCA
GAGCCAAAGTGAAGAACTCTCTACTGCTAGACTTTATCAACGAGCGTATG
GAAGAGATATACATTTGTGGCCAGCAACTGGTGCTCAATGAACCTATCAC
TCTGTGGAAGGGTGCATTAAGATACCAGGATGAACTTCCAAACAAATTCC
GCACCAACGCACTACTGCTGCATATGCTAACTGAGCAGAGCGGTTTGGTG
GTGAAGATTCTACCGGAGATTGTGCGGAAGGAAGACGCACCGGCATGGGT
ACGCAATTCCCGGCAGTTGGTGGAGCACCGAAACAAGATTGTCCTGAAAC
TAATGGAGGGTTACCATGGAGGACGCACTGTGTACACCTCAAAGTTCTAT
GGAAGCTACGGCCTGGCTCAGGAGTTGGCCAAGAAAAGCACCTATTGCAC
TGGTCTGCTGGACAGGAATAGATATGGCAACAGTAAGGCACTGGTGCACC
AGCGGTTGGATTCCAACAGCATCTCCACCAGCTATGCCACTTCTCTGATG
ATGGCCAAATGGCGACGACGGGCAAAGAGCTTGTACTGCTTCAGCTCTGA
CTGCTTGGCCATTTATTCCAAGGAGATGGCCATGCAAAAGACAAATGCAA
AACCTAAGTTGATCCAGGAGCTCGAGTTTCAACTACGACCTGGAAACGAC
GGTCGCCACCACCTGATCCACTACCAAGCTGCCTGCAAGGAGCTGAAGGC
AAACATAAAGTTGACCATTTTCCTACTCAACATCCTCGTGTACAATGCCT
ATTTGCTATACTTTGCTAATGGCCAGAATGCGCGAGTCGGACATCTTAAA
AGTTACTCGGAGTTCCGGGTGATCATCATAAAGTCGCTTCTAAGAGAAGA
AGTGACGAACGAACCGGTAACTAGTATCCAGAAGCCAGAGACATATGAAC
GGTCAAAGAACAAGCCGGTGCCCGAGCCCAGGTTGAAGACCATTCTACAC
GAACCCATGCTTATCCAGCAGAACGGGAAGCCGGCCAAGAAAAACTGCCG
CTATTGCCACAAAGGCGGAATGCTGCAGTTCAGCAGGTACATGTGCAACA
CCTGTCCCGATAAGCCGGGTCTATGCCAGGAACCCTGCTTCCTTCTCTGG
CATGAGCAGCTCAAAAAAGTAATCAGACAGACAATTGGACGAAGTGAATA
AAAATGGATTATCATTCGTTAAGAGGAACAAATGTTTTTTGTTTAAAGTT
TCACACACAAGTTCTTTAAAATAAAAACTTATCCTTCCCCCTTTCAAAAA
AAAAAAAAAAAAAA

LD40589.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9839-RA 2205 CG9839-RA 98..2195 1..2098 10490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4629420..4631076 2095..439 8270 99.9 Minus
chr3R 27901430 chr3R 4631141..4631579 439..1 2195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8803468..8805127 2098..439 8300 100 Minus
3R 32079331 3R 8805192..8805630 439..1 2195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8544299..8545958 2098..439 8300 100 Minus
3R 31820162 3R 8546023..8546461 439..1 2195 100 Minus
Blast to na_te.dros performed 2019-03-16 02:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 535..658 2095..1977 131 63.3 Minus
TART-A 13424 TART-A 13424bp 11713..11836 2095..1977 131 63.3 Minus
Tc1-2 1644 Tc1-2 TC1-2 1644bp 295..350 2036..1981 118 67.9 Minus

LD40589.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:19:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4629420..4631075 440..2095 99 <- Minus
chr3R 4631141..4631579 1..439 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:58 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..1869 133..2001 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..1869 133..2001 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:27 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..1869 133..2001 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:22 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..1869 133..2001 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:05:28 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..1869 133..2001 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:31 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..2095 1..2095 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..2095 1..2095 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:27 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RB 92..2186 1..2095 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:22 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RA 1..2095 1..2095 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:05:28 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
CG9839-RB 92..2186 1..2095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8803471..8805126 440..2095 100 <- Minus
3R 8805192..8805630 1..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8803471..8805126 440..2095 100 <- Minus
3R 8805192..8805630 1..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:59 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8803471..8805126 440..2095 100 <- Minus
3R 8805192..8805630 1..439 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:27 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4629193..4630848 440..2095 100 <- Minus
arm_3R 4630914..4631352 1..439 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:50 Download gff for LD40589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8544302..8545957 440..2095 100 <- Minus
3R 8546023..8546461 1..439 100   Minus

LD40589.pep Sequence

Translation from 132 to 2000

> LD40589.pep
MSSSGRKRKQQLKPRQDDHRSPVKRRSVDIKSEPLDGYPALADYDLSTAD
IKPDLTELQLQLVAEQQAASNTIRLELEQQESDSDEDGYSELDYQAEDVF
CQDDMDDYDPDWSSQQTGSRLLFKFPIQQSGLKFGQRFQGPQHYFNQVLG
NRSKFFSSLAQSCNLKGGELKSNPTTAEEMEIFMALSLLMCDLKLEHLSD
YWSTNMFYGLVGFSGKIPLERYQQLLHCLNFDAPQLQAGRAKVKNSLLLD
FINERMEEIYICGQQLVLNEPITLWKGALRYQDELPNKFRTNALLLHMLT
EQSGLVVKILPEIVRKEDAPAWVRNSRQLVEHRNKIVLKLMEGYHGGRTV
YTSKFYGSYGLAQELAKKSTYCTGLLDRNRYGNSKALVHQRLDSNSISTS
YATSLMMAKWRRRAKSLYCFSSDCLAIYSKEMAMQKTNAKPKLIQELEFQ
LRPGNDGRHHLIHYQAACKELKANIKLTIFLLNILVYNAYLLYFANGQNA
RVGHLKSYSEFRVIIIKSLLREEVTNEPVTSIQKPETYERSKNKPVPEPR
LKTILHEPMLIQQNGKPAKKNCRYCHKGGMLQFSRYMCNTCPDKPGLCQE
PCFLLWHEQLKKVIRQTIGRSE*

LD40589.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16829-PA 612 GF16829-PA 1..612 1..612 2205 67.6 Plus
Dana\GF13642-PA 274 GF13642-PA 7..274 347..612 1001 70.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17417-PA 613 GG17417-PA 1..613 1..612 2999 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19333-PA 660 GH19333-PA 1..655 1..609 1632 52.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9839-PB 622 CG9839-PB 1..622 1..622 3266 100 Plus
CG9839-PA 622 CG9839-PA 1..622 1..622 3266 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23943-PA 659 GI23943-PA 1..653 1..612 1651 53.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12122-PA 625 GL12122-PA 1..625 1..612 2113 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22067-PA 625 GA22067-PA 1..625 1..612 2113 65.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26303-PA 612 GM26303-PA 1..612 1..612 3097 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20838-PA 388 GD20838-PA 1..388 1..388 1901 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23732-PA 647 GJ23732-PA 1..640 1..612 1759 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11821-PA 622 GK11821-PA 1..618 1..609 1768 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24817-PA 613 GE24817-PA 1..613 1..612 3064 91.8 Plus

LD40589.hyp Sequence

Translation from 132 to 2000

> LD40589.hyp
MSSSGRKRKQQLKPRQDDHRSPVKRRSVDIKSEPLDGYPALADYDLSTAD
IKPDLTELQLQLVAEQQAASNTIRLELEQQESDSDEDGYSELDYQAEDVF
CQDDMDDYDPDWSSQQTGSRLLFKFPIQQSGLKFGQRFQGPQHYFNQVLG
NRSKFFSSLAQSCNLKGGELKSNPTTAEEMEIFMALSLLMCDLKLEHLSD
YWSTNMFYGLVGFSGKIPLERYQQLLHCLNFDAPQLQAGRAKVKNSLLLD
FINERMEEIYICGQQLVLNEPITLWKGALRYQDELPNKFRTNALLLHMLT
EQSGLVVKILPEIVRKEDAPAWVRNSRQLVEHRNKIVLKLMEGYHGGRTV
YTSKFYGSYGLAQELAKKSTYCTGLLDRNRYGNSKALVHQRLDSNSISTS
YATSLMMAKWRRRAKSLYCFSSDCLAIYSKEMAMQKTNAKPKLIQELEFQ
LRPGNDGRHHLIHYQAACKELKANIKLTIFLLNILVYNAYLLYFANGQNA
RVGHLKSYSEFRVIIIKSLLREEVTNEPVTSIQKPETYERSKNKPVPEPR
LKTILHEPMLIQQNGKPAKKNCRYCHKGGMLQFSRYMCNTCPDKPGLCQE
PCFLLWHEQLKKVIRQTIGRSE*

LD40589.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9839-PB 622 CG9839-PB 1..622 1..622 3266 100 Plus
CG9839-PA 622 CG9839-PA 1..622 1..622 3266 100 Plus