Clone LD40680 Report

Search the DGRC for LD40680

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:406
Well:80
Vector:pOT2
Associated Gene/TranscriptCG30467-RA
Protein status:LD40680.pep: gold
Preliminary Size:4273
Sequenced Size:1765

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8185 2001-01-01 Release 2 assignment
CG30467 2001-07-04 Blastp of sequenced clone
CG30467 2003-01-01 Sim4 clustering to Release 3
CG30467 2008-04-29 Release 5.5 accounting
CG30467 2008-08-15 Release 5.9 accounting
CG30467 2008-12-18 5.12 accounting

Clone Sequence Records

LD40680.complete Sequence

1765 bp (1765 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051921

> LD40680.complete
AAAAGATCTTGTCCAAAATATATTGATTAGTACCACTGCCATTCTGCATT
CTGCCAAACGAACCCGTTAAACAGTTTGCCCAGACCCGGATCCAGATCGA
AATGCCCAAGGAAGAAGCGGAGCCATCGGCGAGTGGTCTTGCGGTGGCCG
CCAAGCAAAACGATGTGCCATCCGCGGAAAACTCGAATCACAAGGAAAGC
GACGCATACGCCTCCGCCTCTGCCAGCGCCAGTAGCGCCTCGACCACGCC
CCCACCCGCCCAGGAAGACGCCGAGGAGGCGGAGCTGCTGGAGCGTATGC
GCGGCGATGCAGTCGGCAACACCATGTACAGCAGTCGATTCATCCTGAAA
ACGGTGATGAGGGTGGGAGAATTACTGCGGCATTCAACACTGGATCAGCA
GCTGGAGGATGACCTGTGCAAAGTGTGGGACATGTCGGTGTCCCCCGAAG
TGGTCACACTGCTGCTGGAGAACGGAGCCATTGATCCGATCATGTACACC
CTGGTGGCGGGCTGTGAAGATGTGCGGCTCTACGAGATTCTTATCGGACT
GCTGGGCAATATGTGCGCCCAGGTGGAGTGCGCAGAGATATTGGCCTGTG
ACCGCTACACGTTGGAAACCCTGTTCAAGATGACATACTGCATGGACACC
GCCATGTTGATACAGCTGATGCGACTCTTTCAGTACATCATGGCCCATGT
GCTTAGCGGCAAGGAGAAGTTCGCTGTGAACTGGTACATCTGCTTTGCTG
CCTTTGAGAACTCCGCGCAGAACCTGGGCAGGATATTGCAACTGTCCGTT
AGCGATGAACTGCTAGTAGCTGCACTGAAGGCCACAAATGCTGTGCTGGC
CAGTTGCGCCTTGGTGGAGGAGGAAAACGCAAACTCCACGTTGAATCTAA
AGCCTTTTGCGGAGGTCTTTCTAGTGCCAGAACTCTGCGAGGGGGTCAAT
AGCGCGTTTTTGCGACTCATGCGCGATGATCAGACAAAATTGACCGACGA
GGAAGCTGGCGAGGACAACGAAGATGCAGAAGTGCCAGCGGCCCACGACA
GTGATGAAGATGCCGACGTCGGTTACGACTCGTGCGGACCAAAAATAACC
TGTGATGTGGAGATCATACAAACCTACCTCAATATATGCACCATTCTGGT
CCAACTGCCAGAGGCGCAGGCCTCCATGGATGTGTATGCACCCAGTATAG
TCAGTTGTCTAGCGCGAATACTGCAGTTTTTGCAGCAGCCTCTGCAACTC
ATTCCATTAGGCGAACGCCAGGAGGAGTATCTCGAGGATCTGGCGCACAT
TTGGAGTCGCCTGAAGTACTTCTATCACAAGGAGGCCTTCTTAAATCTTT
TGGAATTGTGGTATAGACTTAAACAGCACATTGACAACTACACGGGGGGA
AGTGATCCCGACGCCAATGAGTTCGAAGAGGACGAAGAGGAGGAGGATGA
CGCTCCAAAGGAGCAGTATGTGGAGAACGCCTTGAAGTTGCTGCGCCTGT
TGGCATGTATGGTGATAAAAGCGGAAAACTCGGATCTCCAAGAGATTGGC
GATGAAAAGGTGCAACTGTTTGTGTCTGCACTCAAAGCCGGAAAGGAAGA
AGCCATTTTCTCAAGGGCACTTGAATGCTTAAAGGATAAAGTGGCTAAGG
AGTCGGGCCAAGCCTAAACAACATGCCTCCATGATGGATAAAGCAAAAAT
GACTGAGATTGTAGCTTGCAGCACAATATATTCTTAACTTAGTTAAAAAA
AAAAAAAAAAAAAAA

LD40680.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30467-RA 1789 CG30467-RA 44..1788 1..1745 8725 100 Plus
CG8187-RA 1713 CG8187-RA 1250..1687 1745..1308 2190 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11425363..11426669 1..1307 6535 100 Plus
chr2R 21145070 chr2R 11426728..11427164 1308..1744 2185 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15538213..15539519 1..1307 6535 100 Plus
2R 25286936 2R 15539578..15540015 1308..1745 2190 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15539412..15540718 1..1307 6535 100 Plus
2R 25260384 2R 15540777..15541214 1308..1745 2190 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:47:41 has no hits.

LD40680.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:48:50 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11425363..11426669 1..1307 100 -> Plus
chr2R 11426728..11427164 1308..1744 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:00 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1566 102..1667 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:02 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1566 102..1667 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:12:25 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1566 102..1667 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:32 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1566 102..1667 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:54 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1566 102..1667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:34 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:02 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:12:25 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 39..1782 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:32 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:54 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
CG30467-RA 39..1782 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:50 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15538213..15539519 1..1307 100 -> Plus
2R 15539578..15540014 1308..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:50 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15538213..15539519 1..1307 100 -> Plus
2R 15539578..15540014 1308..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:50 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15538213..15539519 1..1307 100 -> Plus
2R 15539578..15540014 1308..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:12:25 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11425718..11427024 1..1307 100 -> Plus
arm_2R 11427083..11427519 1308..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:37 Download gff for LD40680.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15539412..15540718 1..1307 100 -> Plus
2R 15540777..15541213 1308..1744 100   Plus

LD40680.pep Sequence

Translation from 101 to 1666

> LD40680.pep
MPKEEAEPSASGLAVAAKQNDVPSAENSNHKESDAYASASASASSASTTP
PPAQEDAEEAELLERMRGDAVGNTMYSSRFILKTVMRVGELLRHSTLDQQ
LEDDLCKVWDMSVSPEVVTLLLENGAIDPIMYTLVAGCEDVRLYEILIGL
LGNMCAQVECAEILACDRYTLETLFKMTYCMDTAMLIQLMRLFQYIMAHV
LSGKEKFAVNWYICFAAFENSAQNLGRILQLSVSDELLVAALKATNAVLA
SCALVEEENANSTLNLKPFAEVFLVPELCEGVNSAFLRLMRDDQTKLTDE
EAGEDNEDAEVPAAHDSDEDADVGYDSCGPKITCDVEIIQTYLNICTILV
QLPEAQASMDVYAPSIVSCLARILQFLQQPLQLIPLGERQEEYLEDLAHI
WSRLKYFYHKEAFLNLLELWYRLKQHIDNYTGGSDPDANEFEEDEEEEDD
APKEQYVENALKLLRLLACMVIKAENSDLQEIGDEKVQLFVSALKAGKEE
AIFSRALECLKDKVAKESGQA*

LD40680.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11141-PA 525 GF11141-PA 1..523 1..521 1645 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20532-PA 520 GG20532-PA 1..520 1..521 2283 91 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19968-PA 532 GH19968-PA 1..531 1..521 1390 55.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30467-PA 521 CG30467-PA 1..521 1..521 2658 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20254-PA 532 GI20254-PA 31..531 9..521 1426 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20076-PA 531 GL20076-PA 1..531 1..521 1577 64.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15862-PA 528 GA15862-PA 1..528 1..521 1557 64.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21622-PA 521 GM21622-PA 1..521 1..521 2676 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11124-PA 509 GD11124-PA 1..509 1..521 2601 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20207-PA 530 GJ20207-PA 15..529 14..521 1404 57 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23027-PA 507 GK23027-PA 1..507 22..521 1540 61.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11716-PA 524 GE11716-PA 1..524 1..521 2309 90.1 Plus

LD40680.hyp Sequence

Translation from 101 to 1666

> LD40680.hyp
MPKEEAEPSASGLAVAAKQNDVPSAENSNHKESDAYASASASASSASTTP
PPAQEDAEEAELLERMRGDAVGNTMYSSRFILKTVMRVGELLRHSTLDQQ
LEDDLCKVWDMSVSPEVVTLLLENGAIDPIMYTLVAGCEDVRLYEILIGL
LGNMCAQVECAEILACDRYTLETLFKMTYCMDTAMLIQLMRLFQYIMAHV
LSGKEKFAVNWYICFAAFENSAQNLGRILQLSVSDELLVAALKATNAVLA
SCALVEEENANSTLNLKPFAEVFLVPELCEGVNSAFLRLMRDDQTKLTDE
EAGEDNEDAEVPAAHDSDEDADVGYDSCGPKITCDVEIIQTYLNICTILV
QLPEAQASMDVYAPSIVSCLARILQFLQQPLQLIPLGERQEEYLEDLAHI
WSRLKYFYHKEAFLNLLELWYRLKQHIDNYTGGSDPDANEFEEDEEEEDD
APKEQYVENALKLLRLLACMVIKAENSDLQEIGDEKVQLFVSALKAGKEE
AIFSRALECLKDKVAKESGQA*

LD40680.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30467-PA 521 CG30467-PA 1..521 1..521 2658 100 Plus