Clone LD40702 Report

Search the DGRC for LD40702

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:407
Well:2
Vector:pOT2
Associated Gene/TranscriptPapst2-RA
Protein status:LD40702.pep: gold
Preliminary Size:1651
Sequenced Size:1552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7853 2001-11-29 Blastp of sequenced clone
CG7853 2003-01-01 Sim4 clustering to Release 3
Papst2 2008-04-29 Release 5.5 accounting
Papst2 2008-08-15 Release 5.9 accounting
Papst2 2008-12-18 5.12 accounting

Clone Sequence Records

LD40702.complete Sequence

1552 bp (1552 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069640

> LD40702.complete
CTCAGTTCTAAGCTGACAAAAATAGTTTATTTGTGGTAAACAAACATTTA
GCCAGGGCAATTTGCACCCAACAGAAATCTCCACGCCGGCCCGTGATTAA
TGCAGCATCCGAGGAGGCATGACAAATCCGCACTTTAAACCGACAACTCC
GCGGACAGCGTGGCATTGAATTACACGGGCTCCCTGGAAATATAATCTTG
AAATAGCCACTATATAGTGTGTATATGTATATAGACACATCCGCTAGCAG
CAGAATGACCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAAT
CGGCGGGAAACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCT
CCGCCGGAACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCAC
AACTCAGTTCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGT
ACGGCTATCTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTAC
GGATGGTTCCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTT
GGTGGAGCGGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGA
ACATTGAGCCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTG
GCTGCTCTCACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTA
CCTGAACTATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCG
TGCTGGTGGGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGAC
TTTGCGGCAGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGC
CGACTCCCAGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTT
CGGGAGCGCTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCG
ATGCGGGAATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGG
CTTGGGTTTTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCT
TCAGCGGCTTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTAT
GGCTTCCTCTTTAGTTTGTCCGGCTATCTGGGCATTCAGTTTGTGCTGGC
TCTGGTGAGGAGTAGTGGTGCCCCCATAGCTGCCACAGTGACCACCGCCC
GCAAGGCTGTGACTATAGCCTTCTCCTTTGTGCTTTTCAGCAAGCCCTTT
ACCTTACAATATCTGTGGTCGGGCCTCATCGTTGTCCTGGGCATATATCT
CAATGTCTACAGCAAGAGGAACAAGCTGACGTTGGCCGACGTCCGGCAGA
GAATAAAGCAATTTGGAGCCAAGGTTGCCCGCTCACCGAGTCGCAAATTC
CTCATCGAAGTTTAGAACGATACCAAAAACACTCACATTTTAGTTGAATT
GGAAGCATGGGTTTTCTATAAGAAAACCATTAAATATAATTACTTAATTA
CATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

LD40702.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1737 Papst2-RA 156..1668 1..1513 7550 99.9 Plus
CG14057-RB 686 CG14057-RB 528..686 1513..1355 780 99.3 Minus
CG14057-RA 744 CG14057-RA 586..744 1513..1355 780 99.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17032306..17033381 1..1076 5365 99.9 Plus
chr3L 24539361 chr3L 17033682..17033929 1259..1506 1240 100 Plus
chr3L 24539361 chr3L 17033436..17033619 1075..1258 905 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17042842..17043917 1..1076 5380 100 Plus
3L 28110227 3L 17044218..17044472 1259..1513 1260 99.6 Plus
3L 28110227 3L 17043972..17044155 1075..1258 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17035942..17037017 1..1076 5380 100 Plus
3L 28103327 3L 17037318..17037572 1259..1513 1260 99.6 Plus
3L 28103327 3L 17037072..17037255 1075..1258 920 100 Plus
Blast to na_te.dros performed 2019-03-15 18:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 591..626 249..214 117 80.6 Minus

LD40702.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:16 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17032306..17033381 1..1076 99 -> Plus
chr3L 17033438..17033619 1077..1258 99 -> Plus
chr3L 17033682..17033929 1259..1506 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:02 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 225..1415 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:09 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 225..1415 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:37 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 225..1415 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:30 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 225..1415 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:19 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 225..1415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:42 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 41..1546 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:09 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 41..1546 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:37 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 46..1551 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:30 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 41..1546 1..1506 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:19 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 46..1551 1..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:16 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17042842..17043917 1..1076 100 -> Plus
3L 17043974..17044155 1077..1258 100 -> Plus
3L 17044218..17044465 1259..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:16 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17042842..17043917 1..1076 100 -> Plus
3L 17043974..17044155 1077..1258 100 -> Plus
3L 17044218..17044465 1259..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:16 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17042842..17043917 1..1076 100 -> Plus
3L 17043974..17044155 1077..1258 100 -> Plus
3L 17044218..17044465 1259..1506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:37 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17035942..17037017 1..1076 100 -> Plus
arm_3L 17037074..17037255 1077..1258 100 -> Plus
arm_3L 17037318..17037565 1259..1506 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:02 Download gff for LD40702.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17035942..17037017 1..1076 100 -> Plus
3L 17037074..17037255 1077..1258 100 -> Plus
3L 17037318..17037565 1259..1506 100   Plus

LD40702.pep Sequence

Translation from 224 to 1414

> LD40702.pep
MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILC
FDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQ
FGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTM
GLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMC
IGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPS
SEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSG
YLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSG
LIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEV*

LD40702.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10102-PA 389 GF10102-PA 2..389 8..396 1801 88.8 Plus
Dana\GF17812-PA 459 GF17812-PA 110..458 25..385 184 21.6 Plus
Dana\GF23157-PA 343 GF23157-PA 7..316 60..366 182 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13603-PA 386 GG13603-PA 1..386 11..396 1982 97.7 Plus
Dere\GG22340-PA 464 GG22340-PA 106..463 19..385 183 22.5 Plus
Dere\GG24421-PA 339 GG24421-PA 7..323 60..375 177 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16468-PA 409 GH16468-PA 5..409 9..396 1657 79 Plus
Dgri\GH18184-PA 341 GH18184-PA 7..302 60..354 167 27.1 Plus
Dgri\GH18093-PA 463 GH18093-PA 138..462 57..385 167 22.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-PA 396 CG7853-PA 1..396 1..396 2044 100 Plus
sll-PB 465 CG7623-PB 107..464 19..385 212 21.7 Plus
sll-PA 465 CG7623-PA 107..464 19..385 212 21.7 Plus
meigo-PB 338 CG5802-PB 7..321 60..371 210 25.6 Plus
meigo-PA 338 CG5802-PA 7..321 60..371 210 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12140-PA 318 GI12140-PA 7..318 85..396 1346 84 Plus
Dmoj\GI10138-PA 340 GI10138-PA 7..317 60..367 188 27.8 Plus
Dmoj\GI24592-PA 469 GI24592-PA 129..468 24..385 180 22.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16196-PA 392 GL16196-PA 1..392 11..396 1788 87.8 Plus
Dper\GL21514-PA 460 GL21514-PA 104..459 28..385 186 22.8 Plus
Dper\GL12272-PA 343 GL12272-PA 7..342 60..394 175 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20635-PA 392 GA20635-PA 1..392 11..396 1786 87.5 Plus
Dpse\GA20487-PA 460 GA20487-PA 104..459 28..385 186 22.8 Plus
Dpse\GA19140-PA 343 GA19140-PA 7..342 60..394 175 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25685-PA 386 GM25685-PA 1..386 11..396 1990 98.7 Plus
Dsec\GM15070-PA 339 GM15070-PA 7..322 60..372 180 25.5 Plus
Dsec\GM15246-PA 464 GM15246-PA 106..463 19..385 165 21.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14690-PA 386 GD14690-PA 1..386 11..396 1987 98.4 Plus
Dsim\GD19404-PA 339 GD19404-PA 7..322 60..372 180 25.5 Plus
Dsim\GD19171-PA 464 GD19171-PA 106..463 19..385 168 21.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13419-PA 402 GJ13419-PA 9..402 14..396 1729 84.5 Plus
Dvir\GJ23356-PA 339 GJ23356-PA 7..317 60..367 201 28.2 Plus
Dvir\GJ22657-PA 468 GJ22657-PA 98..451 2..366 178 20.5 Plus
Dvir\GJ14214-PA 349 GJ14214-PA 18..347 66..396 153 24.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20462-PA 395 GK20462-PA 1..395 11..396 1739 85.1 Plus
Dwil\GK14025-PA 343 GK14025-PA 7..341 60..393 178 24 Plus
Dwil\GK12079-PA 461 GK12079-PA 99..460 19..385 165 20.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19898-PA 386 GE19898-PA 1..386 11..396 1984 97.7 Plus
Dyak\GE25713-PA 339 GE25713-PA 7..322 60..372 181 25.8 Plus
Dyak\GE25483-PA 464 GE25483-PA 106..463 19..385 181 22.5 Plus

LD40702.hyp Sequence

Translation from 224 to 1414

> LD40702.hyp
MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILC
FDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQ
FGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTM
GLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMC
IGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPS
SEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSG
YLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSG
LIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEV*

LD40702.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-PA 396 CG7853-PA 1..396 1..396 2044 100 Plus
sll-PB 465 CG7623-PB 107..464 19..385 212 21.7 Plus
sll-PA 465 CG7623-PA 107..464 19..385 212 21.7 Plus
meigo-PB 338 CG5802-PB 7..321 60..371 210 25.6 Plus
meigo-PA 338 CG5802-PA 7..321 60..371 210 25.6 Plus