Clone LD40707 Report

Search the DGRC for LD40707

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:407
Well:7
Vector:pOT2
Associated Gene/Transcriptl(1)G0289-RA
Protein status:LD40707.pep: gold
Preliminary Size:2366
Sequenced Size:2341

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2221 2001-01-01 Release 2 assignment
CG2221 2001-11-29 Blastp of sequenced clone
CG2221 2003-01-01 Sim4 clustering to Release 3
l(1)G0289 2008-04-29 Release 5.5 accounting
l(1)G0289 2008-08-15 Release 5.9 accounting
l(1)G0289 2008-12-18 5.12 accounting

Clone Sequence Records

LD40707.complete Sequence

2341 bp (2341 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069641

> LD40707.complete
TTGCTCAGCATTCGTACTTTACTTTTCACTCGCAACGGCTGAAATAACGG
TTGAACAATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAATTGCGATCC
TTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCCGTGTTGCAT
CAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATATTGCCGCATA
CGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAAGACGAACCG
TGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGAGGCGCAGTG
TCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGCTGGCGGAGG
AGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGGCAGCGGGCG
GTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGCACTGGACAG
CGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATACCACTAGCCA
AATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGTCGGGCAATC
CCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACGGATCCCTCA
CCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGTGCCCGAGGA
AGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGAGCGTTGACT
TCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGACGAGGTGGCC
TCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCATGCTTTCGTC
GTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATTTCCCCTTCT
ACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGATTCCTTTAC
ACCGGCGAGTATGTCCACTCCTGGCTGGCGGCCACCCAGTACATTGCCCC
GCTGATGGCCAATTTCGACACGAGCATGTCCAACGACTCGTTTGTCCGAT
TGCATGACAATGGAACCGCCTTCACCGCCGTGTGGGAGAATGTGACGCTG
CAGGACAAGCCGGATTTTGGCAAGTTTACGTTCAGCGTGACCCTGTACCA
GAGTGGCGACATTGTTTTCGCATACATGCTGGTGCCCACGAACATCAACT
CCATCCAGGACAAGGAGCATCCGGTCAAGGTCGGCCTTTCCGACGCCTAC
ATTATCGACAAGCAACTATTCTTTGCCCGCCGAAAGACAATCTATGAGTA
CCACCGTGTCACGTTCCAGCAGCACGAGATCACCAACAACACCATCATCA
AGCTGGCGGCACAGCCCACCTGCCTTGGCTACAATGACTGCAATTCGTGC
ATCAACCACAACACTACGTTTACGTGCCTATGGTGCTCGGTGCTGAATCG
CTGCTCCACGGGTACCGACCGCAAAAAGCACGAGTGGCTCCAAATGGGAT
GTGAGGCTACCGCCATTCATACCAGTAGTTTGTGCCCGGCCCTCGGCGAT
AAGGGTAACAATGCTGCCGGCCAGGGTAAGAATGGTTCTGCGAACAGCGG
TGCCAGTGCCAATGGTGCGACAAATACCTCAACATCATCCAGCGGCTCAT
CCACGCCGGTCACGGAGCCCAGCGTGATGAGTACGAGGGCACCACATGCC
ACCGCTTACATTAAGCCGGGAGTGGATCACTCCAGTGATATCCATGCGGA
CGGAAAGGTCGGCAATGCCGAGCTATCGAAGGCGGAAGCGGACAACAAGA
ATGTGGGCGTAGCCTTTGGCTTCATGGTGCCCATCTGTCTGGTGTTCGCC
GTGACGCTGTGGCTCTTCTACGCGTACCGCAATCCGCACACCAAGAGCGG
CCAGCTGCTCATCCAGTTCCGTCCCAGCCAGTGGTCATGGAGGCGTGGCG
AGGCCCGCTACACGGCGGCCACGATACACATGTAGGAGGTGATTGCCGGA
GACGCAGGGTAGGAGGTACAGAGATCGCGAGACGTGGGAGGGAGCTGCAG
CTATACCGACGATGAATCAACCAACAAATCAACCAAACGAATTCTGATCC
CTGACGGAGCAGTATCGTGAACGCAAGGGGGCACTGCGAACTGAGAAGCA
ATCGCCATCAAATACGATTATTTTACAACATGGACATGGATCGACCGAGC
ACCGAGCATCAGGTGTAATCCTCCTATCTTTTAAAGACATGAATATTTGA
AACCCGTCTGTAATTGTGATGTGTTCCATGATGCGTCCACAATGTCAACC
AAAAGACCATTTTTTTGAACTGATTGTTGAGATTTAGCTCAGAACGCTGC
CGAAACCGAACAAAACAACAACTAAAAAAAAAAAAAAAAAA

LD40707.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289.d 3739 l(1)G0289.d 87..2420 1..2334 11655 99.9 Plus
l(1)G0289.g 4604 l(1)G0289.g 87..2420 1..2334 11655 99.9 Plus
l(1)G0289.e 5404 l(1)G0289.e 87..2420 1..2334 11655 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10250784..10251651 1013..146 4295 99.7 Minus
chrX 22417052 chrX 10248852..10249311 2323..1864 2285 99.8 Minus
chrX 22417052 chrX 10249583..10250002 1866..1447 2085 99.8 Minus
chrX 22417052 chrX 10250413..10250623 1222..1012 1055 100 Minus
chrX 22417052 chrX 10250195..10250346 1374..1223 760 100 Minus
chrX 22417052 chrX 10257619..10257763 145..1 725 100 Minus
chrX 22417052 chrX 10250059..10250133 1448..1374 360 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10359296..10360163 1013..146 4340 100 Minus
X 23542271 X 10357346..10357816 2334..1864 2340 99.8 Minus
X 23542271 X 10358086..10358505 1866..1447 2100 100 Minus
X 23542271 X 10358918..10359128 1222..1012 1055 100 Minus
X 23542271 X 10358700..10358851 1374..1223 760 100 Minus
X 23542271 X 10366124..10366268 145..1 725 100 Minus
X 23542271 X 10358562..10358636 1448..1374 375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10367394..10368261 1013..146 4340 100 Minus
X 23527363 X 10365444..10365914 2334..1864 2340 99.7 Minus
X 23527363 X 10366184..10366603 1866..1447 2100 100 Minus
X 23527363 X 10367016..10367226 1222..1012 1055 100 Minus
X 23527363 X 10366798..10366949 1374..1223 760 100 Minus
X 23527363 X 10374222..10374366 145..1 725 100 Minus
X 23527363 X 10366660..10366734 1448..1374 375 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:40:02 has no hits.

LD40707.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:45 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10250195..10250346 1223..1374 100 <- Minus
chrX 10250413..10250622 1013..1222 100 <- Minus
chrX 10248852..10249308 1867..2323 99 <- Minus
chrX 10249583..10250001 1448..1866 99 <- Minus
chrX 10250060..10250132 1375..1447 98 <- Minus
chrX 10250785..10251651 146..1012 99 <- Minus
chrX 10257619..10257763 1..145 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:03 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1..1878 58..1935 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:34 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1..1878 58..1935 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:55 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1..1878 58..1935 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:11 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1..1878 58..1935 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:55 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1..1878 58..1935 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:10:23 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 46..2368 1..2323 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:34 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 46..2368 1..2323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:55 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 6..2328 1..2323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:13 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 46..2368 1..2323 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:55 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 6..2328 1..2323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:45 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
X 10357357..10357813 1867..2323 100 <- Minus
X 10358086..10358504 1448..1866 100 <- Minus
X 10358563..10358635 1375..1447 100 <- Minus
X 10358700..10358851 1223..1374 100 <- Minus
X 10358918..10359127 1013..1222 100 <- Minus
X 10359297..10360163 146..1012 100 <- Minus
X 10366124..10366268 1..145 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:45 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
X 10357357..10357813 1867..2323 100 <- Minus
X 10358086..10358504 1448..1866 100 <- Minus
X 10358563..10358635 1375..1447 100 <- Minus
X 10358700..10358851 1223..1374 100 <- Minus
X 10358918..10359127 1013..1222 100 <- Minus
X 10359297..10360163 146..1012 100 <- Minus
X 10366124..10366268 1..145 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:45 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
X 10357357..10357813 1867..2323 100 <- Minus
X 10358086..10358504 1448..1866 100 <- Minus
X 10358563..10358635 1375..1447 100 <- Minus
X 10358700..10358851 1223..1374 100 <- Minus
X 10358918..10359127 1013..1222 100 <- Minus
X 10359297..10360163 146..1012 100 <- Minus
X 10366124..10366268 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:55 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10251390..10251846 1867..2323 100 <- Minus
arm_X 10252119..10252537 1448..1866 100 <- Minus
arm_X 10252596..10252668 1375..1447 100 <- Minus
arm_X 10252733..10252884 1223..1374 100 <- Minus
arm_X 10252951..10253160 1013..1222 100 <- Minus
arm_X 10253330..10254196 146..1012 100 <- Minus
arm_X 10260157..10260301 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:20 Download gff for LD40707.complete
Subject Subject Range Query Range Percent Splice Strand
X 10365455..10365911 1867..2323 100 <- Minus
X 10366184..10366602 1448..1866 100 <- Minus
X 10366661..10366733 1375..1447 100 <- Minus
X 10366798..10366949 1223..1374 100 <- Minus
X 10367016..10367225 1013..1222 100 <- Minus
X 10367395..10368261 146..1012 100 <- Minus
X 10374222..10374366 1..145 100   Minus

LD40707.pep Sequence

Translation from 57 to 1934

> LD40707.pep
MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPNIAAYGV
VPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVA
AETTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMA
PATKKPTLLGQSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEI
EAAVKNASLKESVDFHEYYNSVLYENKDEVASLWTELKATPENIMLSSSH
RRAMTVELKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLM
ANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSG
DIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARRKTIYEYHR
VTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS
TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGAS
ANGATNTSTSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGK
VGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQL
LIQFRPSQWSWRRGEARYTAATIHM*

LD40707.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19563-PA 628 GF19563-PA 1..628 1..625 1916 62.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18929-PA 615 GG18929-PA 1..615 1..625 2760 87.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12720-PA 668 GH12720-PA 1..668 1..625 1649 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-PC 625 CG2221-PC 1..625 1..625 3262 100 Plus
l(1)G0289-PB 625 CG2221-PB 1..625 1..625 3262 100 Plus
l(1)G0289-PA 625 CG2221-PA 1..625 1..625 3262 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15396-PA 656 GI15396-PA 1..656 1..625 1761 56.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26788-PA 624 GL26788-PA 1..624 1..625 1652 56.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15310-PA 645 GA15310-PA 1..645 1..625 1983 63.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11320-PA 624 GM11320-PA 1..624 1..625 2962 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16040-PA 624 GD16040-PA 1..624 1..625 2971 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14794-PA 656 GJ14794-PA 1..656 1..625 1695 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10263-PA 618 GK10263-PA 1..618 1..625 1859 58.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15399-PA 619 GE15399-PA 1..619 1..625 2784 87.2 Plus

LD40707.hyp Sequence

Translation from 57 to 1934

> LD40707.hyp
MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPNIAAYGV
VPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVA
AETTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMA
PATKKPTLLGQSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEI
EAAVKNASLKESVDFHEYYNSVLYENKDEVASLWTELKATPENIMLSSSH
RRAMTVELKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLM
ANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSG
DIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARRKTIYEYHR
VTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS
TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGAS
ANGATNTSTSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGK
VGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQL
LIQFRPSQWSWRRGEARYTAATIHM*

LD40707.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-PC 625 CG2221-PC 1..625 1..625 3262 100 Plus
l(1)G0289-PB 625 CG2221-PB 1..625 1..625 3262 100 Plus
l(1)G0289-PA 625 CG2221-PA 1..625 1..625 3262 100 Plus