Clone LD40728 Report

Search the DGRC for LD40728

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:407
Well:28
Vector:pOT2
Associated Gene/TranscriptRluA-2-RA
Protein status:LD40728.pep: gold
Preliminary Size:2088
Sequenced Size:2019

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6187 2001-01-01 Release 2 assignment
CG6187 2001-09-19 Blastp of sequenced clone
CG6187 2003-01-01 Sim4 clustering to Release 3
RluA-2 2008-04-29 Release 5.5 accounting
RluA-2 2008-08-15 Release 5.9 accounting
RluA-2 2008-12-18 5.12 accounting

Clone Sequence Records

LD40728.complete Sequence

2019 bp (2019 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058686

> LD40728.complete
TTTCGGCATAAAAACGTAATTTTCATGCGGTTTTTGCGGCAATTTAGGGA
CGTTTTTCGTTTGGCAAGTGGTGTTTGTGTTATGAATTAAAGTAACATTT
AACTCATTCAATTGAATCATCGCATAAAGCAGAGTGTTTTTGTGTTTGAA
ACTGAAATCTGCGCACGTGTTGACTAACTTGTTGTTATTATTATAGCGTT
GCTTAGATATTCTAGTAAATTGGCCGCAAATCAAAAACTATAAACAATTC
TCGTGGCTGTTGAAAATGGAGAGTTCCAAACTCTTGAGAAATGCACAAAC
CCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCACC
GCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCGG
GAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTCC
AGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAAA
CGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGAT
GACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAAC
GAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTATT
TTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCACG
TTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCCG
CGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCGG
GAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAAG
CACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTAC
TTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTGA
ATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAAC
ACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAAC
CATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGGA
CTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGTG
CAAAAGGAATACGTTTGCCGCGTTGAAGGACGCTTTCCAGATGGCATAGT
TGAATGCAATGAGAAAATCGACGTCGTGAGCTACAAAATAGGTGTTTGTA
AGGTTTCACCGAAGGGCAAGGACTGTAAGACCACATTTAAAAGAATCGGC
GAGGTGGGCAGTGATAGTATTGTTTTGTGCAAACCACTAACAGGACGAAT
GCACCAAATACGAGTGCATTTACAATTCTTGGGCTATCCCATTTCAAATG
ATCCTTTGTACAACCATGAAGTTTTCGGTCCATTGAAAGGAAGAGGAGGA
GATATCGGTGGAATAACCGAGGAACAGTTGATCAGTAACCTAATTAGCAT
TCATAATGCAGAAAACTGGTTGGGCTTGGAAGGAGATCAAATCGTATCAG
GGGAAATAAAAGACGTAGCAGCAAGTACTTCAGTAGTAGAGGCTCCCTCA
GTAGTTCAGGCTCCTATTAATAGTGAAACTGAAAAGCCTGTGATTTCAAA
AAACCTTGAACCAAGTAACGATGCTACTGCACAGATTGCCACCCAAACGT
GCTATGAGGAACCAGACAGGTCCTTTGATTCCAAGAAGACAACTTCGGAT
CCGCAATGTTCTGAATGCAAGATAAACTACAGAGACCCCGGCACAAAGGA
TCTCATAATGTACTTGCATGCATGGAAATACAAGGGCGTTGGTTGGGAGT
ACGAAACCGAATTGCCGGAATGGGCGTGTAATTCGAATATTGATTACGAT
AAAGTATAAAGGAAAAATTGATTGCAAACACGACGCTTTAGTAAAAAGAA
ATATTTTTACAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

LD40728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RA 2128 RluA-2-RA 47..2011 1..1965 9825 100 Plus
RluA-2.b 1857 RluA-2.b 80..1849 196..1965 8850 100 Plus
RluA-2.a 2087 RluA-2.a 47..1718 1..1672 8360 100 Plus
RluA-2.a 2087 RluA-2.a 1719..1999 1685..1965 1405 100 Plus
RluA-2.b 1857 RluA-2.b 18..80 1..63 315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10475944..10476415 1..472 2315 99.4 Plus
chr2L 23010047 chr2L 10481112..10481403 1382..1673 1460 100 Plus
chr2L 23010047 chr2L 10480175..10480398 659..882 1120 100 Plus
chr2L 23010047 chr2L 10480590..10480811 970..1191 1110 100 Plus
chr2L 23010047 chr2L 10480871..10481062 1192..1383 960 100 Plus
chr2L 23010047 chr2L 10479925..10480114 472..661 950 100 Plus
chr2L 23010047 chr2L 10481453..10481615 1673..1835 815 100 Plus
chr2L 23010047 chr2L 10481671..10481803 1833..1965 665 100 Plus
chr2L 23010047 chr2L 10480447..10480540 880..973 470 100 Plus
chr2L 23010047 chr2L 10463837..10463939 1068..966 230 81.6 Minus
chr2L 23010047 chr2L 10464126..10464218 973..881 210 81.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10477121..10477592 1..472 2360 100 Plus
2L 23513712 2L 10482284..10482575 1382..1673 1460 100 Plus
2L 23513712 2L 10481347..10481570 659..882 1120 100 Plus
2L 23513712 2L 10481762..10481983 970..1191 1110 100 Plus
2L 23513712 2L 10482043..10482234 1192..1383 960 100 Plus
2L 23513712 2L 10481097..10481286 472..661 950 100 Plus
2L 23513712 2L 10482625..10482787 1673..1835 815 100 Plus
2L 23513712 2L 10482843..10482975 1833..1965 665 100 Plus
2L 23513712 2L 10481619..10481712 880..973 470 100 Plus
2L 23513712 2L 10464997..10465099 1068..966 230 81.6 Minus
2L 23513712 2L 10465286..10465378 973..881 210 81.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10477121..10477592 1..472 2360 100 Plus
2L 23513712 2L 10482284..10482575 1382..1673 1460 100 Plus
2L 23513712 2L 10481347..10481570 659..882 1120 100 Plus
2L 23513712 2L 10481762..10481983 970..1191 1110 100 Plus
2L 23513712 2L 10482043..10482234 1192..1383 960 100 Plus
2L 23513712 2L 10481097..10481286 472..661 950 100 Plus
2L 23513712 2L 10482625..10482787 1673..1835 815 100 Plus
2L 23513712 2L 10482843..10482975 1833..1965 665 100 Plus
2L 23513712 2L 10481619..10481712 880..973 470 100 Plus
2L 23513712 2L 10464997..10465099 1068..966 230 81.5 Minus
2L 23513712 2L 10465286..10465378 973..881 210 81.7 Minus
2L 23513712 2L 10464466..10464542 1461..1385 175 81.8 Minus
Blast to na_te.dros performed 2019-03-16 11:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 2933..2970 218..180 120 82.1 Minus

LD40728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10481673..10481803 1835..1965 100   Plus
chr2L 10475944..10476415 1..472 99 -> Plus
chr2L 10479926..10480112 473..659 100 -> Plus
chr2L 10480176..10480398 660..882 100 -> Plus
chr2L 10480450..10480537 883..970 100 -> Plus
chr2L 10480591..10480811 971..1191 100 -> Plus
chr2L 10480871..10481061 1192..1382 100 -> Plus
chr2L 10481113..10481402 1383..1672 100 -> Plus
chr2L 10481453..10481614 1673..1834 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:06 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 266..1909 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RB 39..1752 196..1909 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:43:28 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 266..1909 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:20 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 266..1909 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:32 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 266..1909 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:37 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 8..1972 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 8..1972 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:43:28 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 49..2013 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:20 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 8..1972 1..1965 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:32 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 49..2013 1..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10481763..10481983 971..1191 100 -> Plus
2L 10482285..10482574 1383..1672 100 -> Plus
2L 10482043..10482233 1192..1382 100 -> Plus
2L 10477121..10477592 1..472 100 -> Plus
2L 10481098..10481284 473..659 100 -> Plus
2L 10481348..10481570 660..882 100 -> Plus
2L 10481622..10481709 883..970 100 -> Plus
2L 10482625..10482786 1673..1834 100 -> Plus
2L 10482845..10482975 1835..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10481763..10481983 971..1191 100 -> Plus
2L 10482285..10482574 1383..1672 100 -> Plus
2L 10482043..10482233 1192..1382 100 -> Plus
2L 10477121..10477592 1..472 100 -> Plus
2L 10481098..10481284 473..659 100 -> Plus
2L 10481348..10481570 660..882 100 -> Plus
2L 10481622..10481709 883..970 100 -> Plus
2L 10482625..10482786 1673..1834 100 -> Plus
2L 10482845..10482975 1835..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:10 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10481763..10481983 971..1191 100 -> Plus
2L 10482285..10482574 1383..1672 100 -> Plus
2L 10482043..10482233 1192..1382 100 -> Plus
2L 10477121..10477592 1..472 100 -> Plus
2L 10481098..10481284 473..659 100 -> Plus
2L 10481348..10481570 660..882 100 -> Plus
2L 10481622..10481709 883..970 100 -> Plus
2L 10482625..10482786 1673..1834 100 -> Plus
2L 10482845..10482975 1835..1965 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:43:28 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10482845..10482975 1835..1965 100   Plus
arm_2L 10482285..10482574 1383..1672 100 -> Plus
arm_2L 10477121..10477592 1..472 100 -> Plus
arm_2L 10481098..10481284 473..659 100 -> Plus
arm_2L 10481348..10481570 660..882 100 -> Plus
arm_2L 10481622..10481709 883..970 100 -> Plus
arm_2L 10481763..10481983 971..1191 100 -> Plus
arm_2L 10482043..10482233 1192..1382 100 -> Plus
arm_2L 10482625..10482786 1673..1834 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:26 Download gff for LD40728.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10482845..10482975 1835..1965 100   Plus
2L 10477121..10477592 1..472 100 -> Plus
2L 10481098..10481284 473..659 100 -> Plus
2L 10481348..10481570 660..882 100 -> Plus
2L 10481622..10481709 883..970 100 -> Plus
2L 10481763..10481983 971..1191 100 -> Plus
2L 10482043..10482233 1192..1382 100 -> Plus
2L 10482285..10482574 1383..1672 100 -> Plus
2L 10482625..10482786 1673..1834 100 -> Plus

LD40728.pep Sequence

Translation from 265 to 1908

> LD40728.pep
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKV*

LD40728.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15796-PA 524 GF15796-PA 1..524 1..547 2029 71.4 Plus
Dana\GF14093-PA 755 GF14093-PA 264..752 85..547 1659 65.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23644-PA 537 GG23644-PA 1..537 1..547 2658 91 Plus
Dere\GG10383-PA 721 GG10383-PA 228..718 85..547 1646 64.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13297-PA 562 GH13297-PA 1..546 1..537 1744 62.2 Plus
Dgri\GH13618-PA 753 GH13618-PA 256..739 77..539 1635 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-PD 547 CG6187-PD 1..547 1..547 2898 100 Plus
RluA-2-PA 547 CG6187-PA 1..547 1..547 2898 100 Plus
RluA-2-PC 543 CG6187-PC 1..543 1..547 2865 99.3 Plus
RluA-1-PC 739 CG31719-PC 248..731 87..539 1626 66.1 Plus
RluA-1-PB 739 CG31719-PB 248..731 87..539 1626 66.1 Plus
RluA-1-PA 739 CG31719-PA 248..731 87..539 1626 66.1 Plus
RluA-2-PE 219 CG6187-PE 1..205 1..205 1084 100 Plus
RluA-1-PD 378 CG31719-PD 248..367 87..206 469 71.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18161-PA 545 GI18161-PA 1..529 1..537 1782 64.5 Plus
Dmoj\GI20532-PA 798 GI20532-PA 296..782 77..537 1633 63.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19135-PA 478 GL19135-PA 22..476 85..547 1726 72 Plus
Dper\GL19017-PA 644 GL19017-PA 225..591 68..428 1458 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24957-PA 540 GA24957-PA 225..536 68..373 1240 72.8 Plus
Dpse\GA19422-PA 321 GA19422-PA 1..319 221..547 1234 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18469-PA 537 GM18469-PA 1..537 1..547 2717 93.1 Plus
Dsec\GM11650-PA 739 GM11650-PA 245..736 85..547 1670 65.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23709-PA 541 GD23709-PA 1..541 1..547 2740 93.4 Plus
Dsim\GD22253-PA 555 GD22253-PA 61..552 85..547 1654 65.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14588-PA 552 GJ14588-PA 1..541 1..545 1782 63.7 Plus
Dvir\GJ13872-PA 807 GJ13872-PA 301..791 77..537 1634 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15252-PA 532 GK15252-PA 4..522 2..537 1789 65.5 Plus
Dwil\GK15253-PA 761 GK15253-PA 264..751 85..537 1641 64.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18464-PA 939 GE18464-PA 534..939 132..547 1986 92.1 Plus
Dyak\GE13593-PA 738 GE13593-PA 245..735 85..547 1642 64.8 Plus

LD40728.hyp Sequence

Translation from 265 to 1908

> LD40728.hyp
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKV*

LD40728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-PD 547 CG6187-PD 1..547 1..547 2898 100 Plus
RluA-2-PA 547 CG6187-PA 1..547 1..547 2898 100 Plus
RluA-2-PC 543 CG6187-PC 1..543 1..547 2865 99.3 Plus
RluA-1-PC 739 CG31719-PC 248..731 87..539 1626 66.1 Plus
RluA-1-PB 739 CG31719-PB 248..731 87..539 1626 66.1 Plus