Clone LD40846 Report

Search the DGRC for LD40846

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:408
Well:46
Vector:pOT2
Associated Gene/TranscriptSsu72-RA
Protein status:LD40846.pep: gold
Preliminary Size:2332
Sequenced Size:2207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14216 2001-01-01 Release 2 assignment
CG14216 2001-09-19 Blastp of sequenced clone
CG14216 2003-01-01 Sim4 clustering to Release 3
CG14216 2008-04-29 Release 5.5 accounting
CG14216 2008-08-15 Release 5.9 accounting
CG14216 2008-12-18 5.12 accounting

Clone Sequence Records

LD40846.complete Sequence

2207 bp (2207 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060426

> LD40846.complete
TTTTGCCATCCCATCTCCAATTTGATGAACATATTTTTCGACGACTGCGA
TTGCAACGCACTGCCAAAGAGAAAGAGACATGACTGATCCTAGCAAGCTC
GCCGTCGCCGTAGTCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCA
CAACTTTCTGGCCAAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCG
AGCGCGTCAAGCTACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAG
TTTGGCACCAAATACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAA
GGAGTTCTACACACAGAACGGCCTGCTACACATGCTCGACCGCAATCGTC
GCATAAAGAAGTGCCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGAC
ATCATCGTCACTGTGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACAT
GGAGTCCATGGAATCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGG
ATGTGGTGGACAACGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACA
GACATGATAAACATGATGGCCAAGTCCACGGACCTGGACAACGACATCGA
CGAATTGATCCAGGAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACT
CGGTGCTCTTCTACTGACGACCGACGTCTGCTAACAGTTCGTGTCCAGCT
CCAGCACCAACACCAGACTCCCGTAGCCCCGACGCGCTCCAGCCGAGTCA
CTCGATCTTGTACCCCAGGGGCTGCGATCGCAGAGCATAGGACGTCGGGC
ATTGCGCGCAGCGCGTGCGGATCCTGGGTTCCGGATTGGTAGCCTAGCAT
ATAAGAATACTGTAAATAGAGAGGGGCCATCGCTGCAGCGAAAGCACATC
CAACAACGACCAGCACCCACACACTCGCATACTCCAAACACCTGATTCGT
AATCCACATCAACACCACACATGCAAGCAACTGGCTAATGAATTGGAATA
TAACACACAACCAATGACGACCATTTCCACACGGCTGCCCCCCAAAACCC
CTGTAGTAGTATGTGTACGTGTCCGTATTCCTTGTAATTTCGCCCGTCGA
CTGGGGGTCTTATCACAGGCTCTCGCTTCCCTCAGCTGGCGAAGGCGCCG
ACCATCTGACTCCGACCCGTTCTCCCGTTCGGCCGCTCTGCCGCTCTCTT
CGCCCGGCTTTGAGTCCGATTCGGACTCAGATTCGGATTCGATTCACATA
AAGTGAAATCTCGCATCGTGATTGTGTGAATGAGCATGCACGCCAGAGAG
CCACACAGGGGCGGAACGGTCTGGGCCCTCGCGGGCAGGGGCCGCGTTTT
TTAATTTTACACAGTTTTACCAATTGTTCAGACAGGGCAAACCCGACCGA
CCTTGGTTGGGGCTGTGCGTTTTAAACCAAAGGCAAAGGCCCGCAACGGG
CGCTAGCTTGCAATAGAAAATAAACAACAGGGGAGTTGTGTTCACTAAGG
ATTGGAATAAAAGTGCACGCCAATTTATGCCGGTTTCTTGTTGACGGCCT
GTGTCACATTTACCCTGCGACCTCAAACCTGCCTAGGTCTTCTCTTCGAC
GGAAATACCATTGATTACGTCTCATCCCACTGCTACCTCGGAGTTCACCT
TGATCGGACGCTGAGTTGGAAAGCCCTTATCACGGCTCCTGGAAACTGAA
AAAGCTGGACTGGGTTTTCCACTCAAGCAAACTCCATATGGCAACTAAGG
CTCTCTTAATAAAAGCCATATCCAAGTGTGGGGAACAGAGTATTAGAGTA
AGACAATCGGGAGCGGCACGACATGCATCTGGGCTACATGTGGTATGTGA
GCAATAGAGTTATTGAAGGGGACTTAAAAGGTGTCCCATTGGGGTACCAA
ATAAACTTCCATAGCAGCCGATATGCCGACAGACTTAGCGCCCACTTAAA
CACGTTAGCGAATGATCTTGTCGACCCTATTTCCCTCCGATGTCTGAAGA
GAATACATCCCCATGAACTCCTTACACGTAATATAGCATAATCTCTCCTC
GGTACATTTGTATACACTATAATTAAGGAACAGAATCCATAATATCTTTT
AAGCTACACATTAGGTTAACTTCAGAAGGAACTGATCGATTCCTACTGAC
TAATGAATAATAATAAATGATTTAAACTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAA

LD40846.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14216-RA 2329 CG14216-RA 104..2292 1..2189 10930 99.9 Plus
CG14216.a 2186 CG14216.a 1..2186 1..2189 10860 99.8 Plus
klett.k 3134 klett.k 2958..3099 1545..1686 620 95.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19554046..19555661 565..2180 8080 100 Plus
chrX 22417052 chrX 19553362..19553667 1..306 1530 100 Plus
chrU 10048995 chrU 1859257..1859640 2177..1793 1395 91.4 Minus
chr3R 27901430 chr3R 26293..26679 2180..1793 1395 91.2 Minus
chr2RHet 3288813 chr2RHet 3023836..3024213 1793..2171 1335 90.8 Plus
chr2RHet 3288813 chr2RHet 3047746..3048123 1793..2171 1335 90.8 Plus
chr2RHet 3288813 chr2RHet 3031804..3032181 1793..2171 1320 90.5 Plus
chr2RHet 3288813 chr2RHet 3039778..3040155 1793..2171 1320 90.5 Plus
chr3LHet 2555433 chr3LHet 472972..473350 1793..2172 1310 90.3 Plus
chr3LHet 2555433 chr3LHet 761826..762204 2172..1793 1310 90.3 Minus
chrU 10048995 chrU 9939529..9939906 2171..1793 1305 90.2 Minus
chrX 22417052 chrX 19553730..19553988 307..565 1295 100 Plus
chr3LHet 2555433 chr3LHet 2266852..2267229 1795..2179 1285 90.1 Plus
chr3RHet 2517486 chr3RHet 636522..636910 2180..1793 1250 89.2 Minus
chrU 10048995 chrU 410640..411001 2180..1803 1155 88.9 Minus
chr2RHet 3288813 chr2RHet 1724445..1724817 2180..1793 1115 87.6 Minus
chrU 10048995 chrU 5999329..5999606 2180..1903 1105 93.2 Minus
chrX 22417052 chrX 2319946..2320303 1793..2153 1085 88.6 Plus
chrU 10048995 chrU 6765700..6766072 1793..2176 1050 86.7 Plus
chr3LHet 2555433 chr3LHet 1495232..1495566 2119..1789 1040 88.7 Minus
chr3L 24539361 chr3L 23028237..23028603 1793..2154 990 87 Plus
chr3L 24539361 chr3L 24221377..24221718 1816..2173 985 86.3 Plus
chr2L 23010047 chr2L 22088493..22088760 2178..1915 900 89.9 Minus
chrU 10048995 chrU 6106938..6107184 2040..1793 800 89.1 Minus
chr2L 23010047 chr2L 22966010..22966239 1545..1771 800 91.8 Plus
chrU 10048995 chrU 1859707..1859949 1771..1545 775 88.9 Minus
chr2RHet 3288813 chr2RHet 1959984..1960205 2179..1954 775 91.6 Minus
chrX 22417052 chrX 5765994..5766185 2178..1987 765 93.2 Minus
chr2R 21145070 chr2R 1368023..1368263 1771..1547 765 88.8 Minus
chrX 22417052 chrX 21489318..21489560 1771..1545 760 88.5 Minus
chrU 10048995 chrU 6765391..6765633 1545..1771 745 88.1 Plus
chr2RHet 3288813 chr2RHet 1724884..1725126 1771..1545 745 88.1 Minus
chrU 10048995 chrU 5478814..5479079 2178..1899 735 85 Minus
chr3L 24539361 chr3L 24396398..24396663 1899..2178 735 85 Plus
chr3L 24539361 chr3L 24384041..24384306 2178..1899 735 85 Minus
chr3LHet 2555433 chr3LHet 762271..762511 1771..1545 720 89.3 Minus
chrU 10048995 chrU 5062937..5063208 2079..1793 705 84.7 Minus
chrU 10048995 chrU 411053..411295 1771..1545 700 86.8 Minus
chr3R 27901430 chr3R 1821237..1821403 2177..2011 670 93.4 Minus
chr3LHet 2555433 chr3LHet 1259559..1259799 2035..1793 650 86.4 Minus
chr3L 24539361 chr3L 24221071..24221212 1545..1686 650 97.2 Plus
chr2R 21145070 chr2R 20937587..20937775 2173..1974 650 89.5 Minus
chr3LHet 2555433 chr3LHet 472666..472905 1545..1771 640 87.2 Plus
chr2R 21145070 chr2R 226511..226719 1579..1771 620 87.6 Plus
chr2L 23010047 chr2L 22458412..22458627 2180..1949 610 86.2 Minus
chrX 22417052 chrX 22120091..22120321 1557..1771 580 84.4 Plus
chr2L 23010047 chr2L 21649197..21649399 1793..2000 580 87.5 Plus
chrX 22417052 chrX 6844284..6844428 2117..1973 575 93.1 Minus
chr3L 24539361 chr3L 23808883..23809055 2017..1845 565 88.4 Minus
chr2RHet 3288813 chr2RHet 1555303..1555531 1558..1771 525 83.9 Plus
chr3L 24539361 chr3L 24184597..24184737 1545..1686 525 93 Plus
chr3RHet 2517486 chr3RHet 678396..678723 2151..1805 515 81.1 Minus
chrX 22417052 chrX 21489024..21489153 2076..1947 485 91.5 Minus
chr2RHet 3288813 chr2RHet 3157874..3157987 1992..2105 480 94.7 Plus
chrU 10048995 chrU 6306452..6306567 2065..2180 475 94 Plus
chr3R 27901430 chr3R 1380294..1380427 2178..2038 475 90.8 Minus
chr3R 27901430 chr3R 1380428..1380549 2007..1886 475 92.6 Minus
chr2L 23010047 chr2L 21335674..21335849 1612..1771 470 85.8 Plus
chr3L 24539361 chr3L 23599480..23599652 1971..2143 465 86.9 Plus
chr3LHet 2555433 chr3LHet 1495716..1495853 1683..1545 450 89.9 Minus
chr3L 24539361 chr3L 23798383..23798521 1550..1684 450 89.9 Plus
chr3L 24539361 chr3L 23890328..23890466 1550..1684 450 89.9 Plus
chr3L 24539361 chr3L 23778959..23779065 1656..1550 445 94.4 Minus
chr3L 24539361 chr3L 23809140..23809348 1771..1579 440 81.8 Minus
chr3L 24539361 chr3L 23325947..23326073 2042..2171 420 90 Plus
chrU 10048995 chrU 5063275..5063455 1771..1607 390 82.3 Minus
chr2R 21145070 chr2R 226918..227037 2011..2131 390 90.1 Plus
chrX 22417052 chrX 21489147..21489261 1908..1793 380 90.5 Minus
chr3LHet 2555433 chr3LHet 2220850..2220955 2033..2135 375 92.5 Plus
chr3L 24539361 chr3L 11828640..11828787 2019..1867 370 84.3 Minus
chrX 22417052 chrX 22120506..22120648 2012..2151 365 85.3 Plus
chrU 10048995 chrU 6106835..6106937 2180..2078 350 89.3 Minus
chr3L 24539361 chr3L 24255560..24255658 2178..2073 345 90.6 Minus
chr2R 21145070 chr2R 226786..226914 1793..1922 345 86.2 Plus
chr2RHet 3288813 chr2RHet 1555598..1555780 1793..1990 335 80.3 Plus
chrU 10048995 chrU 1941131..1941223 2173..2081 330 90.3 Minus
chrU 10048995 chrU 5528932..5529024 2081..2173 330 90.3 Plus
chrU 10048995 chrU 4949605..4949675 1616..1686 325 97.2 Plus
chr3LHet 2555433 chr3LHet 1259866..1259951 1771..1686 325 91.9 Minus
chr3L 24539361 chr3L 23599355..23599433 1692..1770 320 93.7 Plus
chr3R 27901430 chr3R 26746..26821 1771..1696 305 93.4 Minus
chr3L 24539361 chr3L 23808770..23808884 2151..2040 300 86.1 Minus
chr3RHet 2517486 chr3RHet 1412808..1412877 1545..1614 290 94.3 Plus
chrYHet 347003 chrYHet 162788..162905 1975..1857 290 84.9 Minus
chrU 10048995 chrU 4949821..4949937 1921..1804 285 84.7 Minus
chr2RHet 3288813 chr2RHet 1557818..1557919 1988..2095 265 85.2 Plus
chr3RHet 2517486 chr3RHet 637133..637185 1597..1545 265 100 Minus
chr3L 24539361 chr3L 24184927..24185011 1841..1925 260 87.1 Plus
chr3R 27901430 chr3R 2886689..2886755 2165..2099 245 91 Minus
chr2L 23010047 chr2L 15202829..15202894 2163..2098 240 90.9 Minus
chr3LHet 2555433 chr3LHet 2220766..2220848 1917..1999 235 85.5 Plus
chr2RHet 3288813 chr2RHet 3157986..3158034 2132..2180 215 95.9 Plus
chr3RHet 2517486 chr3RHet 636977..637067 1771..1686 210 84.6 Minus
chr3L 24539361 chr3L 24184758..24184842 1690..1771 210 85.9 Plus
chr2L 23010047 chr2L 21823831..21823879 2180..2132 200 93.9 Minus
chr3LHet 2555433 chr3LHet 1259967..1260009 1686..1644 185 95.3 Minus
chr3RHet 2517486 chr3RHet 26766..26844 1692..1770 185 82.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19665251..19666875 565..2189 8110 99.9 Plus
X 23542271 X 19664567..19664872 1..306 1530 100 Plus
3R 32079331 3R 593271..593667 2190..1793 1445 91.5 Minus
3R 32079331 3R 4200563..4200957 2188..1793 1420 91.2 Minus
3L 28110227 3L 27684043..27684420 2171..1793 1335 90.8 Minus
3L 28110227 3L 27709350..27709727 2171..1793 1335 90.8 Minus
3L 28110227 3L 27692011..27692388 2171..1793 1320 90.5 Minus
3L 28110227 3L 27701384..27701761 2171..1793 1320 90.5 Minus
3L 28110227 3L 24989644..24990022 1793..2172 1310 90.3 Plus
3L 28110227 3L 25276347..25276725 2172..1793 1310 90.3 Minus
3L 28110227 3L 27159527..27159912 1795..2187 1310 90.1 Plus
X 23542271 X 19664935..19665193 307..565 1295 100 Plus
3R 32079331 3R 868674..869069 1793..2187 1285 89.4 Plus
3R 32079331 3R 2434946..2435295 2145..1795 1285 91.7 Minus
3R 32079331 3R 2440585..2440934 2145..1795 1270 91.5 Minus
3R 32079331 3R 2448400..2448749 2145..1795 1240 90.9 Minus
3R 32079331 3R 1873072..1873444 2191..1803 1210 89.2 Minus
2R 25286936 2R 2949384..2949773 2197..1793 1200 88.1 Minus
Y 3667352 Y 796705..796996 1903..2194 1145 92.8 Plus
X 23542271 X 2426071..2426455 1793..2187 1115 87.8 Plus
U 3151297 U 2829818..2830190 1793..2176 1050 86.7 Plus
3L 28110227 3L 26128249..26128583 2119..1789 1040 88.7 Minus
3L 28110227 3L 23039319..23039685 1793..2154 990 87 Plus
3L 28110227 3L 24232469..24232810 1816..2173 985 86.3 Plus
2L 23513712 2L 22089931..22090207 2187..1915 915 89.5 Minus
X 23542271 X 5873629..5873834 2192..1987 805 92.7 Minus
U 3151297 U 2331769..2332015 2040..1793 800 89.1 Minus
2L 23513712 2L 23074775..23075004 1545..1771 800 91.8 Plus
2R 25286936 2R 3176838..3177066 2186..1954 795 91.4 Minus
3R 32079331 3R 593734..593976 1771..1545 775 88.9 Minus
2R 25286936 2R 5480654..5480894 1771..1547 765 88.8 Minus
X 23542271 X 21624160..21624402 1771..1545 760 88.5 Minus
3L 28110227 3L 24395131..24395406 2188..1899 755 84.8 Minus
3L 28110227 3L 24407498..24407773 1899..2188 755 84.8 Plus
U 3151297 U 923154..923429 2188..1899 755 84.8 Minus
2R 25286936 2R 2949840..2950082 1771..1545 745 88.1 Minus
U 3151297 U 2829509..2829751 1545..1771 745 88.1 Plus
3L 28110227 3L 25276792..25277032 1771..1545 720 89.3 Minus
Y 3667352 Y 326704..326975 1793..2079 705 84.7 Plus
3R 32079331 3R 1873496..1873738 1771..1545 700 86.8 Minus
2L 23513712 2L 22567143..22567382 2204..1949 700 86.7 Minus
3R 32079331 3R 5995614..5995789 2186..2011 685 92.6 Minus
Y 3667352 Y 326395..326637 1545..1771 670 86 Plus
3L 28110227 3L 24232163..24232304 1545..1686 650 97.2 Plus
3L 28110227 3L 25876900..25877140 2035..1793 650 86.4 Minus
2R 25286936 2R 25051666..25051854 2173..1974 650 89.5 Minus
3L 28110227 3L 24989338..24989577 1545..1771 640 87.2 Plus
2R 25286936 2R 4338952..4339160 1579..1771 620 87.6 Plus
2L 23513712 2L 21650694..21650896 1793..2000 580 87.5 Plus
X 23542271 X 6952129..6952273 2117..1973 575 93.1 Minus
X 23542271 X 22724105..22724335 1557..1771 565 84 Plus
3L 28110227 3L 23819983..23820155 2017..1845 565 88.4 Minus
3L 28110227 3L 24195690..24195830 1545..1686 525 93 Plus
2R 25286936 2R 2780226..2780454 1558..1771 525 83.9 Plus
3R 32079331 3R 828898..829225 1805..2151 515 81.1 Plus
3R 32079331 3R 2448818..2449002 1771..1603 515 86.5 Minus
3L 28110227 3L 11837807..11837957 2019..1869 515 89.4 Minus
3R 32079331 3R 5554623..5554768 2190..2038 505 90.2 Minus
Y 3667352 Y 3649619..3649739 2065..2185 500 94.2 Plus
U 3151297 U 3096148..3096268 2065..2185 500 94.2 Plus
X 23542271 X 21623866..21623995 2076..1947 485 91.5 Minus
2R 25286936 2R 3921660..3921773 1992..2105 480 94.7 Plus
3R 32079331 3R 5554769..5554890 2007..1886 475 92.6 Minus
2L 23513712 2L 21337151..21337326 1612..1771 470 85.8 Plus
3L 28110227 3L 23610568..23610740 1971..2143 465 86.9 Plus
3L 28110227 3L 23337029..23337175 2042..2193 450 89.5 Plus
3L 28110227 3L 23809483..23809621 1550..1684 450 89.9 Plus
3L 28110227 3L 23901425..23901563 1550..1684 450 89.9 Plus
3L 28110227 3L 26128733..26128870 1683..1545 450 89.9 Minus
3L 28110227 3L 23790060..23790166 1656..1550 445 94.4 Minus
3L 28110227 3L 23820240..23820448 1771..1579 440 81.8 Minus
2R 25286936 2R 4339359..4339478 2011..2131 390 90.1 Plus
U 3151297 U 2331658..2331768 2188..2078 390 90.1 Minus
X 23542271 X 21623989..21624103 1908..1793 380 90.5 Minus
3L 28110227 3L 27113838..27113943 2033..2135 375 92.5 Plus
3L 28110227 3L 24266650..24266759 2189..2073 370 89.7 Minus
2R 25286936 2R 4339227..4339355 1793..1922 345 86.2 Plus
2R 25286936 2R 2780521..2780703 1793..1990 335 80.3 Plus
U 3151297 U 174139..174231 2173..2081 330 90.3 Minus
U 3151297 U 789560..789652 2081..2173 330 90.3 Plus
3L 28110227 3L 25877207..25877292 1771..1686 325 91.9 Minus
Y 3667352 Y 2481750..2481820 1686..1616 325 97.2 Minus
3L 28110227 3L 23610443..23610521 1692..1770 320 93.7 Plus
3R 32079331 3R 4201024..4201099 1771..1696 305 93.4 Minus
Y 3667352 Y 1654091..1654208 1975..1857 305 85.7 Minus
Ymm 880023 Ymm 43441..43558 1857..1975 305 85.7 Plus
3L 28110227 3L 23819870..23819984 2151..2040 300 86.1 Minus
3R 32079331 3R 2846183..2846252 1545..1614 290 94.3 Plus
Y 3667352 Y 2481488..2481604 1804..1921 285 84.7 Plus
3R 32079331 3R 868399..868451 1545..1597 265 100 Plus
2R 25286936 2R 2782741..2782842 1988..2095 265 85.2 Plus
3L 28110227 3L 24196020..24196104 1841..1925 260 87.1 Plus
2R 25286936 2R 3921772..3921828 2132..2188 255 96.5 Plus
3R 32079331 3R 7060660..7060726 2165..2099 245 91 Minus
2L 23513712 2L 21825306..21825363 2189..2132 245 94.8 Minus
X 23542271 X 22724520..22724656 2012..2151 240 81.1 Plus
2L 23513712 2L 15204076..15204141 2163..2098 240 90.9 Minus
3L 28110227 3L 27113754..27113836 1917..1999 235 85.5 Plus
3R 32079331 3R 868517..868607 1686..1771 210 84.6 Plus
3L 28110227 3L 24195851..24195935 1690..1771 210 85.9 Plus
3R 32079331 3R 4230753..4230802 2206..2157 205 94 Minus
2R 25286936 2R 31427..31505 1692..1770 200 83.5 Plus
X 23542271 X 23105083..23105145 2089..2151 195 87.3 Plus
3R 32079331 3R 1429289..1429367 1770..1692 185 82.3 Minus
3L 28110227 3L 25877308..25877350 1686..1644 185 95.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19673349..19674973 565..2189 8110 99.9 Plus
X 23527363 X 19672665..19672970 1..306 1530 100 Plus
3R 31820162 3R 390849..391245 2190..1793 1455 91.4 Minus
3R 31820162 3R 3941394..3941788 2188..1793 1430 91.1 Minus
3L 28103327 3L 27702450..27702827 2171..1793 1345 90.7 Minus
3L 28103327 3L 27677143..27677520 2171..1793 1345 90.7 Minus
3L 28103327 3L 27685111..27685488 2171..1793 1330 90.5 Minus
3L 28103327 3L 27694484..27694861 2171..1793 1330 90.5 Minus
3L 28103327 3L 24982744..24983122 1793..2172 1320 90.2 Plus
3L 28103327 3L 25269447..25269825 2172..1793 1320 90.2 Minus
3R 31820162 3R 666252..666647 1793..2187 1305 89.4 Plus
X 23527363 X 19673033..19673291 307..565 1295 100 Plus
3R 31820162 3R 2232524..2232873 2145..1795 1295 91.7 Minus
3R 31820162 3R 2238163..2238512 2145..1795 1280 91.4 Minus
3R 31820162 3R 2245978..2246327 2145..1795 1250 90.8 Minus
Y 3410481 Y 1071852..1072143 1903..2194 1145 92.8 Plus
X 23527363 X 2434169..2434526 1793..2153 1115 88.6 Plus
3L 28103327 3L 26121349..26121683 2119..1789 1060 88.6 Minus
2L 23513712 2L 22089931..22090207 2187..1915 930 90.2 Minus
3L 28103327 3L 27152784..27153012 1959..2187 920 93.4 Plus
2R 25260384 2R 2949521..2949773 2046..1793 855 89.7 Minus
2R 25260384 2R 3176838..3177066 2186..1954 815 91.4 Minus
Unimproved_211000022279887_1314_3476 2162 Unimproved_211000022279887_1314_3476 860..1106 2040..1793 810 89.1 Minus
X 23527363 X 5881727..5881932 2192..1987 805 92.7 Minus
3R 31820162 3R 1670787..1671022 2040..1803 780 89.9 Minus
3R 31820162 3R 5736445..5736620 2186..2011 685 92.6 Minus
2R 25260384 2R 2949941..2950082 1686..1545 680 98.5 Minus
3L 28103327 3L 24225569..24225787 1816..2035 670 87.7 Plus
3L 28103327 3L 25870000..25870240 2035..1793 670 86.4 Minus
3L 28103327 3L 24225263..24225404 1545..1686 650 97.1 Plus
3R 31820162 3R 1670650..1670788 2191..2053 635 97.1 Minus
X 23527363 X 21609353..21609494 1686..1545 620 95.7 Minus
3R 31820162 3R 391413..391554 1686..1545 620 95.7 Minus
3L 28103327 3L 24400700..24400873 2015..2188 615 90.2 Plus
3L 28103327 3L 24388231..24388404 2188..2015 615 90.2 Minus
3L 28103327 3L 23032618..23032785 1990..2154 605 91.6 Plus
2L 23513712 2L 23074775..23074906 1545..1676 585 96.2 Plus
2R 25260384 2R 5481954..5482093 1686..1547 580 94.2 Minus
X 23527363 X 6960227..6960371 2117..1973 575 93.1 Minus
3R 31820162 3R 1671175..1671316 1686..1545 575 93.6 Minus
3L 28103327 3L 23813083..23813255 2017..1845 565 88.4 Minus
3L 28103327 3L 23032419..23032605 1793..1982 555 87.8 Plus
2R 25260384 2R 25052865..25052988 2173..2050 545 95.9 Minus
3L 28103327 3L 24982438..24982577 1545..1686 540 94.3 Plus
3L 28103327 3L 25269996..25270132 1683..1545 540 94.9 Minus
3L 28103327 3L 24188790..24188930 1545..1686 535 92.9 Plus
3R 31820162 3R 626476..626702 1805..2037 525 84.5 Plus
3L 28103327 3L 24225789..24225910 2052..2173 520 95 Plus
3L 28103327 3L 11830907..11831057 2019..1869 515 89.4 Minus
3R 31820162 3R 5295454..5295599 2190..2038 515 90.1 Minus
2R 25260384 2R 2780226..2780354 1558..1686 510 93 Plus
3L 28103327 3L 27152627..27152776 1795..1945 505 90 Plus
Y 3410481 Y 304209..304345 1545..1681 505 91.2 Plus
2L 23513712 2L 22567143..22567279 2204..2061 500 90.9 Minus
Y 3410481 Y 3392748..3392868 2065..2185 500 94.2 Plus
3L 28103327 3L 23603668..23603840 1971..2143 485 86.9 Plus
X 23527363 X 21608958..21609087 2076..1947 485 91.5 Minus
X 23527363 X 22709197..22709313 1557..1673 480 94 Plus
2R 25260384 2R 3922859..3922972 1992..2105 480 94.7 Plus
3R 31820162 3R 5295600..5295721 2007..1886 475 92.6 Minus
2R 25260384 2R 2949384..2949521 2197..2053 475 89.6 Minus
3L 28103327 3L 23330129..23330275 2042..2193 470 89.4 Plus
3L 28103327 3L 23894525..23894663 1550..1684 460 89.9 Plus
3L 28103327 3L 23802583..23802721 1550..1684 460 89.9 Plus
3L 28103327 3L 26121833..26121970 1683..1545 460 89.9 Minus
2R 25260384 2R 4340151..4340258 1579..1686 450 94.4 Plus
Y 3410481 Y 304565..304702 1846..1983 450 88.4 Plus
3L 28103327 3L 23783160..23783266 1656..1550 445 94.3 Minus
2L 23513712 2L 21650785..21650896 1889..2000 425 91.9 Plus
3L 28103327 3L 25269892..25269977 1771..1686 400 97.6 Minus
3R 31820162 3R 2246396..2246481 1771..1686 400 97.6 Minus
2R 25260384 2R 4340558..4340677 2011..2131 400 90 Plus
X 23527363 X 21609081..21609195 1908..1793 390 90.5 Minus
Unimproved_211000022279887_1314_3476 2162 Unimproved_211000022279887_1314_3476 749..859 2188..2078 390 90 Minus
3L 28103327 3L 27106938..27107043 2033..2135 385 92.4 Plus
2R 25260384 2R 5481853..5481938 1771..1686 385 96.5 Minus
3L 28103327 3L 24259750..24259859 2189..2073 380 89.7 Minus
2R 25260384 2R 4340273..4340359 1685..1771 375 95.4 Plus
Y 3410481 Y 304370..304451 1690..1771 365 96.3 Plus
Y 3410481 Y 304703..304789 1993..2079 360 94.2 Plus
3R 31820162 3R 391312..391397 1771..1686 355 94.1 Minus
2R 25260384 2R 4340426..4340554 1793..1922 355 86.1 Plus
2L 23513712 2L 22567283..22567382 2048..1949 350 90 Minus
2L 23513712 2L 23074920..23075004 1686..1771 345 95.3 Plus
X 23527363 X 21609252..21609337 1771..1686 340 93 Minus
2L 23513712 2L 21337241..21337326 1686..1771 340 93 Plus
3L 28103327 3L 23813443..23813548 1684..1579 335 87.7 Minus
3L 28103327 3L 24400598..24400702 1899..2003 330 87.6 Plus
3L 28103327 3L 24388402..24388506 2003..1899 330 87.6 Minus
3L 28103327 3L 24982600..24982677 1694..1771 330 94.8 Plus
3R 31820162 3R 1671074..1671154 1771..1691 330 93.8 Minus
2R 25260384 2R 2780587..2780703 1874..1990 330 85.4 Plus
Unmapped_scaffold_08 88768 Unmapped_scaffold_08 87772..87864 2173..2081 330 90.3 Minus
3L 28103327 3L 25870307..25870392 1771..1686 325 91.8 Minus
2L 23513712 2L 21337151..21337224 1612..1685 325 95.9 Plus
Y 3410481 Y 2580859..2580929 1686..1616 325 97.1 Minus
3L 28103327 3L 23603543..23603621 1692..1770 320 93.6 Plus
3R 31820162 3R 2246500..2246580 1683..1603 315 92.5 Minus
Y 3410481 Y 1753200..1753317 1975..1857 315 85.7 Minus
Unmapped_scaffold_05 73091 Unmapped_scaffold_05 43441..43558 1857..1975 315 85.7 Plus
3L 28103327 3L 23813340..23813425 1771..1686 310 90.6 Minus
3L 28103327 3L 23812970..23813084 2151..2040 310 86 Minus
3R 31820162 3R 3941855..3941930 1771..1696 305 93.4 Minus
X 23527363 X 22709348..22709427 1692..1771 295 91.2 Plus
Y 3410481 Y 2580597..2580713 1804..1921 295 84.7 Plus
3R 31820162 3R 2643761..2643830 1545..1614 290 94.2 Plus
2R 25260384 2R 2949840..2949921 1771..1690 275 89 Minus
3R 31820162 3R 665977..666029 1545..1597 265 100 Plus
3L 28103327 3L 24189120..24189204 1841..1925 260 87 Plus
2R 25260384 2R 3922971..3923027 2132..2188 255 96.4 Plus
2R 25260384 2R 25052991..25053053 2036..1974 255 93.6 Minus
3R 31820162 3R 626713..626803 2064..2151 250 86.8 Plus
2L 23513712 2L 21650694..21650777 1793..1877 250 88.2 Plus
3R 31820162 3R 6801491..6801557 2165..2099 245 91 Minus
2R 25260384 2R 2782741..2782801 1988..2048 245 93.4 Plus
2L 23513712 2L 21825306..21825363 2189..2132 245 94.8 Minus
2L 23513712 2L 15204076..15204156 2163..2080 245 88 Minus
3L 28103327 3L 27106854..27106936 1917..1999 235 85.5 Plus
2R 25260384 2R 2780377..2780454 1693..1771 235 88.6 Plus
3L 28103327 3L 24188951..24189035 1690..1771 220 85.8 Plus
3R 31820162 3R 3971584..3971633 2206..2157 205 94 Minus
2R 25260384 2R 2780521..2780589 1793..1862 205 88.5 Plus
2R 25260384 2R 31427..31505 1692..1770 200 83.5 Plus
X 23527363 X 22709686..22709748 2089..2151 195 87.3 Plus
X 23527363 X 23090175..23090237 2089..2151 195 87.3 Plus
3R 31820162 3R 666095..666139 1686..1730 195 95.5 Plus
3L 28103327 3L 25870408..25870450 1686..1644 185 95.3 Minus
X 23527363 X 22709568..22709609 1949..1990 180 95.2 Plus
X 23527363 X 22709488..22709562 1835..1909 180 82.6 Plus
3R 31820162 3R 666029..666079 1636..1686 180 90.1 Plus
2R 25260384 2R 4340675..4340710 2155..2190 180 100 Plus
3L 28103327 3L 23783049..23783098 1751..1702 175 90 Minus
3L 28103327 3L 23781167..23781225 2151..2093 175 86.4 Minus
3L 28103327 3L 24225449..24225483 1735..1769 175 100 Plus
3L 28103327 3L 23894694..23894743 1702..1751 175 90 Plus
3L 28103327 3L 23802752..23802801 1702..1751 175 90 Plus
2R 25260384 2R 31266..31377 1547..1658 170 76.7 Plus
3L 28103327 3L 26121764..26121808 1736..1692 165 91.1 Minus
X 23527363 X 2434516..2434553 2150..2187 160 94.7 Plus
X 23527363 X 5881928..5881962 1930..1896 160 97.1 Minus
X 23527363 X 22709612..22709666 2012..2066 155 85.4 Plus
Y 3410481 Y 2580802..2580843 1727..1686 150 90.4 Minus
3L 28103327 3L 25869928..25869974 2135..2089 145 87.2 Minus
3R 31820162 3R 626331..626365 1699..1733 145 94.2 Plus
3R 31820162 3R 2238132..2238163 2187..2156 145 96.8 Minus
3R 31820162 3R 2232493..2232524 2187..2156 145 96.8 Minus
3R 31820162 3R 2245947..2245978 2187..2156 145 96.8 Minus
Blast to na_te.dros performed 2019-03-16 05:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
G5A 2841 G5A G5A 2841bp 2172..2841 1543..2160 2313 85.6 Plus
G5 4856 G5 G5_DM 4856bp 4120..4853 1535..2176 839 61.6 Plus

LD40846.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:46:14 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19553362..19553667 1..306 100 -> Plus
chrX 19553730..19553988 307..565 100 -> Plus
chrX 19554047..19555025 566..1544 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:16 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..588 80..667 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:44 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..588 80..667 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:12:26 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 1..588 80..667 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:08 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..588 80..667 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:09:35 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 1..588 80..667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:56 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..2180 1..2180 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:44 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..2180 1..2180 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:26 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 7..2186 1..2180 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:08 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..2180 1..2180 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:09:35 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 7..2186 1..2180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:14 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
X 19664567..19664872 1..306 100 -> Plus
X 19664935..19665193 307..565 100 -> Plus
X 19665252..19666866 566..2180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:14 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
X 19664567..19664872 1..306 100 -> Plus
X 19664935..19665193 307..565 100 -> Plus
X 19665252..19666866 566..2180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:14 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
X 19664567..19664872 1..306 100 -> Plus
X 19664935..19665193 307..565 100 -> Plus
X 19665252..19666866 566..2180 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:26 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558600..19558905 1..306 100 -> Plus
arm_X 19558968..19559226 307..565 100 -> Plus
arm_X 19559285..19560899 566..2180 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:30 Download gff for LD40846.complete
Subject Subject Range Query Range Percent Splice Strand
X 19672665..19672970 1..306 100 -> Plus
X 19673033..19673291 307..565 100 -> Plus
X 19673350..19674964 566..2180 100   Plus

LD40846.pep Sequence

Translation from 79 to 666

> LD40846.pep
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY*

LD40846.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20420-PA 195 GF20420-PA 1..195 1..195 995 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19244-PA 195 GG19244-PA 1..195 1..195 1004 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12100-PA 195 GH12100-PA 1..195 1..195 971 90.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-PC 195 CG14216-PC 1..195 1..195 1007 100 Plus
Ssu72-PA 195 CG14216-PA 1..195 1..195 1007 100 Plus
Ssu72-PB 194 CG14216-PB 1..194 1..195 986 99 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11105-PA 195 GI11105-PA 1..195 1..195 973 91.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18262-PA 221 GL18262-PA 24..221 1..195 851 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22980-PA 195 GM22980-PA 1..195 1..195 1022 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17455-PA 195 GD17455-PA 1..195 1..195 1008 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15959-PA 195 GJ15959-PA 1..195 1..195 986 92.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20018-PA 195 GK20018-PA 1..195 1..195 962 90.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15863-PA 195 GE15863-PA 1..195 1..195 1006 95.9 Plus

LD40846.hyp Sequence

Translation from 79 to 666

> LD40846.hyp
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY*

LD40846.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-PC 195 CG14216-PC 1..195 1..195 1007 100 Plus
Ssu72-PA 195 CG14216-PA 1..195 1..195 1007 100 Plus
Ssu72-PB 194 CG14216-PB 1..194 1..195 986 99 Plus