Clone LD40851 Report

Search the DGRC for LD40851

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:408
Well:51
Vector:pOT2
Associated Gene/TranscriptAtf-2-RA
Protein status:LD40851.pep: validated full length
Preliminary Size:2676
Sequenced Size:2472

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32331 2001-07-04 Blastp of sequenced clone
CG32331 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

LD40851.complete Sequence

2472 bp (2472 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060427

> LD40851.complete
CCAGCTGATCGATCATCGAATCTAGAGCGCTAAGATCAAAAATAAACAGA
AATCAGATTTTACTTCCGAGTTTCCGATTTGGGCCAATTTCTGGGTATTA
AATTGTTTCGATTCGCAGACAAAGGGCGCAGAGAATCTGTGTTGTCAACA
ATGGGAACACCCACACGCATTGTGGCCGTGTGACAAGTCGCATTTTCGGC
AAGATCAAGCGATCACAACAAAGTGCCAACAGGGCCAATAGGGCGAAATT
GTATTCCCAACAAATGATTGCTTATCGTTTGTTTGGCGGACGCTGGCTGC
TGCGGCTGATAATGTCATTATCCTGGGCGCAGAGCAGCGCAAGGAGTCCG
AGTCCTGCACGCCGCATGACGTCACCAGGACAAGCCGACAAATTGACGCA
AAACATTTAACGCTGGAAATTGGGATTGGGATTGGGATCGGGTCGGCAGA
CATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTGAGGGGATCGAAAGGC
GAAGGACCACAGGACGACGTGGCCGGCTCGGCTCTCTCGCTCGCTCGCTC
TGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCGTTGCAGCAGGAGCAC
ACAAACACGGCGACATGTATTTTCCGCATTTTTTGTTGCCTTCTGCCTGT
GGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGTGGCAGGATGACGGTG
GTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTATTGTGTGTCCTCTAT
TATGCATTGCGTACGGCCTCGCCCGGCGTGTTGACATTTTTATTCCAAAC
AGTTGAGCAATATTTATAAACTGGCCGAAAAAAAAGGAGCGGGAGGTGCT
GGAGAGGAGCAGGAGAGGAGCAGGAGGAGGATGATGCGGGGGTCATGGTG
CATGATGCATGCCCAATGGCTTTATTTCCGGGTGACCGTGTAAAACGTGC
TCGTGGTTTGCAGCCTATTAAATGAGCTATTTGATTAACATTGTTCGTTG
TTACGCTAATGAAAGGACAAAAGCGAATATTTGGACTACGAGGCACAAAG
GACACAGGCCCGAAGCCATTTTACAGGACAATTCATAAAAACATTTATAA
TGCAGAGCATGATATTTATATTCCATGCATGCAAGGAAGCTATGCATATT
TATATTTGTAAAACGTTTTTTAAAAGCAAGGCAAAGTCAAGACTGAGTAT
TGATTTGAATATTATTTTAATCTAATTAAAAAGATTACTCAACTTATATA
AGAATAATCTAATCCTCGAGATTGACCCTAGCCTTTTGCAATAAGCACTT
AACTTTCCACAAACAACAATGTTCATAAACATCAGGCAATTCAAATATTT
CTACATTAATCGAAATTGTACAATTTACTCTGCCACTCAATTACTTTGTT
TTTCTTTGGCAGCTTATTAAATGCCACATTCTACATGCCCAGGAGCGAGG
ACCCAGCATCTGTTGATGTTTGCACGGGCGAAACACCTTGGAGTCCGGGG
TAAAACCGCACGAGCCCAACCAGATGATGATCTAATTGAATGACAATATT
ATGCCAGGCCTAATTCAATTTGCATTCCTTGGGAAGAGGTGCAGATGGAG
GAGCGAAGGATATGGGGCTGAATCTTAAACAAACACGACAATTACTGCCG
ACGGATGCACTTGTCCGGCCAAATGACTTGGTCCCGTAATTAGCCCGGGG
ATGAAAGGATGCGGGATGGCTTCCCGTTTTTCGGTCCTTGGTCCTTTGTC
GGCCTCCTCGGGGGTCCTGCGCGGATCCTGCTGTCTAATTACAGGGTAAT
CAGGCTTTCAGCCGCCCAGACCAGCGAATGATGATTGATTGAGGGTGACA
TCTGCCCAAGCGCGTGCCATGCCAAGGTGCTTCGAGGAAAGTGCAAACAG
CAGATGTAATGGATATGGAAAGGCAAATCGAAAACTGATTTGGAGCGGAA
CTACAGCCACTTCCATTCCATACCCACAATCGCAATCAGAATCGCCGAGT
GTTCCATATAGTGCCACGACTTGTCTTGGCCTTTGACGCCGTCTTTTGTA
CTTAGTTGAGTTGAGTTCAGAAGGCATGGTGATGCAGATGGAGCTGGAGG
TGAAGTCACCGCCCGCTGGCTTTTCAATGAGCTGAAAATCAAAAGCTATA
CGCGATTTCACACACAGTACGACGGATTAAGGATATGCGTGTGCACGCAG
AAAAATATTGGATGAAAGTTTCAGTTTCGATGGGTTATAAGTTTAAATAC
GAAATATAACTGGCTGGATTGATATATGACCATATTGATATATTACCCAT
GCTAACTCCAAGGACCAAGGATCCCTGGAGCAGCTGCTCCTTCGGAACGC
TGTATTTGATTTGCGATTCGAGGCTGGCGGAAATGGAATGACACGCGAGG
CACTCGTACTTTGTTTGACGATTGGCAAAAATGCTGCCTCCATTGCCCGA
CAAAAAAAAAAAAAAAAAAAAA

LD40851.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
nc_9873.a 2451 nc_9873.a 1..2451 1..2451 12255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1479138..1480528 376..1767 6745 99.3 Plus
chr3L 24539361 chr3L 1478522..1478900 1..379 1895 100 Plus
chr3L 24539361 chr3L 1480925..1481281 1951..2307 1785 100 Plus
chr3L 24539361 chr3L 1481345..1481488 2308..2451 720 100 Plus
chr3L 24539361 chr3L 1480758..1480864 1844..1950 520 99.1 Plus
chr3L 24539361 chr3L 1480610..1480694 1763..1847 425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479608..1480999 376..1767 6960 100 Plus
3L 28110227 3L 1478992..1479370 1..379 1895 100 Plus
3L 28110227 3L 1481396..1481752 1951..2307 1785 100 Plus
3L 28110227 3L 1481816..1481980 2308..2472 825 100 Plus
3L 28110227 3L 1481229..1481335 1844..1950 535 100 Plus
3L 28110227 3L 1481081..1481165 1763..1847 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1479608..1480999 376..1767 6960 100 Plus
3L 28103327 3L 1478992..1479370 1..379 1895 100 Plus
3L 28103327 3L 1481396..1481752 1951..2307 1785 100 Plus
3L 28103327 3L 1481816..1481980 2308..2472 825 100 Plus
3L 28103327 3L 1481229..1481335 1844..1950 535 100 Plus
3L 28103327 3L 1481081..1481165 1763..1847 425 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:42:00 has no hits.

LD40851.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:18 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1478522..1478899 1..378 100 -> Plus
chr3L 1479141..1480524 379..1763 97 -> Plus
chr3L 1480611..1480691 1764..1844 100 -> Plus
chr3L 1480759..1480864 1845..1950 99 -> Plus
chr3L 1480925..1481281 1951..2307 100 -> Plus
chr3L 1481345..1481488 2308..2451 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:48:19 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:20 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 2993..3020 416..443 92   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1478992..1479369 1..378 100 -> Plus
3L 1479611..1480995 379..1763 100 -> Plus
3L 1481082..1481162 1764..1844 100 -> Plus
3L 1481230..1481335 1845..1950 100 -> Plus
3L 1481396..1481752 1951..2307 100 -> Plus
3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1478992..1479369 1..378 100 -> Plus
3L 1479611..1480995 379..1763 100 -> Plus
3L 1481082..1481162 1764..1844 100 -> Plus
3L 1481230..1481335 1845..1950 100 -> Plus
3L 1481396..1481752 1951..2307 100 -> Plus
3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1478992..1479369 1..378 100 -> Plus
3L 1479611..1480995 379..1763 100 -> Plus
3L 1481082..1481162 1764..1844 100 -> Plus
3L 1481230..1481335 1845..1950 100 -> Plus
3L 1481396..1481752 1951..2307 100 -> Plus
3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1478992..1479369 1..378 100 -> Plus
arm_3L 1479611..1480995 379..1763 100 -> Plus
arm_3L 1481082..1481162 1764..1844 100 -> Plus
arm_3L 1481230..1481335 1845..1950 100 -> Plus
arm_3L 1481396..1481752 1951..2307 100 -> Plus
arm_3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1478992..1479369 1..378 100 -> Plus
arm_3L 1479611..1480995 379..1763 100 -> Plus
arm_3L 1481082..1481162 1764..1844 100 -> Plus
arm_3L 1481230..1481335 1845..1950 100 -> Plus
arm_3L 1481396..1481752 1951..2307 100 -> Plus
arm_3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1478992..1479369 1..378 100 -> Plus
arm_3L 1479611..1480995 379..1763 100 -> Plus
arm_3L 1481082..1481162 1764..1844 100 -> Plus
arm_3L 1481230..1481335 1845..1950 100 -> Plus
arm_3L 1481396..1481752 1951..2307 100 -> Plus
arm_3L 1481816..1481959 2308..2451 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:25 Download gff for LD40851.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1478992..1479369 1..378 100 -> Plus
3L 1479611..1480995 379..1763 100 -> Plus
3L 1481082..1481162 1764..1844 100 -> Plus
3L 1481230..1481335 1845..1950 100 -> Plus
3L 1481396..1481752 1951..2307 100 -> Plus
3L 1481816..1481959 2308..2451 100   Plus

LD40851.pep Sequence

Translation from 451 to 783

> LD40851.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*

LD40851.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14416-PA 92 GM14416-PA 14..92 32..110 403 97.5 Plus

LD40851.hyp Sequence

Translation from 451 to 783

> LD40851.hyp
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*
Sequence LD40851.hyp has no blast hits.