LD40851.complete Sequence
2472 bp (2472 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060427
> LD40851.complete
CCAGCTGATCGATCATCGAATCTAGAGCGCTAAGATCAAAAATAAACAGA
AATCAGATTTTACTTCCGAGTTTCCGATTTGGGCCAATTTCTGGGTATTA
AATTGTTTCGATTCGCAGACAAAGGGCGCAGAGAATCTGTGTTGTCAACA
ATGGGAACACCCACACGCATTGTGGCCGTGTGACAAGTCGCATTTTCGGC
AAGATCAAGCGATCACAACAAAGTGCCAACAGGGCCAATAGGGCGAAATT
GTATTCCCAACAAATGATTGCTTATCGTTTGTTTGGCGGACGCTGGCTGC
TGCGGCTGATAATGTCATTATCCTGGGCGCAGAGCAGCGCAAGGAGTCCG
AGTCCTGCACGCCGCATGACGTCACCAGGACAAGCCGACAAATTGACGCA
AAACATTTAACGCTGGAAATTGGGATTGGGATTGGGATCGGGTCGGCAGA
CATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTGAGGGGATCGAAAGGC
GAAGGACCACAGGACGACGTGGCCGGCTCGGCTCTCTCGCTCGCTCGCTC
TGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCGTTGCAGCAGGAGCAC
ACAAACACGGCGACATGTATTTTCCGCATTTTTTGTTGCCTTCTGCCTGT
GGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGTGGCAGGATGACGGTG
GTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTATTGTGTGTCCTCTAT
TATGCATTGCGTACGGCCTCGCCCGGCGTGTTGACATTTTTATTCCAAAC
AGTTGAGCAATATTTATAAACTGGCCGAAAAAAAAGGAGCGGGAGGTGCT
GGAGAGGAGCAGGAGAGGAGCAGGAGGAGGATGATGCGGGGGTCATGGTG
CATGATGCATGCCCAATGGCTTTATTTCCGGGTGACCGTGTAAAACGTGC
TCGTGGTTTGCAGCCTATTAAATGAGCTATTTGATTAACATTGTTCGTTG
TTACGCTAATGAAAGGACAAAAGCGAATATTTGGACTACGAGGCACAAAG
GACACAGGCCCGAAGCCATTTTACAGGACAATTCATAAAAACATTTATAA
TGCAGAGCATGATATTTATATTCCATGCATGCAAGGAAGCTATGCATATT
TATATTTGTAAAACGTTTTTTAAAAGCAAGGCAAAGTCAAGACTGAGTAT
TGATTTGAATATTATTTTAATCTAATTAAAAAGATTACTCAACTTATATA
AGAATAATCTAATCCTCGAGATTGACCCTAGCCTTTTGCAATAAGCACTT
AACTTTCCACAAACAACAATGTTCATAAACATCAGGCAATTCAAATATTT
CTACATTAATCGAAATTGTACAATTTACTCTGCCACTCAATTACTTTGTT
TTTCTTTGGCAGCTTATTAAATGCCACATTCTACATGCCCAGGAGCGAGG
ACCCAGCATCTGTTGATGTTTGCACGGGCGAAACACCTTGGAGTCCGGGG
TAAAACCGCACGAGCCCAACCAGATGATGATCTAATTGAATGACAATATT
ATGCCAGGCCTAATTCAATTTGCATTCCTTGGGAAGAGGTGCAGATGGAG
GAGCGAAGGATATGGGGCTGAATCTTAAACAAACACGACAATTACTGCCG
ACGGATGCACTTGTCCGGCCAAATGACTTGGTCCCGTAATTAGCCCGGGG
ATGAAAGGATGCGGGATGGCTTCCCGTTTTTCGGTCCTTGGTCCTTTGTC
GGCCTCCTCGGGGGTCCTGCGCGGATCCTGCTGTCTAATTACAGGGTAAT
CAGGCTTTCAGCCGCCCAGACCAGCGAATGATGATTGATTGAGGGTGACA
TCTGCCCAAGCGCGTGCCATGCCAAGGTGCTTCGAGGAAAGTGCAAACAG
CAGATGTAATGGATATGGAAAGGCAAATCGAAAACTGATTTGGAGCGGAA
CTACAGCCACTTCCATTCCATACCCACAATCGCAATCAGAATCGCCGAGT
GTTCCATATAGTGCCACGACTTGTCTTGGCCTTTGACGCCGTCTTTTGTA
CTTAGTTGAGTTGAGTTCAGAAGGCATGGTGATGCAGATGGAGCTGGAGG
TGAAGTCACCGCCCGCTGGCTTTTCAATGAGCTGAAAATCAAAAGCTATA
CGCGATTTCACACACAGTACGACGGATTAAGGATATGCGTGTGCACGCAG
AAAAATATTGGATGAAAGTTTCAGTTTCGATGGGTTATAAGTTTAAATAC
GAAATATAACTGGCTGGATTGATATATGACCATATTGATATATTACCCAT
GCTAACTCCAAGGACCAAGGATCCCTGGAGCAGCTGCTCCTTCGGAACGC
TGTATTTGATTTGCGATTCGAGGCTGGCGGAAATGGAATGACACGCGAGG
CACTCGTACTTTGTTTGACGATTGGCAAAAATGCTGCCTCCATTGCCCGA
CAAAAAAAAAAAAAAAAAAAAA
LD40851.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nc_9873.a | 2451 | nc_9873.a | 1..2451 | 1..2451 | 12255 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 1479138..1480528 | 376..1767 | 6745 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 1478522..1478900 | 1..379 | 1895 | 100 | Plus |
chr3L | 24539361 | chr3L | 1480925..1481281 | 1951..2307 | 1785 | 100 | Plus |
chr3L | 24539361 | chr3L | 1481345..1481488 | 2308..2451 | 720 | 100 | Plus |
chr3L | 24539361 | chr3L | 1480758..1480864 | 1844..1950 | 520 | 99.1 | Plus |
chr3L | 24539361 | chr3L | 1480610..1480694 | 1763..1847 | 425 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479608..1480999 | 376..1767 | 6960 | 100 | Plus |
3L | 28110227 | 3L | 1478992..1479370 | 1..379 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 1481396..1481752 | 1951..2307 | 1785 | 100 | Plus |
3L | 28110227 | 3L | 1481816..1481980 | 2308..2472 | 825 | 100 | Plus |
3L | 28110227 | 3L | 1481229..1481335 | 1844..1950 | 535 | 100 | Plus |
3L | 28110227 | 3L | 1481081..1481165 | 1763..1847 | 425 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 1479608..1480999 | 376..1767 | 6960 | 100 | Plus |
3L | 28103327 | 3L | 1478992..1479370 | 1..379 | 1895 | 100 | Plus |
3L | 28103327 | 3L | 1481396..1481752 | 1951..2307 | 1785 | 100 | Plus |
3L | 28103327 | 3L | 1481816..1481980 | 2308..2472 | 825 | 100 | Plus |
3L | 28103327 | 3L | 1481229..1481335 | 1844..1950 | 535 | 100 | Plus |
3L | 28103327 | 3L | 1481081..1481165 | 1763..1847 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 16:42:00 has no hits.
LD40851.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:18 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 1478522..1478899 | 1..378 | 100 | -> | Plus |
chr3L | 1479141..1480524 | 379..1763 | 97 | -> | Plus |
chr3L | 1480611..1480691 | 1764..1844 | 100 | -> | Plus |
chr3L | 1480759..1480864 | 1845..1950 | 99 | -> | Plus |
chr3L | 1480925..1481281 | 1951..2307 | 100 | -> | Plus |
chr3L | 1481345..1481488 | 2308..2451 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:48:19 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:20 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atf-2-RA | 2993..3020 | 416..443 | 92 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:18 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
arm_3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
arm_3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
arm_3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
arm_3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
arm_3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
arm_3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
arm_3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
arm_3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
arm_3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
arm_3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
arm_3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
arm_3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
arm_3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
arm_3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
arm_3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:25 Download gff for
LD40851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1478992..1479369 | 1..378 | 100 | -> | Plus |
3L | 1479611..1480995 | 379..1763 | 100 | -> | Plus |
3L | 1481082..1481162 | 1764..1844 | 100 | -> | Plus |
3L | 1481230..1481335 | 1845..1950 | 100 | -> | Plus |
3L | 1481396..1481752 | 1951..2307 | 100 | -> | Plus |
3L | 1481816..1481959 | 2308..2451 | 100 | | Plus |
LD40851.pep Sequence
Translation from 451 to 783
> LD40851.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*
LD40851.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14416-PA | 92 | GM14416-PA | 14..92 | 32..110 | 403 | 97.5 | Plus |
LD40851.hyp Sequence
Translation from 451 to 783
> LD40851.hyp
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*
Sequence LD40851.hyp has no blast hits.