BDGP Sequence Production Resources |
Search the DGRC for LD40883
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 408 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | dan-RA |
Protein status: | LD40883.pep: gold |
Preliminary Size: | 3296 |
Sequenced Size: | 3260 |
Gene | Date | Evidence |
---|---|---|
CG11849 | 2001-01-01 | Release 2 assignment |
CG11849 | 2001-07-04 | Blastp of sequenced clone |
CG11849 | 2003-01-01 | Sim4 clustering to Release 3 |
dan | 2008-04-29 | Release 5.5 accounting |
dan | 2008-08-15 | Release 5.9 accounting |
dan | 2008-12-18 | 5.12 accounting |
3260 bp (3260 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051924
> LD40883.complete AGAGAGGTCGCACCGCACCGCACCGCATGTCCTGCCGCTAAAATTCGCAC GCCACAGCAGCGGTAAACATCACGCCGCATCGCGAGCACAGTGTTCGATT GTGATTGACCGAGTGATGTTATACTTTCAAATGAACAACAACATTAACTG AAAACAATAAATTCAAATCCATGTGAACTATAAGTAAAGTGATTTAAAAA CATCGCCGGTCGAGATAAGAATAATTTAACTGCTGCAAATAGTTGCGCTA TCACCGAATTTCTCCCGCCTTCGCTGGAAGAAGGCACCGATCCATTTTCG CCCCCGGAAGATAACTAAAAGACGCCAAGCTGTTCGACAACGGCCTAAAG TTGGATATTTCCAGCTACCCCCACATGAACATCCGCATGGGCACAAAGGG CAAGCGTCCCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCC AGAGGATCCACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGC GTGCCCGAGTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCG CTTCATGTCCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGG GCGATAAGATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGA GGTCTTCTGGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCC CCTGAACTTCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGAT CCCCTCTGAATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTT GGGTACAATGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAA GGCCAAAGTGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCC TAAATGCAATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACG GGCATATCACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAA CCTCAACTTGCTGGCCCAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTC TAAACAGTTTCCCAGCGGGCGCTGGTAACCTGAGGACCCCGAAGCCCAGT GGCCAAACGCCGCTGCAGGTGCAGAGCCCCAGGAGCGATAGTGGAGATCG ATCGGCGCAGGGATTGTCGGTAAAGAACTGGGCCAAACAGAAGCCGGGGG AGGGCCAGGGCAGCCTCAATCTGAGCATCAAGAACGAGGGCAAGGGAGGC GATATCAAGAGTCCCAGTCCTTCGATTGCTCCTTCGCAAATGGGCGGGCC CATGACGCTCTCCAATCTGGCCGAAGATCCCTTGCTCTACTGGCTCAAGT CGCAGCAGACCATGTTGGGTCTGAATCCCCTTTATCCGCCCACAATTCCC ATGGGCGTGACCAGTCCCCCTATCAGATCTTCCACGCCGCAGCACATGAG TCAGTTGGCACAGACTCCGCCGATACCCTCGGCTCCGCTAACACCCTCGT CCACACCGTCGGGCAGTCTGGACGAGAAGAACGCGGCGTGGTACAACTGG TGCAAGGCGTTCGGTGCCAGTCTGCATACCCTGAATCCCAATGCCGCCAC CTTGGCCGCCCTGCAAGCCAACCAACTGCAGCAGCAGGTGGCCACCACGG CCGCAGAGGGGGGATCCATGGGAGATCCCTCGAACATACTGTACTCCCAT CTCACGAAAGAGACTGAGACGCCGTCGGTGAGAAGTTTGTCCTCCAACGA ACAGAATCCCGAGGCTGACGAGGCCACCGAAACCGATCTCGATGGCGAAG TGGAGCCGGAGGCATCCGGGAAACCGGAGGATCTCTCAGCCGCCGGCAAA GTGATGACCCCTTCGCAAAGTCCCATTGCCCATTCATCAGGCAGCAGGAG TCCCGAACCAAAGGCGAAGACCAAAACCCCAGAGACCACGAATTCCACAA GCGAATGCAAGAAGATCCTAGACAATATGCTCTTCAAGATGGGCGGAATG GAGGCCACTGGTCCGTTGATGCCGGAACAGGGATCCTCCGAATCGGAGGG CAGCTTCCAGGACACCAGCAATCCGCATACGAACAACAACGATGTGAGCG CCAGCAATAACAATAACAATAATAACTCAAACAAAACGGACGAGGAGGAG AAGGCCAAGTATCTGGACTGCACGGCGGACGAGGATATCGAGGCCATCCG CCATGGCGAAAAGTTCCTGCAGTGGCTGGAGAATTGCAGCAATCCCCGCG TGACGGCCGTGCAGCTGATGCAACTTCGTTTCCTAATAGCCGCCATCAAG TCGGGCAACGAGACACCGATGATCGAGAAATCCGCTTTGCCGGAGGACAG CGAGGAGCACGCCGCGGAGGAGGAGGGCAGTGGGCGGGGCAAGAGTCGCC GTCGCAAATAGGAAAAGCCAAAGTTGGCGCCCACGGAGCCAGCCACGGAT ACAGAGATAGAGGATAGCCCAGACGGTGCTCTGCACGATGCAGAGCCAGG ACCCGGTGTCCTGGCTACAGATGCAAATGCAGATACCGCCGAGGGCTCGA CGAGGTGCCATGTCTATGCGCCGGCCGTCTACCGATCGTCGGCCACCCTA CTCAGCTCCCTGTTCTTCCCTCCCTACGAATTTGTACATTGTGACCTCGA CGATGACCCCGACGACTGCCAGATCACGGGCGAGTACCAGCAGTACGACG AACTGAGCTCCAGCAGTTAGACCACATGGTTCCACGCATCCGGAGGACTC CACTGAATTTATCTCCTAGCTGTGAAACCTATCGAGCATACTTTCAGTAT CTTTCAATTCAATTCGAATCCACTCCATTGCATTGCATTGCATTGTATTA ATTAATTAATCGTACGGTTAACGTGTATATATCGAGAAACTCTATTTGTA GCTATTATGCATTTCTTTTTGAACGGAAAGACAACCGACTCTGTTTTGTT AGTTTGTTTTTTCACCCAATGATGCATTCTAGAAAAATGTTATAGCCCTT AGTTTTTGTTACGAAAAAGAAAAAATACTTTTCGAACTGCAAGGTGTGTT GGCGCGAATGGCATGCATTTGATATCAAACGTTTTTAAATTTCGTATATT AATAACTATGGAAATGTGCTCAAAAGAATTTTCTTAATTCGGAATTAATG CGATATTTAAATAAAAACATTTACAAATTTAAATGTAATTTTAAATACAT GTTCAATAAAAAATAATTAGATAATTTTTATGAAACTCTTAGAAAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21012965..21015884 | 320..3242 | 14295 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 21008190..21008510 | 1..321 | 1590 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 20961373..20961587 | 352..566 | 475 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25189884..25192808 | 320..3244 | 14625 | 100 | Plus |
3R | 32079331 | 3R | 25185109..25185429 | 1..321 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 25138234..25138448 | 352..566 | 475 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24930715..24933639 | 320..3244 | 14625 | 100 | Plus |
3R | 31820162 | 3R | 24925940..24926260 | 1..321 | 1605 | 100 | Plus |
3R | 31820162 | 3R | 24879065..24879279 | 352..566 | 475 | 81.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21008190..21008510 | 1..321 | 99 | -> | Plus |
chr3R | 21012967..21015884 | 322..3242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 1..2037 | 375..2411 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 1..2037 | 375..2411 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RB | 1..2346 | 375..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 1..2037 | 375..2411 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RB | 1..2346 | 375..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 97..3338 | 1..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 97..3338 | 1..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 99..3340 | 1..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 97..3338 | 1..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dan-RA | 99..3340 | 1..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25189886..25192806 | 322..3242 | 100 | Plus | |
3R | 25185109..25185429 | 1..321 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25189886..25192806 | 322..3242 | 100 | Plus | |
3R | 25185109..25185429 | 1..321 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25189886..25192806 | 322..3242 | 100 | Plus | |
3R | 25185109..25185429 | 1..321 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21010831..21011151 | 1..321 | 100 | -> | Plus |
arm_3R | 21015608..21018528 | 322..3242 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24925940..24926260 | 1..321 | 100 | -> | Plus |
3R | 24930717..24933637 | 322..3242 | 100 | Plus |
Translation from 374 to 2410
> LD40883.hyp MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI EKSALPEDSEEHAAEEEGSGRGKSRRRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dan-PC | 678 | CG11849-PC | 1..678 | 1..678 | 3524 | 100 | Plus |
dan-PB | 781 | CG11849-PB | 1..678 | 1..678 | 3524 | 100 | Plus |
dan-PA | 678 | CG11849-PA | 1..678 | 1..678 | 3524 | 100 | Plus |
danr-PA | 419 | CG13651-PA | 9..408 | 1..500 | 406 | 31.1 | Plus |
Translation from 374 to 2410
> LD40883.pep MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI EKSALPEDSEEHAAEEEGSGRGKSRRRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17896-PA | 831 | GF17896-PA | 39..713 | 1..666 | 2467 | 78.2 | Plus |
Dana\GF17893-PA | 420 | GF17893-PA | 9..123 | 1..133 | 323 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11370-PA | 721 | GG11370-PA | 44..721 | 1..678 | 3413 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18053-PA | 687 | GH18053-PA | 1..687 | 1..678 | 1697 | 60.6 | Plus |
Dgri\GH18050-PA | 412 | GH18050-PA | 9..230 | 1..271 | 337 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dan-PC | 678 | CG11849-PC | 1..678 | 1..678 | 3524 | 100 | Plus |
dan-PB | 781 | CG11849-PB | 1..678 | 1..678 | 3524 | 100 | Plus |
dan-PA | 678 | CG11849-PA | 1..678 | 1..678 | 3524 | 100 | Plus |
danr-PA | 419 | CG13651-PA | 9..408 | 1..500 | 406 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23731-PA | 769 | GI23731-PA | 63..769 | 1..678 | 2020 | 61.4 | Plus |
Dmoj\GI23730-PA | 430 | GI23730-PA | 9..230 | 1..271 | 378 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21909-PA | 684 | GL21909-PA | 1..684 | 1..678 | 2317 | 70.1 | Plus |
Dper\GL21906-PA | 429 | GL21906-PA | 9..330 | 1..403 | 385 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11234-PA | 683 | GA11234-PA | 1..683 | 1..678 | 2331 | 71.2 | Plus |
Dpse\GA12437-PA | 432 | GA12437-PA | 9..333 | 1..403 | 379 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17814-PA | 762 | GM17814-PA | 43..687 | 1..668 | 2856 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21183-PA | 713 | GD21183-PA | 34..713 | 1..678 | 3496 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23602-PA | 696 | GJ23602-PA | 1..696 | 1..678 | 2009 | 63.1 | Plus |
Dvir\GJ23601-PA | 418 | GJ23601-PA | 9..144 | 1..156 | 363 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13892-PA | 810 | GK13892-PA | 34..697 | 1..646 | 2151 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23568-PA | 809 | GE23568-PA | 55..725 | 1..668 | 3014 | 93.2 | Plus |