Clone LD40883 Report

Search the DGRC for LD40883

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:408
Well:83
Vector:pOT2
Associated Gene/Transcriptdan-RA
Protein status:LD40883.pep: gold
Preliminary Size:3296
Sequenced Size:3260

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11849 2001-01-01 Release 2 assignment
CG11849 2001-07-04 Blastp of sequenced clone
CG11849 2003-01-01 Sim4 clustering to Release 3
dan 2008-04-29 Release 5.5 accounting
dan 2008-08-15 Release 5.9 accounting
dan 2008-12-18 5.12 accounting

Clone Sequence Records

LD40883.complete Sequence

3260 bp (3260 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051924

> LD40883.complete
AGAGAGGTCGCACCGCACCGCACCGCATGTCCTGCCGCTAAAATTCGCAC
GCCACAGCAGCGGTAAACATCACGCCGCATCGCGAGCACAGTGTTCGATT
GTGATTGACCGAGTGATGTTATACTTTCAAATGAACAACAACATTAACTG
AAAACAATAAATTCAAATCCATGTGAACTATAAGTAAAGTGATTTAAAAA
CATCGCCGGTCGAGATAAGAATAATTTAACTGCTGCAAATAGTTGCGCTA
TCACCGAATTTCTCCCGCCTTCGCTGGAAGAAGGCACCGATCCATTTTCG
CCCCCGGAAGATAACTAAAAGACGCCAAGCTGTTCGACAACGGCCTAAAG
TTGGATATTTCCAGCTACCCCCACATGAACATCCGCATGGGCACAAAGGG
CAAGCGTCCCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCC
AGAGGATCCACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGC
GTGCCCGAGTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCG
CTTCATGTCCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGG
GCGATAAGATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGA
GGTCTTCTGGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCC
CCTGAACTTCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGAT
CCCCTCTGAATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTT
GGGTACAATGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAA
GGCCAAAGTGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCC
TAAATGCAATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACG
GGCATATCACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAA
CCTCAACTTGCTGGCCCAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTC
TAAACAGTTTCCCAGCGGGCGCTGGTAACCTGAGGACCCCGAAGCCCAGT
GGCCAAACGCCGCTGCAGGTGCAGAGCCCCAGGAGCGATAGTGGAGATCG
ATCGGCGCAGGGATTGTCGGTAAAGAACTGGGCCAAACAGAAGCCGGGGG
AGGGCCAGGGCAGCCTCAATCTGAGCATCAAGAACGAGGGCAAGGGAGGC
GATATCAAGAGTCCCAGTCCTTCGATTGCTCCTTCGCAAATGGGCGGGCC
CATGACGCTCTCCAATCTGGCCGAAGATCCCTTGCTCTACTGGCTCAAGT
CGCAGCAGACCATGTTGGGTCTGAATCCCCTTTATCCGCCCACAATTCCC
ATGGGCGTGACCAGTCCCCCTATCAGATCTTCCACGCCGCAGCACATGAG
TCAGTTGGCACAGACTCCGCCGATACCCTCGGCTCCGCTAACACCCTCGT
CCACACCGTCGGGCAGTCTGGACGAGAAGAACGCGGCGTGGTACAACTGG
TGCAAGGCGTTCGGTGCCAGTCTGCATACCCTGAATCCCAATGCCGCCAC
CTTGGCCGCCCTGCAAGCCAACCAACTGCAGCAGCAGGTGGCCACCACGG
CCGCAGAGGGGGGATCCATGGGAGATCCCTCGAACATACTGTACTCCCAT
CTCACGAAAGAGACTGAGACGCCGTCGGTGAGAAGTTTGTCCTCCAACGA
ACAGAATCCCGAGGCTGACGAGGCCACCGAAACCGATCTCGATGGCGAAG
TGGAGCCGGAGGCATCCGGGAAACCGGAGGATCTCTCAGCCGCCGGCAAA
GTGATGACCCCTTCGCAAAGTCCCATTGCCCATTCATCAGGCAGCAGGAG
TCCCGAACCAAAGGCGAAGACCAAAACCCCAGAGACCACGAATTCCACAA
GCGAATGCAAGAAGATCCTAGACAATATGCTCTTCAAGATGGGCGGAATG
GAGGCCACTGGTCCGTTGATGCCGGAACAGGGATCCTCCGAATCGGAGGG
CAGCTTCCAGGACACCAGCAATCCGCATACGAACAACAACGATGTGAGCG
CCAGCAATAACAATAACAATAATAACTCAAACAAAACGGACGAGGAGGAG
AAGGCCAAGTATCTGGACTGCACGGCGGACGAGGATATCGAGGCCATCCG
CCATGGCGAAAAGTTCCTGCAGTGGCTGGAGAATTGCAGCAATCCCCGCG
TGACGGCCGTGCAGCTGATGCAACTTCGTTTCCTAATAGCCGCCATCAAG
TCGGGCAACGAGACACCGATGATCGAGAAATCCGCTTTGCCGGAGGACAG
CGAGGAGCACGCCGCGGAGGAGGAGGGCAGTGGGCGGGGCAAGAGTCGCC
GTCGCAAATAGGAAAAGCCAAAGTTGGCGCCCACGGAGCCAGCCACGGAT
ACAGAGATAGAGGATAGCCCAGACGGTGCTCTGCACGATGCAGAGCCAGG
ACCCGGTGTCCTGGCTACAGATGCAAATGCAGATACCGCCGAGGGCTCGA
CGAGGTGCCATGTCTATGCGCCGGCCGTCTACCGATCGTCGGCCACCCTA
CTCAGCTCCCTGTTCTTCCCTCCCTACGAATTTGTACATTGTGACCTCGA
CGATGACCCCGACGACTGCCAGATCACGGGCGAGTACCAGCAGTACGACG
AACTGAGCTCCAGCAGTTAGACCACATGGTTCCACGCATCCGGAGGACTC
CACTGAATTTATCTCCTAGCTGTGAAACCTATCGAGCATACTTTCAGTAT
CTTTCAATTCAATTCGAATCCACTCCATTGCATTGCATTGCATTGTATTA
ATTAATTAATCGTACGGTTAACGTGTATATATCGAGAAACTCTATTTGTA
GCTATTATGCATTTCTTTTTGAACGGAAAGACAACCGACTCTGTTTTGTT
AGTTTGTTTTTTCACCCAATGATGCATTCTAGAAAAATGTTATAGCCCTT
AGTTTTTGTTACGAAAAAGAAAAAATACTTTTCGAACTGCAAGGTGTGTT
GGCGCGAATGGCATGCATTTGATATCAAACGTTTTTAAATTTCGTATATT
AATAACTATGGAAATGTGCTCAAAAGAATTTTCTTAATTCGGAATTAATG
CGATATTTAAATAAAAACATTTACAAATTTAAATGTAATTTTAAATACAT
GTTCAATAAAAAATAATTAGATAATTTTTATGAAACTCTTAGAAAAAAAA
AAAAAAAAAA

LD40883.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
dan-RA 3703 dan-RA 426..3669 1..3244 16220 100 Plus
dan.c 3968 dan.c 727..3968 1..3242 16210 100 Plus
dan.b 3667 dan.b 426..3667 1..3242 16210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21012965..21015884 320..3242 14295 99.3 Plus
chr3R 27901430 chr3R 21008190..21008510 1..321 1590 99.7 Plus
chr3R 27901430 chr3R 20961373..20961587 352..566 475 81.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25189884..25192808 320..3244 14625 100 Plus
3R 32079331 3R 25185109..25185429 1..321 1605 100 Plus
3R 32079331 3R 25138234..25138448 352..566 475 81.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24930715..24933639 320..3244 14625 100 Plus
3R 31820162 3R 24925940..24926260 1..321 1605 100 Plus
3R 31820162 3R 24879065..24879279 352..566 475 81.3 Plus
Blast to na_te.dros performed 2019-03-16 22:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 2845..2927 2077..2158 143 67.1 Plus
Stalker 7256 Stalker STALKER 7256bp 2739..2821 2077..2158 143 67.1 Plus

LD40883.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:06 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21008190..21008510 1..321 99 -> Plus
chr3R 21012967..21015884 322..3242 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:21 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 1..2037 375..2411 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:53 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 1..2037 375..2411 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:36 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RB 1..2346 375..2720 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:21 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 1..2037 375..2411 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:07 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RB 1..2346 375..2720 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:20 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 97..3338 1..3242 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:53 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 97..3338 1..3242 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:36 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 99..3340 1..3242 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:21 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 97..3338 1..3242 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:07 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
dan-RA 99..3340 1..3242 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:06 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25189886..25192806 322..3242 100   Plus
3R 25185109..25185429 1..321 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:06 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25189886..25192806 322..3242 100   Plus
3R 25185109..25185429 1..321 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:06 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25189886..25192806 322..3242 100   Plus
3R 25185109..25185429 1..321 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:36 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21010831..21011151 1..321 100 -> Plus
arm_3R 21015608..21018528 322..3242 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:27 Download gff for LD40883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925940..24926260 1..321 100 -> Plus
3R 24930717..24933637 322..3242 100   Plus

LD40883.hyp Sequence

Translation from 374 to 2410

> LD40883.hyp
MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG
WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK
RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD
YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA
ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ
SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS
IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI
RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL
HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP
SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP
IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP
EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT
ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI
EKSALPEDSEEHAAEEEGSGRGKSRRRK*

LD40883.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
dan-PC 678 CG11849-PC 1..678 1..678 3524 100 Plus
dan-PB 781 CG11849-PB 1..678 1..678 3524 100 Plus
dan-PA 678 CG11849-PA 1..678 1..678 3524 100 Plus
danr-PA 419 CG13651-PA 9..408 1..500 406 31.1 Plus

LD40883.pep Sequence

Translation from 374 to 2410

> LD40883.pep
MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG
WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK
RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD
YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA
ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ
SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS
IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI
RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL
HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP
SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP
IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP
EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT
ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI
EKSALPEDSEEHAAEEEGSGRGKSRRRK*

LD40883.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17896-PA 831 GF17896-PA 39..713 1..666 2467 78.2 Plus
Dana\GF17893-PA 420 GF17893-PA 9..123 1..133 323 50.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11370-PA 721 GG11370-PA 44..721 1..678 3413 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18053-PA 687 GH18053-PA 1..687 1..678 1697 60.6 Plus
Dgri\GH18050-PA 412 GH18050-PA 9..230 1..271 337 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
dan-PC 678 CG11849-PC 1..678 1..678 3524 100 Plus
dan-PB 781 CG11849-PB 1..678 1..678 3524 100 Plus
dan-PA 678 CG11849-PA 1..678 1..678 3524 100 Plus
danr-PA 419 CG13651-PA 9..408 1..500 406 31.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23731-PA 769 GI23731-PA 63..769 1..678 2020 61.4 Plus
Dmoj\GI23730-PA 430 GI23730-PA 9..230 1..271 378 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21909-PA 684 GL21909-PA 1..684 1..678 2317 70.1 Plus
Dper\GL21906-PA 429 GL21906-PA 9..330 1..403 385 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11234-PA 683 GA11234-PA 1..683 1..678 2331 71.2 Plus
Dpse\GA12437-PA 432 GA12437-PA 9..333 1..403 379 31.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17814-PA 762 GM17814-PA 43..687 1..668 2856 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21183-PA 713 GD21183-PA 34..713 1..678 3496 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23602-PA 696 GJ23602-PA 1..696 1..678 2009 63.1 Plus
Dvir\GJ23601-PA 418 GJ23601-PA 9..144 1..156 363 50.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13892-PA 810 GK13892-PA 34..697 1..646 2151 70.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23568-PA 809 GE23568-PA 55..725 1..668 3014 93.2 Plus