Clone LD40940 Report

Search the DGRC for LD40940

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:409
Well:40
Vector:pOT2
Associated Gene/TranscriptCG3165-RA
Protein status:LD40940.pep: gold
Preliminary Size:1148
Sequenced Size:1337

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3165 2001-01-01 Release 2 assignment
CG3165 2001-12-12 Blastp of sequenced clone
CG3165 2003-01-01 Sim4 clustering to Release 3
CG3165 2008-04-29 Release 5.5 accounting
CG3165 2008-08-15 Release 5.9 accounting
CG3165 2008-12-18 5.12 accounting

Clone Sequence Records

LD40940.complete Sequence

1337 bp (1337 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070563

> LD40940.complete
AGAACTCCGTGTTGGTCCTCAAACATTTTGAATAAAACGAAATATATGTA
CATACTATGTACATGCACTTTTAGCCACCAGTTGCGCTCTTAATGGCTCC
GAACGATGCAGTTGCGGAGCACGCGGAGGAGCAGCCAAAGATTTCCACAT
TTGCCGTTCTGGACCTAGAGACCACCAACTTGCCTGCCTACAGGAACAAC
CGAGTGAGCATTACGGAGTTGTGCATTTACGCCTTTGAAGCCGCGCTCCT
TAAGAAGAAAAAGAAGGAGCAGGACCAGGATGAGCAGCAGGAGCTGCCAG
CGGCACCGCGGGTGCTGCACAAATTGAATGTGCTCTTCCAGCCGTCCATG
GTAGTGGACCCGGAAGCGGAGAGAATAACAGGTCTGAGCAACTACTTGCT
GGAGCGGGAGTCCCAGCTAGACACGGATGCCGCGCAACTCATCGTCAGTT
TTCTAAAGCACTTGCCGAGTCCGGTTTGCCTGGTGGCTCACAATGGTTGG
GGCTTCGATTTTCCCATTCTGAGGCAGGCATTTGAGAAACTAAACATAGA
GCTTCCCCAATCCCTGACTTGTGTTGACTCACTGCGCGCCTTCATGGAGA
TTGACGACACACAACAAAAAGAAACCAGTCAGTTGAAAGTACCCAACGAT
GTGCAGGAAATCATTCCGGAGCTGAAACCCAAACAGAATACTGAAACTTG
CCTCAAGGAGCCAGAAGCGGTCGTGAACATCGATTGGCGAACCAGAAACG
AAACCACTCCAAATCGTCCAATTTTAAAGCCTACAGAGGCATTCGCCAAG
CGTAAGTTATTACGCGACGGCGATGAGGATGACTTGGAGGAGCAGACCCC
TCCCAAGCGGAAACCCGATGAGTTTAGGTCACGACGCCAGCTGTTCAGTG
GATGCAAGTGTGCCGAGAACAAACGCTATCCCCCCCGCGGAGTTTATAAT
TTGGAAAGTCTCTACACGAGAATATTTAAGATACCAGCACTTAGTGCTCA
CCAGGCAGAGGCTGATGTAGTCATGACCACAAAACTGATACAGCATTACG
GCATTGATTTCCTGGCCTTCGCCGAGGAGCAGGCCATTCCATTCCAGCAA
GTGGTGCCACTTGGCTCTCCTGTTTGTCGAAAAAAGAGCGCAATCTAACA
AATTCTATTCCAGCATGAACTTCATTTTAAAATGTAATGGATTATTATAT
TTTTTATAATGTAGGATTTTAATAATTGATTTTTAATGTGTTATTATAAA
TATTTTTATAATAAGTATATTTGTATAAAAGTGTCCAGTCCAACCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD40940.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-RA 1465 CG3165-RA 138..1433 1..1296 6480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2977221..2978136 380..1295 4565 99.9 Plus
chr2L 23010047 chr2L 2976786..2977168 1..383 1915 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2977585..2978501 380..1296 4585 100 Plus
2L 23513712 2L 2977150..2977532 1..383 1915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2977585..2978501 380..1296 4585 100 Plus
2L 23513712 2L 2977150..2977532 1..383 1915 100 Plus
Blast to na_te.dros performed 2019-03-16 20:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 390..468 61..137 128 67.5 Plus

LD40940.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:01:58 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2976786..2977166 1..381 100 -> Plus
chr2L 2977223..2978136 382..1295 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:22 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 1..1056 93..1148 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:09 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 1..1056 93..1148 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:00 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 1..1056 93..1148 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:14 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 1..1056 93..1148 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:41 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 1..1056 93..1148 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:02 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 24..1318 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:09 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 24..1318 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:00 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 29..1323 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:14 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 24..1318 1..1295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:41 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 29..1323 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:58 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2977150..2977530 1..381 100 -> Plus
2L 2977587..2978500 382..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:58 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2977150..2977530 1..381 100 -> Plus
2L 2977587..2978500 382..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:58 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2977150..2977530 1..381 100 -> Plus
2L 2977587..2978500 382..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:00 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2977150..2977530 1..381 100 -> Plus
arm_2L 2977587..2978500 382..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:30 Download gff for LD40940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2977150..2977530 1..381 100 -> Plus
2L 2977587..2978500 382..1295 100   Plus

LD40940.pep Sequence

Translation from 92 to 1147

> LD40940.pep
MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEA
ALLKKKKKEQDQDEQQELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSN
YLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKL
NIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNT
ETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEE
QTPPKRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPAL
SAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVVPLGSPVCRKKSA
I*

LD40940.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14994-PA 362 GF14994-PA 1..359 1..343 973 55 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24904-PA 348 GG24904-PA 1..347 1..347 1438 82.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11086-PA 343 GH11086-PA 1..339 1..342 931 54.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-PB 351 CG3165-PB 1..351 1..351 1818 100 Plus
CG3165-PA 351 CG3165-PA 1..351 1..351 1818 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17603-PA 348 GI17603-PA 1..341 1..342 956 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26302-PA 335 GL26302-PA 1..335 1..347 1052 60.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16366-PA 335 GA16366-PA 1..335 1..347 1050 60.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18382-PA 353 GM18382-PA 1..353 1..351 1725 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23197-PA 353 GD23197-PA 1..353 1..351 1711 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17948-PA 344 GJ17948-PA 1..339 1..342 967 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24851-PA 367 GK24851-PA 1..359 1..343 958 55.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18196-PA 361 GE18196-PA 1..351 1..348 1501 82.9 Plus

LD40940.hyp Sequence

Translation from 92 to 1147

> LD40940.hyp
MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEA
ALLKKKKKEQDQDEQQELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSN
YLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKL
NIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNT
ETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEE
QTPPKRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPAL
SAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVVPLGSPVCRKKSA
I*

LD40940.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-PB 351 CG3165-PB 1..351 1..351 1818 100 Plus
CG3165-PA 351 CG3165-PA 1..351 1..351 1818 100 Plus