Clone LD40966 Report

Search the DGRC for LD40966

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:409
Well:66
Vector:pOT2
Associated Gene/TranscriptCG11851-RA
Protein status:LD40966.pep: gold
Preliminary Size:2243
Sequenced Size:2327

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11851 2001-01-01 Release 2 assignment
CG11851 2001-11-29 Blastp of sequenced clone
CG11851 2003-01-01 Sim4 clustering to Release 3
CG11851 2008-04-29 Release 5.5 accounting
CG11851 2008-08-15 Release 5.9 accounting
CG11851 2008-12-18 5.12 accounting

Clone Sequence Records

LD40966.complete Sequence

2327 bp (2327 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069643

> LD40966.complete
ATACTTTGCAACTTTTCCGCCGGTAATTTTCTCAGAAAGTCCGGATTATG
GCGCCTCCGGCTGCTCGCGCTCGCTACATAGCCAACAAGGCGGACAACCA
GATTCTCTCAAAGAAACCGCCCAAAAGACCGGGCCTAAATGGCAACAACA
AGACGAAGGAAGCCACACCGGCCGGCAAAAAAAAGGATAAGGATGCTAAA
AAGCGCAACCAACCCACAAGTGGTGGTCAAGAGAAGGGGCTTCCCAACCC
CATAATGCCCAGTGTTCAGACCGCCTTCAAGACCTTCGTGAGCGCCCGGT
TGTGCAGCGCCATTTGGGCGTACATAGCCGACTGCGACGAGACGTTCAAC
TACTGGGAGCCGCTGCACTACATCATTAATGGCCATGGACTCCAGACGTG
GGAGTACAGCCCGCAGTTTGGACTCCGATCGTACACCTACCTATTGCTGC
AGGGCGTGCCCGGATACTTTTACCAAAAGTTGTTCAATCCCAGTCCCATA
CTCATCTTCTACATGGTGCGATGTATGTTGGGTTTCGGTTGTGCCGTAAT
GGAGCGATATATGTACAAGTCGATTTGTCAAGAGTTTGGAATTCACATCG
GTCGTCTGTGGCTGATATTCCAGCTCTTCAGTGTGGGCATGTTTGTGTCT
AGCACCGCTCTACTGCCATCCTCCTTTTCCATGTACTTTGGCTGTGCTGC
CCTGGCCGCGTGGTGGCAACAAAATTACTGTTTTGCCATATTCCTGACAG
CAATATCCGCTTTGCTTGGTTGGCCATTTGCTGCGCTTATTGGCATACCG
CTGGTGCTGGAGATGCTTTTAAGGCAGCGTGATTGGAAGACCTTTGTTCA
GTGGACACTGATATCGGGCGCCACGGTTGCCATTCCCATGATTGCAATTG
ATACCAGCTATTTTGGCAAACTGACATTTGCTCCTCTAAATATTGTTTGG
TACAATGTGTTCACCAGTCACGGACCAAACATATTTGGTACGGAACCACT
CAGTTACTACATTATCAATGGTTTCCTTAACTTTAATATTATTTGGCTCC
TGGCACTTCAACTACCCATAATGCTGGTCATAGACTATTTGATTGTGCCA
GCCAAATCAAAGTCGACGTTAAATTTCCCCCACTACATCTCGCTGGCTCC
CCTGTACCTGTGGCTTCTCGTCTTTTTTGCCCAACCGCACAAGGAAGAGC
GCTTTCTGTTTCCCATATATCCTTTAATCTCGCTTTGCGGAGCCATCACT
GTGGATGTGTATCAGCGCATATTCTTCCGTATGAAATCGGTGGTCTTCAA
AATTAAGGCGGGAGTTCATTATCTGGACCACAGCATGTTTATTGCCATCT
TGGTAATGGTGACCAGCACATTGTTGGGACTTTCCAGGGTGTTTGCCCTG
TATAGGAACTACCATGCTCCGATGGATTTGATGCTGGAACTGAACCAGTT
TAAGGCGACACCGCAGTACGACCCGGATGTAATATACAACGTGTGTATTG
GCAAAGATTGGCATCGATATCCGGGCAGCTTCTTCTTTCCCGCCAAAAAC
TTCCGGCTGCGTTTTCTGAAATCCGAATTCCGAGGCATGCTGCCCGCGTA
CTATGACGAAGGTCAAAATGCTACTAAGGTAGTGCAACCGTATTTTAACG
ATCTCAACCAGGAAAATGAGCACATGTACTTTGACTACGACCGTTGCGAT
TTCCTCGTCGACTTTGATGAAGGCAAGTATACGGCTCTGGAACCCAATTA
TTCAAAACGATCCAAAGATTGGTCGGTGATGAAGAGTCTGCCCTTCCTCA
TTCCGGAGAAGTCGCACAAAGTGTTACGTGCCTTCTATGTGCCATTCCTG
ACCGACAATCACATTCAGTACGGAGACTTTAATCTGCTCAAGCGAAAGAC
GAAACGAAATGGCAGGTAAAGGCAGGCCCAGATAGAAAGAGTCTGGATTC
ATGCCACAAAAACTCCAATGCATATGGGGTGGCTCTCTTATTCTTTCAAA
ACAAAAAAAACGCATTAATCTTAAAGTAATGCCAAGCAAATATGCTTAAG
AAACTATAGCTTCAATTCATATTGAATTTATAGTGATTTCCAAGTATCTT
ACACCCCTGAGAGCCTCTGTCTGTATTCCAAATAATCTTTCGTACCCAGC
ATTGAATTTGTAATATCCTAATATCTGTTCTAAGTCAGTGAAGCGTTTTT
AATTCACGTTATTTTCGTTTTGTCCATGCCAAAGTTGTGAAGATCACCAG
AATCGAAGTAGAACATAAGCGTCAAGAATATAAACAACGAGATTCGTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LD40966.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11851-RA 2511 CG11851-RA 148..2445 1..2298 11490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21045948..21047199 1046..2297 6200 99.7 Plus
chr3R 27901430 chr3R 21045416..21045893 569..1046 2360 99.6 Plus
chr3R 27901430 chr3R 21044998..21045363 205..570 1830 100 Plus
chr3R 27901430 chr3R 21044736..21044940 1..205 1010 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25222867..25224119 1046..2298 6265 100 Plus
3R 32079331 3R 25222335..25222812 569..1046 2390 100 Plus
3R 32079331 3R 25221917..25222282 205..570 1830 100 Plus
3R 32079331 3R 25221655..25221859 1..205 1025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24963698..24964950 1046..2298 6265 100 Plus
3R 31820162 3R 24963166..24963643 569..1046 2390 100 Plus
3R 31820162 3R 24962748..24963113 205..570 1830 100 Plus
3R 31820162 3R 24962486..24962690 1..205 1025 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:09:26 has no hits.

LD40966.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:26 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21044736..21044940 1..205 99 -> Plus
chr3R 21044999..21045361 206..568 100 -> Plus
chr3R 21045416..21045893 569..1046 99 -> Plus
chr3R 21045949..21047199 1047..2297 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:24 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 1..1872 48..1919 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:53 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 1..1872 48..1919 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:54:17 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 1..1872 48..1919 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:18 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 1..1872 48..1919 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:14 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 1..1872 48..1919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:27 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 63..2359 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:53 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 63..2359 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:17 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 67..2363 1..2297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:18 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 63..2359 1..2297 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:14 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
CG11851-RA 67..2363 1..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:26 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25221655..25221859 1..205 100 -> Plus
3R 25221918..25222280 206..568 100 -> Plus
3R 25222335..25222812 569..1046 100 -> Plus
3R 25222868..25224118 1047..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:26 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25221655..25221859 1..205 100 -> Plus
3R 25221918..25222280 206..568 100 -> Plus
3R 25222335..25222812 569..1046 100 -> Plus
3R 25222868..25224118 1047..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:26 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25221655..25221859 1..205 100 -> Plus
3R 25221918..25222280 206..568 100 -> Plus
3R 25222335..25222812 569..1046 100 -> Plus
3R 25222868..25224118 1047..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:17 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21047377..21047581 1..205 100 -> Plus
arm_3R 21047640..21048002 206..568 100 -> Plus
arm_3R 21048057..21048534 569..1046 100 -> Plus
arm_3R 21048590..21049840 1047..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:26 Download gff for LD40966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24962749..24963111 206..568 100 -> Plus
3R 24963166..24963643 569..1046 100 -> Plus
3R 24963699..24964949 1047..2297 100   Plus
3R 24962486..24962690 1..205 100 -> Plus

LD40966.pep Sequence

Translation from 47 to 1918

> LD40966.pep
MAPPAARARYIANKADNQILSKKPPKRPGLNGNNKTKEATPAGKKKDKDA
KKRNQPTSGGQEKGLPNPIMPSVQTAFKTFVSARLCSAIWAYIADCDETF
NYWEPLHYIINGHGLQTWEYSPQFGLRSYTYLLLQGVPGYFYQKLFNPSP
ILIFYMVRCMLGFGCAVMERYMYKSICQEFGIHIGRLWLIFQLFSVGMFV
SSTALLPSSFSMYFGCAALAAWWQQNYCFAIFLTAISALLGWPFAALIGI
PLVLEMLLRQRDWKTFVQWTLISGATVAIPMIAIDTSYFGKLTFAPLNIV
WYNVFTSHGPNIFGTEPLSYYIINGFLNFNIIWLLALQLPIMLVIDYLIV
PAKSKSTLNFPHYISLAPLYLWLLVFFAQPHKEERFLFPIYPLISLCGAI
TVDVYQRIFFRMKSVVFKIKAGVHYLDHSMFIAILVMVTSTLLGLSRVFA
LYRNYHAPMDLMLELNQFKATPQYDPDVIYNVCIGKDWHRYPGSFFFPAK
NFRLRFLKSEFRGMLPAYYDEGQNATKVVQPYFNDLNQENEHMYFDYDRC
DFLVDFDEGKYTALEPNYSKRSKDWSVMKSLPFLIPEKSHKVLRAFYVPF
LTDNHIQYGDFNLLKRKTKRNGR*

LD40966.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17550-PA 619 GF17550-PA 1..619 1..623 2975 89.9 Plus
Dana\GF18995-PA 486 GF18995-PA 1..372 1..410 1666 79.1 Plus
Dana\GF18995-PA 486 GF18995-PA 371..486 496..606 524 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11376-PA 623 GG11376-PA 1..623 1..623 3306 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17379-PA 625 GH17379-PA 1..624 1..622 2907 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11851-PA 623 CG11851-PA 1..623 1..623 3351 100 Plus
PIG-B-PB 531 CG12006-PB 30..329 102..416 164 26.4 Plus
PIG-B-PA 561 CG12006-PA 30..329 102..416 164 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23923-PA 622 GI23923-PA 1..620 1..621 2877 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11986-PA 623 GL11986-PA 1..623 1..623 3004 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11235-PA 623 GA11235-PA 1..623 1..623 2999 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17819-PA 623 GM17819-PA 1..623 1..623 3310 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21188-PA 623 GD21188-PA 1..623 1..623 3321 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24015-PA 624 GJ24015-PA 1..623 1..622 2902 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13449-PA 622 GK13449-PA 1..619 1..622 2888 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23573-PA 623 GE23573-PA 1..623 1..623 3298 98.1 Plus

LD40966.hyp Sequence

Translation from 47 to 1918

> LD40966.hyp
MAPPAARARYIANKADNQILSKKPPKRPGLNGNNKTKEATPAGKKKDKDA
KKRNQPTSGGQEKGLPNPIMPSVQTAFKTFVSARLCSAIWAYIADCDETF
NYWEPLHYIINGHGLQTWEYSPQFGLRSYTYLLLQGVPGYFYQKLFNPSP
ILIFYMVRCMLGFGCAVMERYMYKSICQEFGIHIGRLWLIFQLFSVGMFV
SSTALLPSSFSMYFGCAALAAWWQQNYCFAIFLTAISALLGWPFAALIGI
PLVLEMLLRQRDWKTFVQWTLISGATVAIPMIAIDTSYFGKLTFAPLNIV
WYNVFTSHGPNIFGTEPLSYYIINGFLNFNIIWLLALQLPIMLVIDYLIV
PAKSKSTLNFPHYISLAPLYLWLLVFFAQPHKEERFLFPIYPLISLCGAI
TVDVYQRIFFRMKSVVFKIKAGVHYLDHSMFIAILVMVTSTLLGLSRVFA
LYRNYHAPMDLMLELNQFKATPQYDPDVIYNVCIGKDWHRYPGSFFFPAK
NFRLRFLKSEFRGMLPAYYDEGQNATKVVQPYFNDLNQENEHMYFDYDRC
DFLVDFDEGKYTALEPNYSKRSKDWSVMKSLPFLIPEKSHKVLRAFYVPF
LTDNHIQYGDFNLLKRKTKRNGR*

LD40966.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11851-PA 623 CG11851-PA 1..623 1..623 3351 100 Plus
CG12006-PB 531 CG12006-PB 30..329 102..416 164 26.4 Plus
CG12006-PA 561 CG12006-PA 30..329 102..416 164 26.4 Plus