Clone LD40977 Report

Search the DGRC for LD40977

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:409
Well:77
Vector:pOT2
Associated Gene/TranscriptYippee-RB
Protein status:LD40977.pep: gold
Preliminary Size:1363
Sequenced Size:1275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1989 2001-01-01 Release 2 assignment
CG1989 2003-01-01 Sim4 clustering to Release 3
CG1989 2003-01-15 Blastp of sequenced clone
Yippee 2008-04-29 Release 5.5 accounting
Yippee 2008-08-15 Release 5.9 accounting
Yippee 2008-12-18 5.12 accounting

Clone Sequence Records

LD40977.complete Sequence

1275 bp (1275 high quality bases) assembled on 2003-01-15

GenBank Submission: AY118569

> LD40977.complete
ATTCCACAGTGTTTTGTTGTTTTTTTGTGCAAGCGACGCATTAACCGTGT
TCTATATACAAATCGGGCATATATATTTATATATATCTACCATATCGGAT
TGCAAAGACCCCAAAGCTCAAGGAAAATCCCCTGACACCGGACACCTGAC
CAGGATTCCCCAAGTGGAGTCATCTTCAAACAGCTGTGAAAAAGGAACAA
AGGAGGAGCACAACAAACACACGCATACACACGTACGTACTCGGGAGAGC
GAGCGAGACGGGGTGCGACCAGAAGAGCGAGTGAGGTAGAGGAGGGAGCA
CAATGGGACGCATTTTCTTGGAACATCTTGGGGGTCTGAAACTCTTCAAT
TGCGCCCAATGCCACACGAACCTGACCAACCGCAGTCAATTGATCAGTAC
CCGATTCACAGGCGCAACAGGACGCGCCTATCTGTTTAAGCGTGTGGTCA
ACCTGACCTTCAGCAACATCCAGGAACGGGTCATGCTCACGGGTCGCCAC
ATGGTGCGCGACGTTATGTGCAAGAATTGTGGAGCCAAACTTGGCTGGAT
GTACGAGTTCGCCACCGAAGAGTCACAAAAGTGGGTAAACGCGGATAGGC
AGCTTGTCACTAGGGATTCTGGGTTATACAAGTAGTTAGTAGTTACTAAC
TTCATGTGGAAGAAATATCCTTTGAATGAACTTTCTGCGACTGCCACCAC
ACAAGACATCTTACTAATGCTCCAATTTATCTCTTAGATACAAGGAGGGT
CGCGTTATCCTGGAGTACGCCCTGATCACAGAGGCAGAGGGCTTTCCGTC
GGAGGCCGCCACCACGAGTCATTGAGCCGATTGAATATACAGCCGGAAAA
CGGGAACCACGCATTGGCGAACCTTGTGTAGCCCTAAGTATTGAGTAGAT
GGCCACAGGCGATGGCCTCTATGCATTAGACCTAGATTAGAGATCGCCGT
AGTCGGCTCCGGTGTTCGGGATACCGAAGACCGATATATCGGTTGCACAT
CCGCCACGGAGCACATGCGACTACGGCCCTGTCTTAACGTGACTTAAACG
TAATTGTAGGCACATCTAGCACGTAAGCAGCTGCGGCGCCCAATTCTACC
ATTTAAATGTCATGAGGCTGAAGTGCTAAAACGAAAAAGATGGGCTGCTA
CTCAGCTGGAACATATTCGAAACTGATGATCCACACTTGTCTTTTTCAAA
CAAGATCTCTAGGCCGTAATCAATCAGCAATAAAGTACCACAATAATCGA
ATAGTAAAAAAAAAAAAAAAAAAAA

LD40977.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Yippee-RB 1308 Yippee-RB 25..1280 1..1256 6280 100 Plus
Yippee-RA 1181 Yippee-RA 55..634 1..580 2900 100 Plus
Yippee-RA 1181 Yippee-RA 635..1153 738..1256 2595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13276689..13277527 1255..417 4180 99.9 Minus
chrX 22417052 chrX 13277589..13277817 421..193 1145 100 Minus
chrX 22417052 chrX 13277960..13278154 195..1 960 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13385913..13386752 1256..417 4200 100 Minus
X 23542271 X 13386814..13387042 421..193 1145 100 Minus
X 23542271 X 13387185..13387379 195..1 975 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13394011..13394850 1256..417 4200 100 Minus
X 23527363 X 13394912..13395140 421..193 1145 100 Minus
X 23527363 X 13395283..13395477 195..1 975 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:00:41 has no hits.

LD40977.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:23 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13276689..13277523 421..1255 99 <- Minus
chrX 13277590..13277815 195..420 100 <- Minus
chrX 13277961..13278154 1..194 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:25 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 1..333 303..635 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:19 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 1..333 303..635 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:44:46 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 1..333 303..635 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:15 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 1..333 303..635 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:55 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 1..333 303..635 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:01 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 16..1270 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:19 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 16..1270 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:44:46 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 16..1270 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:16 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 16..1270 1..1255 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:55 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
Yippee-RB 39..1293 1..1255 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:23 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
X 13385914..13386748 421..1255 100 <- Minus
X 13386815..13387040 195..420 100 <- Minus
X 13387186..13387379 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:23 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
X 13385914..13386748 421..1255 100 <- Minus
X 13386815..13387040 195..420 100 <- Minus
X 13387186..13387379 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:23 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
X 13385914..13386748 421..1255 100 <- Minus
X 13386815..13387040 195..420 100 <- Minus
X 13387186..13387379 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:44:46 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13279947..13280781 421..1255 100 <- Minus
arm_X 13280848..13281073 195..420 100 <- Minus
arm_X 13281219..13281412 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:29 Download gff for LD40977.complete
Subject Subject Range Query Range Percent Splice Strand
X 13394012..13394846 421..1255 100 <- Minus
X 13394913..13395138 195..420 100 <- Minus
X 13395284..13395477 1..194 100   Minus

LD40977.pep Sequence

Translation from 302 to 634

> LD40977.pep
MGRIFLEHLGGLKLFNCAQCHTNLTNRSQLISTRFTGATGRAYLFKRVVN
LTFSNIQERVMLTGRHMVRDVMCKNCGAKLGWMYEFATEESQKWVNADRQ
LVTRDSGLYK*

LD40977.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19499-PA 121 GF19499-PA 1..112 1..108 505 86.6 Plus
Dana\GF19108-PA 114 GF19108-PA 14..95 13..94 209 45.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19506-PA 121 GG19506-PA 1..112 1..108 504 86.6 Plus
Dere\GG18944-PA 114 GG18944-PA 14..95 13..94 209 45.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24471-PA 121 GH24471-PA 1..94 1..94 488 96.8 Plus
Dgri\GH24074-PA 114 GH24074-PA 14..95 13..94 209 45.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Yippee-PB 110 CG1989-PB 1..110 1..110 585 100 Plus
Yippee-PA 121 CG1989-PA 1..94 1..94 496 98.9 Plus
CG15309-PE 114 CG15309-PE 14..95 13..94 204 45.1 Plus
CG15309-PD 114 CG15309-PD 14..95 13..94 204 45.1 Plus
CG15309-PC 114 CG15309-PC 14..95 13..94 204 45.1 Plus
CG15309-PB 114 CG15309-PB 14..95 13..94 204 45.1 Plus
CG15309-PA 114 CG15309-PA 14..95 13..94 204 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15336-PA 121 GI15336-PA 1..94 1..94 491 96.8 Plus
Dmoj\GI15523-PA 114 GI15523-PA 14..95 13..94 209 45.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26724-PA 121 GL26724-PA 1..94 1..94 501 97.9 Plus
Dper\GL22456-PA 114 GL22456-PA 14..95 13..94 206 45.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15174-PA 121 GA15174-PA 1..94 1..94 501 97.9 Plus
Dpse\GA27919-PA 114 GA27919-PA 14..95 13..94 209 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11494-PA 121 GM11494-PA 1..112 1..108 504 86.6 Plus
Dsec\GM11334-PA 114 GM11334-PA 14..95 13..94 209 45.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15888-PA 121 GD15888-PA 1..112 1..108 504 86.6 Plus
Dsim\GD24655-PA 114 GD24655-PA 14..95 13..94 209 45.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14773-PA 121 GJ14773-PA 1..94 1..94 491 96.8 Plus
Dvir\GJ19280-PA 114 GJ19280-PA 14..95 13..94 209 45.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25643-PA 121 GK25643-PA 1..112 1..108 487 83 Plus
Dwil\GK20038-PA 114 GK20038-PA 14..95 13..94 210 45.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16160-PA 121 GE16160-PA 1..112 1..108 504 86.6 Plus
Dyak\GE15414-PA 114 GE15414-PA 14..95 13..94 209 45.1 Plus

LD40977.hyp Sequence

Translation from 302 to 634

> LD40977.hyp
MGRIFLEHLGGLKLFNCAQCHTNLTNRSQLISTRFTGATGRAYLFKRVVN
LTFSNIQERVMLTGRHMVRDVMCKNCGAKLGWMYEFATEESQKWVNADRQ
LVTRDSGLYK*

LD40977.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Yippee-PB 110 CG1989-PB 1..110 1..110 585 100 Plus
Yippee-PA 121 CG1989-PA 1..94 1..94 496 98.9 Plus
CG15309-PE 114 CG15309-PE 14..95 13..94 204 45.1 Plus
CG15309-PD 114 CG15309-PD 14..95 13..94 204 45.1 Plus
CG15309-PC 114 CG15309-PC 14..95 13..94 204 45.1 Plus