Clone LD41005 Report

Search the DGRC for LD41005

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:410
Well:5
Vector:pOT2
Associated Gene/TranscriptTAF1C-like-RA
Protein status:LD41005.pep: gold
Preliminary Size:2679
Sequenced Size:2773

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10496 2001-01-01 Release 2 assignment
CG10496 2001-09-19 Blastp of sequenced clone
CG10496 2003-01-01 Sim4 clustering to Release 3
CG10496 2008-04-29 Release 5.5 accounting
CG10496 2008-08-15 Release 5.9 accounting
CG10496 2008-12-18 5.12 accounting

Clone Sequence Records

LD41005.complete Sequence

2773 bp (2773 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058691

> LD41005.complete
AAACGTCGTGCGTTTGGCGTTTGATTGAGTCAAATTCAATTTGTTAACTA
AATTCTTTCGTGCAGAACTGGATAGCTGATCGAAGAAATCCACATGCCGC
GACGCTATCAAACAGCTCTCAATTCGGCCAAATACAGTGCCCAGGTCAAG
ACCAAAACTAGTGACAACGAATCCGATTCCGAAGATGATCTTCCGCCGGA
TCAAGATGCTGAGGATAACAATGAGCCAGATAATCTGCGCAGCATTTTGG
AAAATGCGCCGCACTTCTCTTATCCCGGCTTGAACACTGGAATGTTGGGC
CAACTCTTGTACGATCATCAGGATAATCCGAAGCAGGACTTGCCAAATTG
CTCGGTTACGGTGCCGCTACCCCTCTTCCTGGCAAAGGATGGACAAACTC
CCCGAGTGGAGGCATGCGTCCAAAGGCCATTCCGCTACGACGATTGGACA
CGGCAATTGCAATTAGGCAAGGCTATATTTGATAGGCGACTTAAAAATAT
GAGACAGCGTGTACAGAAGCAGGAGCAAGGTGTACACGATGCCAGTCTGT
TTGAGATGGCTGAGCACATAGCCCAACAGGAGAATTCCTTCTTCAGGGAC
AGCTACGATTACTACTACACAGGCGGAAACCTAAACACGATTCCGTTTGA
TGGAAACGATCAGCTGGCCATGCATGTCAGCGGTAATAAGCTCAGAGATT
TGCACTTTTCCCGAGATTATGGTGAGGCGGAGTTTTGGCAACCATTGCAT
TCGGCTACGATAGAGGAATCCTCCAGCGAAGTCTTTGAACTTCTTCCGCT
CCACAATTTAAATCGCAGTCAAATGTTCCTGGCACGGTTGCTGAAGGAGG
TTTCCCTATACGAACTTAAATGCAAAGACGAACAGGATTCGGATTCAGAT
TACGAACTCATTCGCCATTGCATGTTTAGCAGTCAAGTAGCTCCTTTTAC
AAGCGCTGCACAATCATTGGCCAATGCCAATACATTGGCCTTAGCTAGCC
AGGATAGGTCTTTGCGCTTCGTGGATATTTCGACACAACAGGATATAGCC
AAGCTTGATGTTTGCTTGCTAAAAGGACTGAAGAAAACCTCGAGTACCTG
GGCACAGTTAAAGCAAGCAGAGGAAAGCACCTTTCACTGCCTAACACAGC
CAGTTTTGTTTACCGTAGATGTGCGATGCAATCTGCCTCTGAATCCCTGC
TTTGCCAGCGGCGTTCACTCAAAAGCTTGCGAGAGGTTCTCTTGTTTGGC
CAAGGGTGTGAATCCTAATCTCTTGTATGTGGCTAGTAATCACAACTTCC
ACTGTTTGGATATCAGATGCTTGGGTAAAAAGCTGACCGATCGAGCTGTC
GTCACCTGGACGCATCAGATGACCTATCCACCCTGTTTTATTGACACAAG
CGTTCACCAGGACAGTGAATATATTGCGTTAGGTGGACTCTTACCCAAAG
ATTTGCGAATTTGTGAACTGCAAGGAGCTCAGGCAAAAAGTGTCGATGAA
ATGTTCTCGCCGGCAATACCATTTGCGCCGGTAACCCTGGAAGAAGCTTT
AATAGATGCTCGCTTGGGAGGATTTGTGGATGTCTATGCTGATATAGCAG
AGCGGGTAACGACCTGCATTACAGGAATGCGCTTTATTGGCTTAGAGGGG
GCCAGTGATCAAGCTTTTACCCAGTTGCTAACCTCCAACAGCTTGGGAGA
TGTTTACTGCCAAAGACTAACGCTTAGGGATGAAGAGGAGCATGTCCAGC
AGATCAGAACCGGAACTCATACAACGGAAGCCATTCGCTACCTTGCCAAT
GCCGTTAATGAGCGCGTCCAACGCGAGAACATCCGCTGCACACAAGTCCA
GTCGATACCAGAGATAAGAGACATCTTTCGAGATGGTGCCAAAAGATCAA
AACCTGAAGAAAAACCTTTAATCGTAGAGGAAATCGAAATTGACTATGGC
ATAGAAGATACTGATGTTTCAGAAGATGAAAGCCCAGCCTCTGAAAAGGT
AAAGGAAGAACCTTCGGAATCCAAGAAAGGTGGTAAGAAAACGCCTAAGA
AAAAAACCAAGGTGAAACCAAAACGGCAACCCAAAAGGAAAGCTGCCAGT
AAGAGAAATGTTAAAAAGCAGAAGAGCATCAGTCGCGGTCCCTGGCAGAA
ATCCGCTTACAAGCTGTCCCACTACACGGACATGATGTCGACCCGTTTGC
TGGACGTGTGGGATATGGAGGAGTACGACACCACACGAGACGTAACAAGA
GAAATGTTCGATGAGCGTATAAAGGGGAAGGAGCTGGAACCTGAACAACG
CATGGCCAATTGGTTGGAACAATTGCCCAGTCAGACAGTGGTACCCACTG
AGGACGAGGTGACCGAGGGAAATCCCGACATGGTTCCCGGTACAAGTCTA
CCAAAGCTATATGGCGCCACTACAGCGAACTATTCAGTCATTCCAGCCCT
TAATTCCGATCAGGACATCGGAGAGCGCCTTTTGAGTCCCAAAAAGGAAT
CGCCTGTTGAATTTGGCCGCGAGTATTCTATCTTGCTGCCCGGCCAGAAT
ACTATCATCGAGGACTATCCCTGTGCCCCGCCAGCTAAGAGGCCCAAGGT
TAAACACGTAAAGGGTTTCTAGCTTAAGTTAGAGTTGTTAACCTTAATTT
AAATTTAACAAAAATAAATAGCAGATTATAAAGTATATTAAATAGAAGTA
AGTAGATTTAGAATTTAGATTTCTGCCAACAATATTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

LD41005.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10496.a 2957 CG10496.a 186..2924 1..2739 13695 100 Plus
CG10496-RA 3065 CG10496-RA 256..2994 1..2739 13695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17385391..17388035 2736..92 13150 99.8 Minus
chr2R 21145070 chr2R 17388113..17388203 91..1 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21498900..21501547 2739..92 13240 100 Minus
2R 25286936 2R 21501625..21501715 91..1 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21500099..21502746 2739..92 13240 100 Minus
2R 25260384 2R 21502824..21502914 91..1 455 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:00:46 has no hits.

LD41005.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:26 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17385391..17388035 92..2736 99 <- Minus
chr2R 17388113..17388203 1..91 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:27 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 1..2529 94..2622 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:28 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 1..2529 94..2622 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:45:23 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 1..2529 94..2622 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:52 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 1..2529 94..2622 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:02 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
TAF1C-like-RA 1..2529 94..2622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:37 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 256..2991 1..2736 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:28 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 256..2991 1..2736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:23 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 18..2753 1..2736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:52 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
CG10496-RA 256..2991 1..2736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:02 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
TAF1C-like-RA 18..2753 1..2736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:26 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21501625..21501715 1..91 100   Minus
2R 21498903..21501547 92..2736 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:26 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21501625..21501715 1..91 100   Minus
2R 21498903..21501547 92..2736 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:26 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21501625..21501715 1..91 100   Minus
2R 21498903..21501547 92..2736 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:23 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17386408..17389052 92..2736 100 <- Minus
arm_2R 17389130..17389220 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:13 Download gff for LD41005.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21500102..21502746 92..2736 100 <- Minus
2R 21502824..21502914 1..91 100   Minus

LD41005.pep Sequence

Translation from 93 to 2621

> LD41005.pep
MPRRYQTALNSAKYSAQVKTKTSDNESDSEDDLPPDQDAEDNNEPDNLRS
ILENAPHFSYPGLNTGMLGQLLYDHQDNPKQDLPNCSVTVPLPLFLAKDG
QTPRVEACVQRPFRYDDWTRQLQLGKAIFDRRLKNMRQRVQKQEQGVHDA
SLFEMAEHIAQQENSFFRDSYDYYYTGGNLNTIPFDGNDQLAMHVSGNKL
RDLHFSRDYGEAEFWQPLHSATIEESSSEVFELLPLHNLNRSQMFLARLL
KEVSLYELKCKDEQDSDSDYELIRHCMFSSQVAPFTSAAQSLANANTLAL
ASQDRSLRFVDISTQQDIAKLDVCLLKGLKKTSSTWAQLKQAEESTFHCL
TQPVLFTVDVRCNLPLNPCFASGVHSKACERFSCLAKGVNPNLLYVASNH
NFHCLDIRCLGKKLTDRAVVTWTHQMTYPPCFIDTSVHQDSEYIALGGLL
PKDLRICELQGAQAKSVDEMFSPAIPFAPVTLEEALIDARLGGFVDVYAD
IAERVTTCITGMRFIGLEGASDQAFTQLLTSNSLGDVYCQRLTLRDEEEH
VQQIRTGTHTTEAIRYLANAVNERVQRENIRCTQVQSIPEIRDIFRDGAK
RSKPEEKPLIVEEIEIDYGIEDTDVSEDESPASEKVKEEPSESKKGGKKT
PKKKTKVKPKRQPKRKAASKRNVKKQKSISRGPWQKSAYKLSHYTDMMST
RLLDVWDMEEYDTTRDVTREMFDERIKGKELEPEQRMANWLEQLPSQTVV
PTEDEVTEGNPDMVPGTSLPKLYGATTANYSVIPALNSDQDIGERLLSPK
KESPVEFGREYSILLPGQNTIIEDYPCAPPAKRPKVKHVKGF*

LD41005.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12093-PA 838 GF12093-PA 1..838 1..842 2508 58.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20774-PA 840 GG20774-PA 1..840 1..842 3604 81.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20054-PA 890 GH20054-PA 1..890 1..842 1668 42.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
TAF1C-like-PA 842 CG10496-PA 1..842 1..842 4417 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20464-PA 882 GI20464-PA 1..882 1..842 1800 43.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17490-PA 856 GL17490-PA 1..856 1..842 1959 48.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10354-PA 856 GA10354-PA 1..856 1..842 1946 48.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15718-PA 842 GM15718-PA 1..842 1..842 4044 91.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25196-PA 835 GD25196-PA 1..835 1..842 4027 91 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22313-PA 855 GJ22313-PA 1..855 1..842 1802 44.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20740-PA 873 GK20740-PA 1..873 1..842 1831 45.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13711-PA 839 GE13711-PA 1..839 1..842 3547 82.2 Plus

LD41005.hyp Sequence

Translation from 93 to 2621

> LD41005.hyp
MPRRYQTALNSAKYSAQVKTKTSDNESDSEDDLPPDQDAEDNNEPDNLRS
ILENAPHFSYPGLNTGMLGQLLYDHQDNPKQDLPNCSVTVPLPLFLAKDG
QTPRVEACVQRPFRYDDWTRQLQLGKAIFDRRLKNMRQRVQKQEQGVHDA
SLFEMAEHIAQQENSFFRDSYDYYYTGGNLNTIPFDGNDQLAMHVSGNKL
RDLHFSRDYGEAEFWQPLHSATIEESSSEVFELLPLHNLNRSQMFLARLL
KEVSLYELKCKDEQDSDSDYELIRHCMFSSQVAPFTSAAQSLANANTLAL
ASQDRSLRFVDISTQQDIAKLDVCLLKGLKKTSSTWAQLKQAEESTFHCL
TQPVLFTVDVRCNLPLNPCFASGVHSKACERFSCLAKGVNPNLLYVASNH
NFHCLDIRCLGKKLTDRAVVTWTHQMTYPPCFIDTSVHQDSEYIALGGLL
PKDLRICELQGAQAKSVDEMFSPAIPFAPVTLEEALIDARLGGFVDVYAD
IAERVTTCITGMRFIGLEGASDQAFTQLLTSNSLGDVYCQRLTLRDEEEH
VQQIRTGTHTTEAIRYLANAVNERVQRENIRCTQVQSIPEIRDIFRDGAK
RSKPEEKPLIVEEIEIDYGIEDTDVSEDESPASEKVKEEPSESKKGGKKT
PKKKTKVKPKRQPKRKAASKRNVKKQKSISRGPWQKSAYKLSHYTDMMST
RLLDVWDMEEYDTTRDVTREMFDERIKGKELEPEQRMANWLEQLPSQTVV
PTEDEVTEGNPDMVPGTSLPKLYGATTANYSVIPALNSDQDIGERLLSPK
KESPVEFGREYSILLPGQNTIIEDYPCAPPAKRPKVKHVKGF*

LD41005.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
TAF1C-like-PA 842 CG10496-PA 1..842 1..842 4417 100 Plus