Clone LD41062 Report

Search the DGRC for LD41062

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:410
Well:62
Vector:pOT2
Associated Gene/TranscriptDip-B-RA
Protein status:LD41062.pep: gold
Preliminary Size:2031
Sequenced Size:2030

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9285 2001-01-01 Release 2 assignment
CG9285 2001-07-04 Blastp of sequenced clone
CG9285 2003-01-01 Sim4 clustering to Release 3
Dip-B 2008-04-29 Release 5.5 accounting
Dip-B 2008-08-15 Release 5.9 accounting
Dip-B 2008-12-18 5.12 accounting

Clone Sequence Records

LD41062.complete Sequence

2030 bp (2030 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051926

> LD41062.complete
CCGGCTGGTCTACTGTGAAAAAAAAACCTGGTTGCCATTCCTTTGTTTTT
TGCCACTGGTTAGTTTTGGCCCAGAAACTGCATCCACCGTGGACGTGACT
GGCAAGAGGAACCCACAATAACAATTCCGAAGACCGAGCGACATCCCGCT
CCCAAGTTTCCAGTTTCCAGCTGCAGCGCTTTGTTCCCATCAGGGAGGTT
CAGTGACGCCCCACTTGCCGATCAACCAAGTCGCGTGAGCTGCCTGCGAA
AAAGTACTCATCATGGGTATCGAAAAAATTCTACCATGCACCCTCCGGCT
GAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATCGATC
GCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCGCAAA
TTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCAACGT
GGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTACGACG
ATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGTTCTC
AAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGCGCTT
CCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTTTATG
TGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGTGACC
ACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCCAGGA
AGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGAGTTG
GGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAAGCCG
TTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGTTGCA
GAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCAGTGG
AGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAAGCCG
GCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACACCGG
TGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGCGACA
AGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCAACTG
CAACCGGATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCAATTC
CGTGGGCGAGGAGTGCTACGTGGCCGATGAGGTTATCACCTCGCGAGCTG
GTCTTCATGTGAGGATTGGAAATACTGATGCCGAGGGTCGCATGTGCATG
ACCGATGCCCTGTGCCGCATGAAGGAGTTGGTCGTGGAGCAGAATCTCCC
GGATCCGCATCTTTTCACCATTGCCACCTTGACTGGTCACGCCTTCATCT
CGGCAGGTGAGGGTCAGTCGATTGCCATCGATAACAGCGTGGCCCATCGG
GAGGATCACGCCAGAAGACTGCAGGCTGCTGGACAGGCCTTCGGAGAGCC
CTTCGAAGTGTCCATTCTCCGTCCCAGTGACTTCTCTTTTAACGCTGGAA
AGGTGATTGGCGAGGATTTGGTGCAGGCCAATAATGCCCCGTCGGTGAGG
ACTCCTCGCGGTCACCAGGTGCCCGCCGCCTTTATGATTAAGGCTTCTGG
ACTGGACAAACACGGGTTGGATTCAATGCTGCCCATTAAGTACACCCATA
TTGATATCGCCGGCAGTGCCGGTGAGCACCCAGCGATGCCCACAGCTGCC
CCTCTTGTTTCCCTGGTGAAGACCCATCTGCAGAAGTAAATCATGTCCAC
CTAATATTCAGGAGGATGTGTACACGATCACCACAAACAGTACTTATACA
CCCACGTGCTTAGCTAACCAACAATATTATCCTACTAACTGCATCACTGT
TTTTTAATAAAGGCAAAACCGAGTTCAGATTGTATTCATAAATGTATGTC
ACTAATTTGGTAATCGTTTACAAATAAATGTGAAAATGATTTGTTTTTTT
CCTTAAGCTTACAAAAAAAAAAAAAAAAAA

LD41062.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RA 2100 Dip-B-RA 31..2045 1..2015 10075 100 Plus
Dip-B.b 2032 Dip-B.b 21..2032 1..2015 10005 99.8 Plus
Dip-B-RC 2103 Dip-B-RC 176..2048 143..2015 9365 100 Plus
Dip-B-RC 2103 Dip-B-RC 21..162 1..142 710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9609208..9610568 652..2012 6730 99.6 Plus
chr3R 27901430 chr3R 9608709..9608986 277..554 1360 99.3 Plus
chr3R 27901430 chr3R 9607204..9607345 1..142 710 100 Plus
chr3R 27901430 chr3R 9607600..9607733 143..276 670 100 Plus
chr3R 27901430 chr3R 9609051..9609151 552..652 505 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784316..13785679 652..2015 6820 100 Plus
3R 32079331 3R 13783817..13784094 277..554 1390 100 Plus
3R 32079331 3R 13782310..13782451 1..142 710 100 Plus
3R 32079331 3R 13782708..13782841 143..276 670 100 Plus
3R 32079331 3R 13784159..13784259 552..652 505 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13525147..13526510 652..2015 6820 100 Plus
3R 31820162 3R 13524648..13524925 277..554 1390 100 Plus
3R 31820162 3R 13523141..13523282 1..142 710 100 Plus
3R 31820162 3R 13523539..13523672 143..276 670 100 Plus
3R 31820162 3R 13524990..13525090 552..652 505 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:41:01 has no hits.

LD41062.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:42:04 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9607204..9607345 1..142 100 -> Plus
chr3R 9607600..9607733 143..276 100 -> Plus
chr3R 9608709..9608985 277..553 99 -> Plus
chr3R 9609053..9609151 554..652 100 -> Plus
chr3R 9609209..9610568 653..2012 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:29 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 1..1527 263..1789 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:56 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 1..1527 263..1789 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 1..1527 263..1789 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:23 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 1..1527 263..1789 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:34 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 1..1527 263..1789 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:23 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 21..2032 1..2012 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:56 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 21..2032 1..2012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 21..2032 1..2012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:23 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 21..2032 1..2012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:34 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 23..2034 1..2012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:04 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13782708..13782841 143..276 100 -> Plus
3R 13783817..13784093 277..553 100 -> Plus
3R 13784161..13784259 554..652 100 -> Plus
3R 13782310..13782451 1..142 100 -> Plus
3R 13784317..13785676 653..2012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:04 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13782708..13782841 143..276 100 -> Plus
3R 13783817..13784093 277..553 100 -> Plus
3R 13784161..13784259 554..652 100 -> Plus
3R 13782310..13782451 1..142 100 -> Plus
3R 13784317..13785676 653..2012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:04 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13782708..13782841 143..276 100 -> Plus
3R 13783817..13784093 277..553 100 -> Plus
3R 13784161..13784259 554..652 100 -> Plus
3R 13782310..13782451 1..142 100 -> Plus
3R 13784317..13785676 653..2012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:08 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9608032..9608173 1..142 100 -> Plus
arm_3R 9608430..9608563 143..276 100 -> Plus
arm_3R 9609539..9609815 277..553 100 -> Plus
arm_3R 9609883..9609981 554..652 100 -> Plus
arm_3R 9610039..9611398 653..2012 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:29 Download gff for LD41062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13523141..13523282 1..142 100 -> Plus
3R 13523539..13523672 143..276 100 -> Plus
3R 13524648..13524924 277..553 100 -> Plus
3R 13524992..13525090 554..652 100 -> Plus
3R 13525148..13526507 653..2012 100   Plus

LD41062.hyp Sequence

Translation from 262 to 1788

> LD41062.hyp
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQK*

LD41062.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-PD 508 CG9285-PD 1..508 1..508 2606 100 Plus
Dip-B-PB 508 CG9285-PB 1..508 1..508 2606 100 Plus
Dip-B-PC 508 CG9285-PC 1..508 1..508 2606 100 Plus
Dip-B-PA 508 CG9285-PA 1..508 1..508 2606 100 Plus
grsm-PB 558 CG7340-PB 292..434 244..392 241 40 Plus

LD41062.pep Sequence

Translation from 262 to 1788

> LD41062.pep
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQK*

LD41062.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18621-PA 572 GF18621-PA 1..509 1..508 2425 88 Plus
Dana\GF18094-PA 564 GF18094-PA 298..540 244..505 250 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19841-PA 508 GG19841-PA 1..508 1..508 2628 96.7 Plus
Dere\GG17089-PA 656 GG17089-PA 356..632 205..505 249 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14277-PA 506 GH14277-PA 1..504 1..506 2025 72.9 Plus
Dgri\GH19202-PA 558 GH19202-PA 236..534 188..505 254 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-PD 508 CG9285-PD 1..508 1..508 2606 100 Plus
Dip-B-PB 508 CG9285-PB 1..508 1..508 2606 100 Plus
Dip-B-PC 508 CG9285-PC 1..508 1..508 2606 100 Plus
Dip-B-PA 508 CG9285-PA 1..508 1..508 2606 100 Plus
grsm-PB 558 CG7340-PB 292..434 244..392 241 40 Plus
grsm-PF 655 CG7340-PF 389..531 244..392 241 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23169-PA 507 GI23169-PA 1..505 1..506 2072 74.5 Plus
Dmoj\GI24235-PA 529 GI24235-PA 263..505 244..505 245 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23475-PA 508 GL23475-PA 1..506 1..506 2345 84.8 Plus
Dper\GL23157-PA 551 GL23157-PA 278..527 236..505 256 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21669-PA 508 GA21669-PA 1..506 1..506 2342 84.6 Plus
Dpse\GA20276-PA 551 GA20276-PA 278..527 236..505 256 31.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24136-PA 508 GM24136-PA 1..508 1..508 2667 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18934-PA 508 GD18934-PA 1..508 1..508 2680 99 Plus
Dsim\GD20533-PA 498 GD20533-PA 291..416 244..375 229 42.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14485-PA 507 GJ14485-PA 1..505 1..506 2069 74.7 Plus
Dvir\GJ10808-PA 555 GJ10808-PA 231..531 199..505 248 30.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14202-PA 508 GK14202-PA 1..506 1..506 2158 78.1 Plus
Dwil\GK10859-PA 562 GK10859-PA 238..538 199..505 254 30.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26302-PA 508 GE26302-PA 1..508 1..508 2640 97.2 Plus
Dyak\GE24479-PA 657 GE24479-PA 392..633 245..505 243 31.4 Plus