Clone LD41157 Report

Search the DGRC for LD41157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:411
Well:57
Vector:pOT2
Associated Gene/TranscriptGIIIspla2-RB
Protein status:LD41157.pep: gold
Preliminary Size:1306
Sequenced Size:1206

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1583 2001-01-01 Release 2 assignment
CG1583 2002-06-12 Blastp of sequenced clone
GIIIspla2 2008-04-29 Release 5.5 accounting
GIIIspla2 2008-08-15 Release 5.9 accounting
GIIIspla2 2008-12-18 5.12 accounting

Clone Sequence Records

LD41157.complete Sequence

1206 bp (1206 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122184

> LD41157.complete
AGCAATCAGTTACGGGCACCGTACGCTGAAAAAAAGAAAAGCAGAACGAA
AACAGACAGAACTCAACACGATGTGGATCGCGAACGAACGCACTATCTGC
GCACTGATGCCACTGGTGATTTTGGCGACCTGGCAGCTGTGCCTTCTTCC
CGGGACGGATGCCAAGCACTTGGCCATCAGATTGCGCGACCCTCAAAGCG
AAATCGAATCGGAAACGGTGCCCCTAGCCCATGTCCACAGCCACAGCCAC
ACGGACGAGAGTGGCGTTCGCGGTGCTGCTGCAGTGCATCGTCGGGAGCG
GCGGCAACTCTCCGATTGGCTAATTGCGCCCAACACGCGGTGGTGCGGAC
GCGGCAATCTGGCCAATGGAACGTACAACGATCTGGGCGGCGCTTCCAAG
GCGGACAAATGCTGCCGGAAGCATGATCACTGCAAAATGTGGATCGATGG
CATGTCCAATCGCTATGATCTCTTCAACTATCGACCGTACACGCTGTCAC
ACTGCAGCTGTGATCTACGGTTCCGCACGTGTCTGAAGATGGCCGGCGAC
GAGGATGCGAACGCCATCGGAAAGCTCTTCTTCAATGTCGTGCAGACGCA
GTGTTTCGGCCTGAAGGCCGAGACCGTTTGCGTTCAGCGGGGCGGCTCCG
GAAAGGAGACCGATCCGTGCCTCAAGGAGGAGGTGCGTCACAAGGCCTTC
CTGCGCGACAACAAGCGGTTCTAAGAGACCTAGTTGGCCCACGACGACCG
GCAGGAATTTGTGTATCCCAAAGTCGCCTGCCCGCAAAAGGAGCTAACCA
AACATACCGCCACATAGTGCTGCAATTGGGTTTGAAACTCAATGGGAGAG
CATGGCAAAACACCATCATCATCCGTACTTAGATGAACAGATTGTGAGAG
GAGGAGGAGGAGAGACAGCCAGAGACACCACGTCTATGTATTAGGCTAAA
TTACCAACATATTTATATGACTGTCAAGTGCTATTATAATGCGTAGTAGT
CGATACGATGTACTAACACACCTAGTTGTAGTCACTCAATCTAGTTTAGG
CCAACGAATCGATAACAGGCTGCCAGAAAACCAAGTTTTTTTTAAACTAG
CTGTAGACCCCATAGATACCCTATAAACCACCTGTGCGTAATTAGTTGTA
GGCGTAGTAACTTAATAAATGAAATTTCCAAAGAGTAAAAAAAAAAAAAA
AAAAAA

LD41157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
GIIIspla2-RA 1430 GIIIspla2-RA 148..1337 1..1190 5950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8049490..8050226 1..737 3625 99.5 Plus
chrX 22417052 chrX 8050418..8050872 732..1186 2260 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8157654..8158390 1..737 3670 99.9 Plus
X 23542271 X 8158563..8159021 732..1190 2295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8165752..8166488 1..737 3670 99.8 Plus
X 23527363 X 8166661..8167119 732..1190 2295 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:18:07 has no hits.

LD41157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:19:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8049490..8050222 1..733 99 -> Plus
chrX 8050420..8050872 734..1186 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:31 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RA 96..819 1..724 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:19 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 1..654 71..724 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:17 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 1..654 71..724 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RA 96..819 1..724 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:07 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 1..654 71..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:57 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RA 108..1293 1..1186 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:19 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 1..1186 1..1186 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:17 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 27..1212 1..1186 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RA 108..1293 1..1186 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:07 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
GIIIspla2-RB 27..1212 1..1186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
X 8157654..8158386 1..733 100 -> Plus
X 8158565..8159017 734..1186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
X 8157654..8158386 1..733 100 -> Plus
X 8158565..8159017 734..1186 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:05 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
X 8157654..8158386 1..733 100 -> Plus
X 8158565..8159017 734..1186 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:17 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8052598..8053050 734..1186 100   Plus
arm_X 8051687..8052419 1..733 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:51 Download gff for LD41157.complete
Subject Subject Range Query Range Percent Splice Strand
X 8165752..8166484 1..733 100 -> Plus
X 8166663..8167115 734..1186 100   Plus

LD41157.hyp Sequence

Translation from 0 to 723

> LD41157.hyp
AISYGHRTLKKRKAERKQTELNTMWIANERTICALMPLVILATWQLCLLP
GTDAKHLAIRLRDPQSEIESETVPLAHVHSHSHTDESGVRGAAAVHRRER
RQLSDWLIAPNTRWCGRGNLANGTYNDLGGASKADKCCRKHDHCKMWIDG
MSNRYDLFNYRPYTLSHCSCDLRFRTCLKMAGDEDANAIGKLFFNVVQTQ
CFGLKAETVCVQRGGSGKETDPCLKEEVRHKAFLRDNKRF*

LD41157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
GIIIspla2-PC 217 CG1583-PC 1..217 24..240 1193 100 Plus
GIIIspla2-PB 217 CG1583-PB 1..217 24..240 1193 100 Plus
CG3009-PD 239 CG3009-PD 103..209 108..215 251 44.4 Plus
CG3009-PB 342 CG3009-PB 103..207 108..213 245 44.3 Plus
CG3009-PA 342 CG3009-PA 103..207 108..213 245 44.3 Plus

LD41157.pep Sequence

Translation from 1 to 723

> LD41157.pep
AISYGHRTLKKRKAERKQTELNTMWIANERTICALMPLVILATWQLCLLP
GTDAKHLAIRLRDPQSEIESETVPLAHVHSHSHTDESGVRGAAAVHRRER
RQLSDWLIAPNTRWCGRGNLANGTYNDLGGASKADKCCRKHDHCKMWIDG
MSNRYDLFNYRPYTLSHCSCDLRFRTCLKMAGDEDANAIGKLFFNVVQTQ
CFGLKAETVCVQRGGSGKETDPCLKEEVRHKAFLRDNKRF*

LD41157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21312-PA 204 GF21312-PA 27..204 50..240 752 74.9 Plus
Dana\GF20851-PA 330 GF20851-PA 97..202 107..213 243 43.9 Plus
Dana\GF22231-PA 309 GF22231-PA 200..293 108..202 226 43.2 Plus
Dana\GF11953-PA 172 GF11953-PA 25..125 107..209 184 36.9 Plus
Dana\GF12957-PA 186 GF12957-PA 43..143 107..208 164 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19301-PA 217 GG19301-PA 1..217 24..240 1074 90.4 Plus
Dere\GG18524-PA 342 GG18524-PA 102..207 107..213 241 43.9 Plus
Dere\GG17755-PA 309 GG17755-PA 200..293 108..202 237 44.2 Plus
Dere\GG10751-PA 173 GG10751-PA 22..145 103..228 197 34.9 Plus
Dere\GG23279-PA 186 GG23279-PA 43..163 107..228 157 29.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24101-PA 230 GH24101-PA 92..230 98..240 582 74.8 Plus
Dgri\GH17900-PA 337 GH17900-PA 102..207 107..213 239 43.9 Plus
Dgri\GH12690-PA 321 GH12690-PA 212..305 108..202 229 43.2 Plus
Dgri\GH21166-PA 189 GH21166-PA 43..167 107..232 185 32.6 Plus
Dgri\GH20736-PA 172 GH20736-PA 22..116 107..203 183 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
GIIIspla2-PC 217 CG1583-PC 1..217 24..240 1193 100 Plus
GIIIspla2-PB 217 CG1583-PB 1..217 24..240 1193 100 Plus
CG3009-PD 239 CG3009-PD 103..209 108..215 251 44.4 Plus
CG3009-PB 342 CG3009-PB 103..207 108..213 245 44.3 Plus
CG3009-PA 342 CG3009-PA 103..207 108..213 245 44.3 Plus
CG42237-PB 309 CG42237-PB 200..292 108..201 237 44.7 Plus
CG42237-PA 363 CG4346-PA 254..346 108..201 237 44.7 Plus
CG30503-PB 173 CG30503-PB 26..145 107..228 194 33.6 Plus
CG30503-PA 173 CG30503-PA 26..145 107..228 194 33.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14370-PA 213 GI14370-PA 54..213 80..240 661 75.2 Plus
Dmoj\GI16365-PA 312 GI16365-PA 181..296 85..202 242 39.8 Plus
Dmoj\GI20819-PA 165 GI20819-PA 22..116 107..203 180 35.1 Plus
Dmoj\GI18761-PA 184 GI18761-PA 43..167 107..232 167 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20365-PA 206 GL20365-PA 25..206 57..240 662 67.9 Plus
Dper\GL14551-PA 359 GL14551-PA 98..203 107..213 243 43.9 Plus
Dper\GL14950-PA 352 GL14950-PA 181..293 88..202 228 39.1 Plus
Dper\GL10932-PA 168 GL10932-PA 25..125 107..209 170 35.9 Plus
Dper\GL11167-PA 186 GL11167-PA 43..130 107..194 165 36 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13978-PA 206 GA13978-PA 25..206 57..240 662 67.9 Plus
Dpse\GA15641-PA 334 GA15641-PA 98..203 107..213 243 43.9 Plus
Dpse\GA18124-PA 309 GA18124-PA 181..293 88..202 230 39.1 Plus
Dpse\GA15891-PA 168 GA15891-PA 25..125 107..209 173 35.9 Plus
Dpse\GA10773-PA 186 GA10773-PA 43..130 107..194 165 36 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11233-PA 218 GM11233-PA 1..218 24..240 1131 96.3 Plus
Dsec\GM12671-PA 340 GM12671-PA 100..205 107..213 241 43.9 Plus
Dsec\GM11601-PA 363 GM11601-PA 254..347 108..202 236 44.2 Plus
Dsec\GM20797-PA 173 GM20797-PA 26..145 107..228 187 33.6 Plus
Dsec\GM20955-PA 186 GM20955-PA 43..163 107..228 164 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24767-PA 135 GD24767-PA 1..108 24..130 534 94.5 Plus
Dsim\GD17099-PA 277 GD17099-PA 168..261 108..202 236 44.2 Plus
Dsim\GD10259-PA 173 GD10259-PA 26..130 107..213 181 34.6 Plus
Dsim\GD10480-PA 186 GD10480-PA 43..163 107..228 162 30.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19410-PA 229 GJ19410-PA 88..229 98..240 625 78.3 Plus
Dvir\GJ16735-PA 321 GJ16735-PA 171..305 66..202 241 36.5 Plus
Dvir\GJ16381-PA 337 GJ16381-PA 101..206 107..213 239 43.9 Plus
Dvir\GJ20552-PA 166 GJ20552-PA 22..126 107..213 210 37.4 Plus
Dvir\GJ21785-PA 187 GJ21785-PA 43..167 107..232 185 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19962-PA 206 GK19962-PA 49..206 80..240 662 77.6 Plus
Dwil\GK25148-PA 983 GK25148-PA 97..202 107..213 255 43.9 Plus
Dwil\GK17378-PA 314 GK17378-PA 205..298 108..202 232 43.2 Plus
Dwil\GK22012-PA 157 GK22012-PA 12..117 107..213 197 37 Plus
Dwil\GK21320-PA 188 GK21320-PA 45..165 107..228 171 30.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15768-PA 217 GE15768-PA 1..217 24..240 1057 90.8 Plus
Dyak\GE16841-PA 345 GE16841-PA 102..207 107..213 242 43.9 Plus
Dyak\GE17044-PA 262 GE17044-PA 153..246 108..202 237 44.2 Plus
Dyak\GE24036-PA 173 GE24036-PA 26..138 107..220 190 36.5 Plus
Dyak\GE19126-PA 186 GE19126-PA 43..163 107..228 158 28.5 Plus