Clone LD41184 Report

Search the DGRC for LD41184

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:411
Well:84
Vector:pOT2
Associated Gene/TranscriptCG9098-RB
Protein status:LD41184.pep: gold
Preliminary Size:2795
Sequenced Size:2967

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9098 2001-11-29 Blastp of sequenced clone
CG9098 2003-01-01 Sim4 clustering to Release 3
CG9098 2008-04-29 Release 5.5 accounting
CG9098 2008-08-15 Release 5.9 accounting
CG9098 2008-12-18 5.12 accounting

Clone Sequence Records

LD41184.complete Sequence

2967 bp (2967 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069645

> LD41184.complete
TTCAGACTACTACAATACGAAGGACCTTAAACTGCACTCCTTTTTTTTTC
GAGACTAGTTCTGTGCTAGTGAAGTCTATCTATTTTCAAATGGAGAGTTT
TGTTTAGAAATCGTATTATTCAGGCAGCTGGTGAATCGAGTTCTTTCGTA
CTACTGAACAATTGGGTTTGGGTGTGTCCTGTCCTAAATTTTCTACTACA
AAATGGGCGTAGCAGCTACGAGGAACTGAGGCCGCGCTCCAAGTGCAACA
GTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTATGGGAGCAGC
AATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAACA
GGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACG
CCAGGGAGCTGCGTTCCCACGCCTGGTACCACGGCGCACTGCCACGCCAG
CGGGCCGAGGAGATCGTGCAGCGCGAAGGCGACTTCCTGGTCCGCGACTG
CGCCTCCCAGCCGGACAACTATGTGCTCAGTTGCCGGAGCAAAGCGGCTG
TACTGCACTTCGTACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTAC
GAACGTGTGCAGTACCAGTTTGAGGAGGATGCCTTCGATACGGTGCCCGA
CCTAATTACCTTCTACGTGGGATCCGGCAAGCCCATCTCGTCAGCATCGG
GAGCGCTCATTCAGTTTCCCTGCAATCGCACCTATCCGCTCTCCTTCTAC
GGCCACAAGATCGTGGGCAACCAACTGCACACGCAGATGCTGGCCGGTCT
GCGAGGTCTGAGTCCTCTGAACTCGCCGATGGGCAGCAATGGTGCAGTGG
GAGCAGGTATGAACGCTACCTTTCGCTTCGAACCGCAGCAGCAGCAGCAG
CAACAGCTCTCGCCGATGGCTGGCTCACCGGCCAGTCCGCACTGCTCGCC
GCCGCGGGCGCGTAGAGAGGTGCCTCCACCGCCGCGGCTGCCGTGCAAGA
AGCAACAGCGCTCCCAGAGCCTCACACCGGCCCAGGCCATGTTGGTCAGC
AACATCAACAAGCTTCAGGAGCAACAACTACAGATGCAGGAGCTCGAGAA
TGGCAATGGCAACGGAATAATGCGCTTCCAGACAATCGCCAGGTGCAATC
CGACCAGTGAGCAGCACCTGGAGAGCAAGTTCACAACCCACTCGCTGCCC
AGACCCAACACTTCGGCGGCGCACGCTCTGCGCCAGCAAGCGGTGGCCCG
AATCTCGAGCCTGGCGAGAAACTGCAGCCTGGACTCGCCGTCGGACTCAC
GGCCGCCCAGTCCGCCGCCCAAGCCACGCAAGGAACCCATGGCAGCGGTG
CTGGCATACCAGGCCAGTGGATCCGACTCGGGGAACGGGTCCGGTGATTC
GGCTCTAGGGGATGCATGTGAGGCGAGCGTACAGCGGGGTGTGATAATCA
AGAATCCCCGATTCATGACCACTTCGGTCTCGAACGGAACGCTGAAGAGC
TTCACGGAGTTCGACGTCCTGGCCGCTGAGGAAGAACTATTCACCATGGC
CATAGAAGAAGTTAAAACAGCAAGCAAGTTTGACTTTGAGAACTTTGTTA
CTTTGCTACTGCCATCTGTGGAGAACAAGCCCCTGGATGGCGATGCCCTC
AACACGTTCAAGATGATGCTTCTGGAGACGGGCCCAAAGCTGCTGGCGGA
GCACATCACTCGCATCGACATTGCCCTGTTTTTGGAGGAGCCGTCGAACG
AGGAGGACTACTATCTGAGCTGTTCGGGTCTTGAGCTGCTAACACTGCCC
CATGGAAAGGTCTTTAGGGAGGACATAATAGAGCGGACGCAGTGCATCAA
GCTGATGGTCGCTGTGACCATACTCACCTGTCAAACGGATCTGGACCGAG
CCCAACTGCTCAGTAAATGGATTCAGATCGCAGTGGAAACTAAGACGGCT
CTCGGCAATCTGTTTGGATTCTGCGCCATCATGTTGGGCCTGTGCATGCA
ACAGATCCAAAAGCTCGACCAGGCCTGGCACATCCTGAGGCAACAGTACA
CGGACAGCGCCTTCACCTTCGAGGCCAAGTTGCGACCCACGTTGAGCATC
ATGAACGAGGCCTCCAATCCACAGGCTCCAAACACAACCGTTCCCCATGT
TCTGCTGTATGCACTACTGATCGATCGACCCGTTATGGACATCATAAACC
ACTCCAACATTGACGATCGCCCAGCTCTGTACCACACCTGTATTGCTCCT
TGGGAGTCGAAAGCGGATGACTTTGGCATGACCATTAATTTCCAGCACCT
GGATGCATCGCGTGGCTTCCTGAAGAACTTGGAACTGTATCGAAAGAATG
CCAAGATCATCCTGGAGGATGCTAGTCCTCGGCTCGATGAGCTTCTAGCT
GATGCTTTTCGAACCGAGTTCCATGTCAAGTTCCTATGGGGCAGTTCCGG
AGCAACGGCCAAGGCCGAAGATCGGCACAACAAACTGGAAAAGGTGCTCA
CCCTGATGGCCGACAAGTTTTGCATGATGGCCGAGCAGTAAGCTGTGAAA
TAATATGGACTTAAGTTTCTGGCCGATATCAAATGAACTAACTTAAAGCG
AACCTATGCCAGGACCTCCTATCTACTATCCACAATGTCTCCAGACCCTC
CGCATCTTTAAATTTCGTGCTGTCTCTACCTCAGCCTGAGTATACATATA
TCATTTCAGCAGAAACACAAAAGCACTTTATGTTACAGTTCAAATACCGT
TTAATCCTTAGTTAAGTTAAATTTAGTATTGTACGCGTATGCAAAACGAA
CTAGTTATCATATTTTTATGGAAAAACTCTTTAAGAGCCACCTCACTCTG
ATGTACTACCAAAGTCTTGTATTTACTTACCAATCCCATTATTTATTCTA
TGCAATAACTTACTCGACTATAGAAGAGACAATATACATTAATCAAAAAA
AAAAAAAAAAAAAAAAA

LD41184.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RB 3305 CG9098-RB 223..3189 1..2967 14820 99.9 Plus
CG9098-RA 3541 CG9098-RA 672..3423 216..2967 13745 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6008291..6009293 1574..572 5000 99.9 Minus
chr2L 23010047 chr2L 6006556..6007089 2944..2411 2670 100 Minus
chr2L 23010047 chr2L 6007806..6008240 2004..1570 2175 100 Minus
chr2L 23010047 chr2L 6007147..6007556 2411..2002 2050 100 Minus
chr2L 23010047 chr2L 6009360..6009724 577..213 1810 99.7 Minus
chr2L 23010047 chr2L 6010016..6010230 215..1 1075 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6009240..6010242 1574..572 5000 99.9 Minus
2L 23513712 2L 6007482..6008038 2967..2411 2770 99.8 Minus
2L 23513712 2L 6008755..6009189 2004..1570 2175 100 Minus
2L 23513712 2L 6008096..6008505 2411..2002 2050 100 Minus
2L 23513712 2L 6010309..6010673 577..213 1810 99.7 Minus
2L 23513712 2L 6010965..6011179 215..1 1075 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6009240..6010242 1574..572 5000 99.9 Minus
2L 23513712 2L 6007482..6008038 2967..2411 2770 99.8 Minus
2L 23513712 2L 6008755..6009189 2004..1570 2175 100 Minus
2L 23513712 2L 6008096..6008505 2411..2002 2050 100 Minus
2L 23513712 2L 6010309..6010673 577..213 1810 99.7 Minus
2L 23513712 2L 6010965..6011179 215..1 1075 100 Minus
Blast to na_te.dros performed 2019-03-16 02:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2858..2889 389..420 124 87.5 Plus

LD41184.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:22:04 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6006556..6007088 2412..2944 100 <- Minus
chr2L 6007147..6007553 2005..2411 100 <- Minus
chr2L 6007806..6008240 1570..2004 100 <- Minus
chr2L 6008296..6009291 574..1569 97 <- Minus
chr2L 6009364..6009721 216..573 100 <- Minus
chr2L 6010016..6010230 1..215 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:33 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 507..2835 213..2541 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:42 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 507..2835 213..2541 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:35 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 507..2835 213..2541 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:09 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 507..2835 213..2541 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:11 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 507..2835 213..2541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:13 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RB 25..2968 1..2944 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:42 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RB 25..2968 1..2944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:35 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RB 55..2998 1..2944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:09 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RB 25..2968 1..2944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:11 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RB 55..2998 1..2944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:04 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6007505..6008037 2412..2944 100 <- Minus
2L 6008096..6008502 2005..2411 100 <- Minus
2L 6008755..6009189 1570..2004 100 <- Minus
2L 6009245..6010240 574..1569 100 <- Minus
2L 6010313..6010670 216..573 100 <- Minus
2L 6010965..6011179 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:04 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6007505..6008037 2412..2944 100 <- Minus
2L 6008096..6008502 2005..2411 100 <- Minus
2L 6008755..6009189 1570..2004 100 <- Minus
2L 6009245..6010240 574..1569 100 <- Minus
2L 6010313..6010670 216..573 100 <- Minus
2L 6010965..6011179 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:04 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6007505..6008037 2412..2944 100 <- Minus
2L 6008096..6008502 2005..2411 100 <- Minus
2L 6008755..6009189 1570..2004 100 <- Minus
2L 6009245..6010240 574..1569 100 <- Minus
2L 6010313..6010670 216..573 100 <- Minus
2L 6010965..6011179 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:35 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6007505..6008037 2412..2944 100 <- Minus
arm_2L 6008096..6008502 2005..2411 100 <- Minus
arm_2L 6008755..6009189 1570..2004 100 <- Minus
arm_2L 6009245..6010240 574..1569 100 <- Minus
arm_2L 6010313..6010670 216..573 100 <- Minus
arm_2L 6010965..6011179 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:13 Download gff for LD41184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6007505..6008037 2412..2944 100 <- Minus
2L 6008096..6008502 2005..2411 100 <- Minus
2L 6008755..6009189 1570..2004 100 <- Minus
2L 6009245..6010240 574..1569 100 <- Minus
2L 6010313..6010670 216..573 100 <- Minus
2L 6010965..6011179 1..215 100   Minus

LD41184.pep Sequence

Translation from 279 to 2540

> LD41184.pep
MEGYGSSNATTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWY
HGALPRQRAEEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLV
LQPETVYERVQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNR
TYPLSFYGHKIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRF
EPQQQQQQQLSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTP
AQAMLVSNINKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESK
FTTHSLPRPNTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPR
KEPMAAVLAYQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSV
SNGTLKSFTEFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENK
PLDGDALNTFKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSG
LELLTLPHGKVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQI
AVETKTALGNLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAK
LRPTLSIMNEASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPAL
YHTCIAPWESKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASP
RLDELLADAFRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMM
AEQ*

LD41184.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14287-PA 938 GF14287-PA 194..934 1..752 3318 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24262-PA 944 GG24262-PA 192..944 1..753 3959 97.6 Plus
Dere\GG16379-PA 269 GG16379-PA 10..90 47..129 153 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10712-PA 944 GH10712-PA 194..940 1..748 3105 83 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PC 753 CG9098-PC 1..753 1..753 3901 100 Plus
CG9098-PB 753 CG9098-PB 1..753 1..753 3901 100 Plus
CG9098-PA 944 CG9098-PA 192..944 1..753 3901 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11294-PA 949 GI11294-PA 192..948 1..751 3154 84 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19090-PA 963 GL19090-PA 193..963 1..753 3211 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21540-PA 965 GA21540-PA 193..965 1..753 3209 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17975-PA 870 GM17975-PA 321..870 204..753 2919 98.7 Plus
Dsec\GM17975-PA 870 GM17975-PA 192..320 1..129 691 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22611-PA 944 GD22611-PA 192..944 1..753 4024 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12514-PA 952 GJ12514-PA 192..951 1..751 3204 83.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15403-PA 969 GK15403-PA 199..968 1..751 3099 84.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18960-PA 943 GE18960-PA 192..943 1..753 3991 98.3 Plus

LD41184.hyp Sequence

Translation from 279 to 2540

> LD41184.hyp
MEGYGSSNATTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWY
HGALPRQRAEEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLV
LQPETVYERVQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNR
TYPLSFYGHKIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRF
EPQQQQQQQLSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTP
AQAMLVSNINKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESK
FTTHSLPRPNTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPR
KEPMAAVLAYQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSV
SNGTLKSFTEFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENK
PLDGDALNTFKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSG
LELLTLPHGKVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQI
AVETKTALGNLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAK
LRPTLSIMNEASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPAL
YHTCIAPWESKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASP
RLDELLADAFRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMM
AEQ*

LD41184.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PC 753 CG9098-PC 1..753 1..753 3901 100 Plus
CG9098-PB 753 CG9098-PB 1..753 1..753 3901 100 Plus
CG9098-PA 944 CG9098-PA 192..944 1..753 3901 100 Plus