Clone LD41209 Report

Search the DGRC for LD41209

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:412
Well:9
Vector:pOT2
Associated Gene/TranscriptPrp31-RA
Protein status:LD41209.pep: gold
Preliminary Size:1974
Sequenced Size:1898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6876 2001-01-01 Release 2 assignment
CG6876 2001-07-04 Blastp of sequenced clone
CG6876 2003-01-01 Sim4 clustering to Release 3
CG6876 2008-04-29 Release 5.5 accounting
CG6876 2008-08-15 Release 5.9 accounting
CG6876 2008-12-18 5.12 accounting

Clone Sequence Records

LD41209.complete Sequence

1898 bp (1898 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051928

> LD41209.complete
TCTAAGGCGGCTGAGCAACGGTCACTTCAATTCCAAAACAAACTTAATTT
CACGAGATCGCAAAATAAACTTTTGAAATAAGCCAAAATGTCGCTAGCCG
ATGAGCTTTTAGCCGATCTCGAGGAAGACAATGACAATGAGCTGGAGGAG
GAGGATTCGGAGATGGCCAGTGCAGAGGACGAGAGCTTGCTGGCGGAGAA
GCTGGCTAAGCCGGCTCCCAATCTGATGGACGTGGATGTAACCGTGCAGT
CGGTGCGGGAACTGTGCAAGCTGCGCGACTCTGAGCGCCTGAAGAACACG
CTGCAGCAGATCGAGCACTATGCCAGTCGCCAGAGAACTGCAGCCGAAAT
GCTGGGATCCGTAGAATCCGATCCAGAGTACTGCCTCATCGTGGACGCTA
ATGCCATAGCTGTGGACATTGACAACGAGATCTCCATTGTGCACAAGTTC
ACCAAGGAGAAGTATCAGAAGCGATTCCCCGAATTGGACTCCCTGATCGT
GGGTGAAATCGAGTACTTGCTGGCGGTCAAGGAGCTGGGCAACGACCTGG
ACCAGGTCAAAAATAACGAGAAGCTGCAGGCTATTCTCACGCAGGCCACC
ATTATGATTGTGTCAGTCACGGCGTCCACCACACAGGGAACCATGCTGAC
ACCGGCGGAGAAGGCAAAGATCGACGAGGCCTGCGAAATGGCCATCGAAC
TGAATAACTTCAAGTCCAAGATCTACGAGTATGTGGAAAGTCGCATGACC
TTCATAGCCCCAAATCTTTCCATGATTGTTGGAGCATCGACGGCGGCTAA
ACTCTTGGGCATTGCTGGTGGCCTTTCCAAATTATCCAAAATGCCGGCCT
GCAATGTTCAGGTGTTGGGTGCACAAAAGAAAACCCTCTCGGGCTTCTCA
CAAACGCAGATGTTGCCGCACACTGGCTATGTGTACTACTCACAGATTGT
GCAGGATACTGCGCCAGATCTGCGACGCAAGGCAGCTCGCTTGGTGGCCG
CCAAGTCCGTGCTGGCTGCTCGTGTTGATGCCTGTCATGAGAGTGTCCAC
GGGGAGATTGGACTGCGCTTCAAGGAGGATGTGGAAAAGAAGCTGGACAA
GCTGCAGGAGCCGCCGCCGGTGAAGTTCATAAAGCCGCTGCCCAAACCCA
TCGAGGGAAGCAAGAAGAAGCGAGGAGGCAAACGCGTGCGCAAGATGAAG
GAACGATATGCGCTGACAGAGTTCCGCAAGCAAGCGAACCGCATGAATTT
CGGAGACATCGAAGAGGATGCCTACCAAGGAGATCTGGGCTATTCACGCG
GCACCATCGGCAAAACTGGCACCGGCCGCATCCGATTGCCCCAGGTGGAT
GAGAAGACCAAGGTGCGCATTAGCAAAACGTTGCACAAGAATCTGCAGAA
ACAGCAGGTGTACGGCGGCAACACCACGGTCAAACGCCAAATCTCCGGAA
CGGCATCCAGTGTGGCCTTTACGCCACTGCAAGGTCTAGAGATTGTGAAT
CCGCAGGCGGCGGAGCGTTCGCAGACGGAGGCCAATGCCAAATACTTTTC
AAACACATCCGGATTCATGTCAGTGGGACAGCGGACCACTTAAGAGAACA
GCTCTATCCTTATTTTCTATAAAATTAAGCACTTTTATTTGGAGATTTGT
CGAATGTATATTGAGTTAGGCGTAGTAAAGCTGCATAAGAGATTCGAATT
GTTGTTAGCTGAGCTTGCCGACTTCCAGTTTCCGTTGAATGGCCTCCCAC
GAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGTGAACACGCCTCC
GATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATGAGCTGGGAATAC
ACAACACAACCAATAAAACTTGTAAAATTAAAAAAAAAAAAAAAAAAA

LD41209.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6876-RA 2024 CG6876-RA 126..2006 1..1881 9405 100 Plus
CG7011-RA 1455 CG7011-RA 1222..1455 1843..1610 1170 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15149931..15150550 638..1257 3100 100 Plus
chr3L 24539361 chr3L 15150610..15151231 1258..1879 3095 99.8 Plus
chr3L 24539361 chr3L 15149418..15149869 187..638 2245 99.8 Plus
chr3L 24539361 chr3L 15149176..15149361 1..186 930 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15160517..15161140 1258..1881 3120 100 Plus
3L 28110227 3L 15159838..15160457 638..1257 3100 100 Plus
3L 28110227 3L 15159325..15159776 187..638 2260 100 Plus
3L 28110227 3L 15159083..15159268 1..186 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15153617..15154240 1258..1881 3120 100 Plus
3L 28103327 3L 15152938..15153557 638..1257 3100 100 Plus
3L 28103327 3L 15152425..15152876 187..638 2260 100 Plus
3L 28103327 3L 15152183..15152368 1..186 930 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:29:51 has no hits.

LD41209.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:30 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15149176..15149361 1..186 100 -> Plus
chr3L 15149418..15149869 187..638 99 -> Plus
chr3L 15149932..15150550 639..1257 100 -> Plus
chr3L 15150610..15151231 1258..1879 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:35 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:46 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:36 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:13 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:20 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:09 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:46 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:36 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1862 18..1879 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:13 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:20 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 1..1862 18..1879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:30 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15159083..15159268 1..186 100 -> Plus
3L 15159325..15159776 187..638 100 -> Plus
3L 15159839..15160457 639..1257 100 -> Plus
3L 15160517..15161138 1258..1879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:30 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15159083..15159268 1..186 100 -> Plus
3L 15159325..15159776 187..638 100 -> Plus
3L 15159839..15160457 639..1257 100 -> Plus
3L 15160517..15161138 1258..1879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:30 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15159083..15159268 1..186 100 -> Plus
3L 15159325..15159776 187..638 100 -> Plus
3L 15159839..15160457 639..1257 100 -> Plus
3L 15160517..15161138 1258..1879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:36 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15152183..15152368 1..186 100 -> Plus
arm_3L 15152425..15152876 187..638 100 -> Plus
arm_3L 15152939..15153557 639..1257 100 -> Plus
arm_3L 15153617..15154238 1258..1879 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:17 Download gff for LD41209.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15152183..15152368 1..186 100 -> Plus
3L 15152425..15152876 187..638 100 -> Plus
3L 15152939..15153557 639..1257 100 -> Plus
3L 15153617..15154238 1258..1879 100   Plus

LD41209.pep Sequence

Translation from 87 to 1592

> LD41209.pep
MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD
VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL
IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL
GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE
MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS
KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA
RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP
LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL
GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR
QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT
T*

LD41209.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23690-PA 501 GF23690-PA 1..501 1..501 2622 97.6 Plus
Dana\GF14470-PA 512 GF14470-PA 162..401 100..341 324 32.2 Plus
Dana\GF16568-PA 495 GF16568-PA 168..427 100..356 235 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15883-PA 501 GG15883-PA 1..501 1..501 2656 99.4 Plus
Dere\GG23571-PA 508 GG23571-PA 162..401 100..341 318 31 Plus
Dere\GG12519-PA 497 GG12519-PA 168..429 100..358 239 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14529-PA 503 GH14529-PA 1..503 1..501 2360 91.7 Plus
Dgri\GH13163-PA 512 GH13163-PA 162..401 100..341 321 31.4 Plus
Dgri\GH17505-PA 498 GH17505-PA 168..429 100..358 232 25.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-PA 501 CG6876-PA 1..501 1..501 2508 100 Plus
nop5-PA 511 CG10206-PA 162..401 100..341 323 31 Plus
Nop56-PA 496 CG13849-PA 168..453 100..378 262 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13100-PA 503 GI13100-PA 1..503 1..501 2405 91.9 Plus
Dmoj\GI17742-PA 520 GI17742-PA 162..401 100..341 316 31.4 Plus
Dmoj\GI10373-PA 500 GI10373-PA 169..407 100..336 241 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24782-PA 501 GL24782-PA 1..501 1..501 2429 94.2 Plus
Dper\GL25602-PA 517 GL25602-PA 162..401 100..341 313 30.6 Plus
Dper\GL23339-PA 500 GL23339-PA 168..434 100..363 237 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19924-PA 501 GA19924-PA 1..501 1..501 2429 94.2 Plus
Dpse\GA28044-PA 517 GA28044-PA 162..401 100..341 313 30.6 Plus
Dpse\Nop56-PA 503 GA12569-PA 168..434 100..363 236 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25514-PA 501 GM25514-PA 1..501 1..501 2654 99.4 Plus
Dsec\GM13736-PA 509 GM13736-PA 162..401 100..341 318 31 Plus
Dsec\GM23654-PA 496 GM23654-PA 168..429 100..358 239 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14529-PA 501 GD14529-PA 1..501 1..501 2652 99.4 Plus
Dsim\GD22532-PA 510 GD22532-PA 162..401 100..341 318 31 Plus
Dsim\GD18461-PA 496 GD18461-PA 168..429 100..358 239 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13847-PA 503 GJ13847-PA 1..503 1..501 2433 92.7 Plus
Dvir\GJ17567-PA 518 GJ17567-PA 162..401 100..341 314 31 Plus
Dvir\GJ22835-PA 498 GJ22835-PA 168..432 100..361 246 25.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20402-PA 504 GK20402-PA 1..504 1..501 2330 91.3 Plus
Dwil\GK24250-PA 516 GK24250-PA 162..401 100..341 318 31 Plus
Dwil\GK14188-PA 512 GK14188-PA 178..439 100..358 234 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22227-PA 501 GE22227-PA 1..501 1..501 2656 99.4 Plus
Dyak\GE18393-PA 509 GE18393-PA 162..401 100..341 318 31 Plus
Dyak\GE24041-PA 497 GE24041-PA 168..429 100..358 237 25.3 Plus

LD41209.hyp Sequence

Translation from 87 to 1592

> LD41209.hyp
MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD
VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL
IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL
GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE
MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS
KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA
RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP
LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL
GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR
QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT
T*

LD41209.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-PA 501 CG6876-PA 1..501 1..501 2508 100 Plus
nop5-PA 511 CG10206-PA 162..401 100..341 323 31 Plus
Nop56-PA 496 CG13849-PA 168..453 100..378 262 24.3 Plus