BDGP Sequence Production Resources |
Search the DGRC for LD41209
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 412 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Prp31-RA |
Protein status: | LD41209.pep: gold |
Preliminary Size: | 1974 |
Sequenced Size: | 1898 |
Gene | Date | Evidence |
---|---|---|
CG6876 | 2001-01-01 | Release 2 assignment |
CG6876 | 2001-07-04 | Blastp of sequenced clone |
CG6876 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6876 | 2008-04-29 | Release 5.5 accounting |
CG6876 | 2008-08-15 | Release 5.9 accounting |
CG6876 | 2008-12-18 | 5.12 accounting |
1898 bp (1898 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051928
> LD41209.complete TCTAAGGCGGCTGAGCAACGGTCACTTCAATTCCAAAACAAACTTAATTT CACGAGATCGCAAAATAAACTTTTGAAATAAGCCAAAATGTCGCTAGCCG ATGAGCTTTTAGCCGATCTCGAGGAAGACAATGACAATGAGCTGGAGGAG GAGGATTCGGAGATGGCCAGTGCAGAGGACGAGAGCTTGCTGGCGGAGAA GCTGGCTAAGCCGGCTCCCAATCTGATGGACGTGGATGTAACCGTGCAGT CGGTGCGGGAACTGTGCAAGCTGCGCGACTCTGAGCGCCTGAAGAACACG CTGCAGCAGATCGAGCACTATGCCAGTCGCCAGAGAACTGCAGCCGAAAT GCTGGGATCCGTAGAATCCGATCCAGAGTACTGCCTCATCGTGGACGCTA ATGCCATAGCTGTGGACATTGACAACGAGATCTCCATTGTGCACAAGTTC ACCAAGGAGAAGTATCAGAAGCGATTCCCCGAATTGGACTCCCTGATCGT GGGTGAAATCGAGTACTTGCTGGCGGTCAAGGAGCTGGGCAACGACCTGG ACCAGGTCAAAAATAACGAGAAGCTGCAGGCTATTCTCACGCAGGCCACC ATTATGATTGTGTCAGTCACGGCGTCCACCACACAGGGAACCATGCTGAC ACCGGCGGAGAAGGCAAAGATCGACGAGGCCTGCGAAATGGCCATCGAAC TGAATAACTTCAAGTCCAAGATCTACGAGTATGTGGAAAGTCGCATGACC TTCATAGCCCCAAATCTTTCCATGATTGTTGGAGCATCGACGGCGGCTAA ACTCTTGGGCATTGCTGGTGGCCTTTCCAAATTATCCAAAATGCCGGCCT GCAATGTTCAGGTGTTGGGTGCACAAAAGAAAACCCTCTCGGGCTTCTCA CAAACGCAGATGTTGCCGCACACTGGCTATGTGTACTACTCACAGATTGT GCAGGATACTGCGCCAGATCTGCGACGCAAGGCAGCTCGCTTGGTGGCCG CCAAGTCCGTGCTGGCTGCTCGTGTTGATGCCTGTCATGAGAGTGTCCAC GGGGAGATTGGACTGCGCTTCAAGGAGGATGTGGAAAAGAAGCTGGACAA GCTGCAGGAGCCGCCGCCGGTGAAGTTCATAAAGCCGCTGCCCAAACCCA TCGAGGGAAGCAAGAAGAAGCGAGGAGGCAAACGCGTGCGCAAGATGAAG GAACGATATGCGCTGACAGAGTTCCGCAAGCAAGCGAACCGCATGAATTT CGGAGACATCGAAGAGGATGCCTACCAAGGAGATCTGGGCTATTCACGCG GCACCATCGGCAAAACTGGCACCGGCCGCATCCGATTGCCCCAGGTGGAT GAGAAGACCAAGGTGCGCATTAGCAAAACGTTGCACAAGAATCTGCAGAA ACAGCAGGTGTACGGCGGCAACACCACGGTCAAACGCCAAATCTCCGGAA CGGCATCCAGTGTGGCCTTTACGCCACTGCAAGGTCTAGAGATTGTGAAT CCGCAGGCGGCGGAGCGTTCGCAGACGGAGGCCAATGCCAAATACTTTTC AAACACATCCGGATTCATGTCAGTGGGACAGCGGACCACTTAAGAGAACA GCTCTATCCTTATTTTCTATAAAATTAAGCACTTTTATTTGGAGATTTGT CGAATGTATATTGAGTTAGGCGTAGTAAAGCTGCATAAGAGATTCGAATT GTTGTTAGCTGAGCTTGCCGACTTCCAGTTTCCGTTGAATGGCCTCCCAC GAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGTGAACACGCCTCC GATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATGAGCTGGGAATAC ACAACACAACCAATAAAACTTGTAAAATTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15149931..15150550 | 638..1257 | 3100 | 100 | Plus |
chr3L | 24539361 | chr3L | 15150610..15151231 | 1258..1879 | 3095 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 15149418..15149869 | 187..638 | 2245 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 15149176..15149361 | 1..186 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15160517..15161140 | 1258..1881 | 3120 | 100 | Plus |
3L | 28110227 | 3L | 15159838..15160457 | 638..1257 | 3100 | 100 | Plus |
3L | 28110227 | 3L | 15159325..15159776 | 187..638 | 2260 | 100 | Plus |
3L | 28110227 | 3L | 15159083..15159268 | 1..186 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15153617..15154240 | 1258..1881 | 3120 | 100 | Plus |
3L | 28103327 | 3L | 15152938..15153557 | 638..1257 | 3100 | 100 | Plus |
3L | 28103327 | 3L | 15152425..15152876 | 187..638 | 2260 | 100 | Plus |
3L | 28103327 | 3L | 15152183..15152368 | 1..186 | 930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15149176..15149361 | 1..186 | 100 | -> | Plus |
chr3L | 15149418..15149869 | 187..638 | 99 | -> | Plus |
chr3L | 15149932..15150550 | 639..1257 | 100 | -> | Plus |
chr3L | 15150610..15151231 | 1258..1879 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6876-RA | 1..1506 | 88..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1506 | 88..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1506 | 88..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6876-RA | 1..1506 | 88..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1506 | 88..1593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6876-RA | 1..1879 | 1..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1879 | 1..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1862 | 18..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6876-RA | 1..1879 | 1..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prp31-RA | 1..1862 | 18..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15159083..15159268 | 1..186 | 100 | -> | Plus |
3L | 15159325..15159776 | 187..638 | 100 | -> | Plus |
3L | 15159839..15160457 | 639..1257 | 100 | -> | Plus |
3L | 15160517..15161138 | 1258..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15159083..15159268 | 1..186 | 100 | -> | Plus |
3L | 15159325..15159776 | 187..638 | 100 | -> | Plus |
3L | 15159839..15160457 | 639..1257 | 100 | -> | Plus |
3L | 15160517..15161138 | 1258..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15159083..15159268 | 1..186 | 100 | -> | Plus |
3L | 15159325..15159776 | 187..638 | 100 | -> | Plus |
3L | 15159839..15160457 | 639..1257 | 100 | -> | Plus |
3L | 15160517..15161138 | 1258..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15152183..15152368 | 1..186 | 100 | -> | Plus |
arm_3L | 15152425..15152876 | 187..638 | 100 | -> | Plus |
arm_3L | 15152939..15153557 | 639..1257 | 100 | -> | Plus |
arm_3L | 15153617..15154238 | 1258..1879 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15152183..15152368 | 1..186 | 100 | -> | Plus |
3L | 15152425..15152876 | 187..638 | 100 | -> | Plus |
3L | 15152939..15153557 | 639..1257 | 100 | -> | Plus |
3L | 15153617..15154238 | 1258..1879 | 100 | Plus |
Translation from 87 to 1592
> LD41209.pep MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT T*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23690-PA | 501 | GF23690-PA | 1..501 | 1..501 | 2622 | 97.6 | Plus |
Dana\GF14470-PA | 512 | GF14470-PA | 162..401 | 100..341 | 324 | 32.2 | Plus |
Dana\GF16568-PA | 495 | GF16568-PA | 168..427 | 100..356 | 235 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15883-PA | 501 | GG15883-PA | 1..501 | 1..501 | 2656 | 99.4 | Plus |
Dere\GG23571-PA | 508 | GG23571-PA | 162..401 | 100..341 | 318 | 31 | Plus |
Dere\GG12519-PA | 497 | GG12519-PA | 168..429 | 100..358 | 239 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14529-PA | 503 | GH14529-PA | 1..503 | 1..501 | 2360 | 91.7 | Plus |
Dgri\GH13163-PA | 512 | GH13163-PA | 162..401 | 100..341 | 321 | 31.4 | Plus |
Dgri\GH17505-PA | 498 | GH17505-PA | 168..429 | 100..358 | 232 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prp31-PA | 501 | CG6876-PA | 1..501 | 1..501 | 2508 | 100 | Plus |
nop5-PA | 511 | CG10206-PA | 162..401 | 100..341 | 323 | 31 | Plus |
Nop56-PA | 496 | CG13849-PA | 168..453 | 100..378 | 262 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13100-PA | 503 | GI13100-PA | 1..503 | 1..501 | 2405 | 91.9 | Plus |
Dmoj\GI17742-PA | 520 | GI17742-PA | 162..401 | 100..341 | 316 | 31.4 | Plus |
Dmoj\GI10373-PA | 500 | GI10373-PA | 169..407 | 100..336 | 241 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24782-PA | 501 | GL24782-PA | 1..501 | 1..501 | 2429 | 94.2 | Plus |
Dper\GL25602-PA | 517 | GL25602-PA | 162..401 | 100..341 | 313 | 30.6 | Plus |
Dper\GL23339-PA | 500 | GL23339-PA | 168..434 | 100..363 | 237 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19924-PA | 501 | GA19924-PA | 1..501 | 1..501 | 2429 | 94.2 | Plus |
Dpse\GA28044-PA | 517 | GA28044-PA | 162..401 | 100..341 | 313 | 30.6 | Plus |
Dpse\Nop56-PA | 503 | GA12569-PA | 168..434 | 100..363 | 236 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25514-PA | 501 | GM25514-PA | 1..501 | 1..501 | 2654 | 99.4 | Plus |
Dsec\GM13736-PA | 509 | GM13736-PA | 162..401 | 100..341 | 318 | 31 | Plus |
Dsec\GM23654-PA | 496 | GM23654-PA | 168..429 | 100..358 | 239 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14529-PA | 501 | GD14529-PA | 1..501 | 1..501 | 2652 | 99.4 | Plus |
Dsim\GD22532-PA | 510 | GD22532-PA | 162..401 | 100..341 | 318 | 31 | Plus |
Dsim\GD18461-PA | 496 | GD18461-PA | 168..429 | 100..358 | 239 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13847-PA | 503 | GJ13847-PA | 1..503 | 1..501 | 2433 | 92.7 | Plus |
Dvir\GJ17567-PA | 518 | GJ17567-PA | 162..401 | 100..341 | 314 | 31 | Plus |
Dvir\GJ22835-PA | 498 | GJ22835-PA | 168..432 | 100..361 | 246 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20402-PA | 504 | GK20402-PA | 1..504 | 1..501 | 2330 | 91.3 | Plus |
Dwil\GK24250-PA | 516 | GK24250-PA | 162..401 | 100..341 | 318 | 31 | Plus |
Dwil\GK14188-PA | 512 | GK14188-PA | 178..439 | 100..358 | 234 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22227-PA | 501 | GE22227-PA | 1..501 | 1..501 | 2656 | 99.4 | Plus |
Dyak\GE18393-PA | 509 | GE18393-PA | 162..401 | 100..341 | 318 | 31 | Plus |
Dyak\GE24041-PA | 497 | GE24041-PA | 168..429 | 100..358 | 237 | 25.3 | Plus |
Translation from 87 to 1592
> LD41209.hyp MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT T*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prp31-PA | 501 | CG6876-PA | 1..501 | 1..501 | 2508 | 100 | Plus |
nop5-PA | 511 | CG10206-PA | 162..401 | 100..341 | 323 | 31 | Plus |
Nop56-PA | 496 | CG13849-PA | 168..453 | 100..378 | 262 | 24.3 | Plus |