BDGP Sequence Production Resources |
Search the DGRC for LD41224
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 412 |
Well: | 24 |
Vector: | pOT2 |
Associated Gene/Transcript | Cen-RA |
Protein status: | LD41224.pep: gold |
Preliminary Size: | 2904 |
Sequenced Size: | 2848 |
Gene | Date | Evidence |
---|---|---|
CG1962 | 2001-07-04 | Blastp of sequenced clone |
CG1962 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1962 | 2008-04-29 | Release 5.5 accounting |
CG1962 | 2008-08-15 | Release 5.9 accounting |
CG1962 | 2008-12-18 | 5.12 accounting |
2848 bp (2848 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051930
> LD41224.complete TTCCGGTTCTGCTAGGAAGTTCATTTCGGTTCTTTGTCTGCAGGTCGATT GTGTATAATAAAAAGCATTAATTAACTATTCGTACATGCAGTTGCGCCCT AGTACGTAGGGCTTTTTCTGCACTCGCTGCAATACCATACTTTTTGTTTT TGGGGATGAAACAGTAAAAAAGTTACTGTTGTAGCAGTTTTCCACCATTG AGAGGACATTTGCCAAAGTTCGCATCAAGCCCAAGCTTAGAAAGGTCCAA GTCCAAGATGGAGGAATCCAATCACGGTTCGGCTGGCTGTGAAAACGTAT CGCAGTTCATGCTCGATGACCTACAATTGGCAGCAGAGCTGGGAAAAACG CTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGAGTACAAGAT TAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCAAGCACATTA ATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTACGAGCAGCTG GAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCTAAATCTGGA GAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCAACACGGAAG TCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGCGATGCTCGG CAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCAGCAGGAACG CTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTCACAGCATTC AATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTAGATGTTATG GCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAGTAATGCCAC CATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGGAATTGGTAA AGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTGGCCGAACAG CAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAATCCAAGACAA CCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATGAGGGAACAA TGTCGATGCACGAGGAGTTCAGCCTCCTGGACGACGTGAGACAAGGCCAA ATGTGTAGTCGCTGCCTGAGGGATATTAACGAAAGCAACACCAATATGGA TGATCAATCCTCCATTGCCCCAACCGAAGAAATCTACGAAGATGACGATC GCAGCATACTAAGCGAAAGCACCTCGAAATGCGATAATAGTGGTGCGGAT TATAAGGAACGCTTCCGGATTCCCGAGGACCTCAATCCCAACTCTAGCGA CAAACCAAATCCTTATCGGGACCTAGTCGAGAAATATGAAGCTCTGGTGG AGGTGAAGAGAACCTCGAATGCGGTCAAGAGCAACTTCACCAGCAATCCA GATGGGAAGACCATGACCGAGTCCAGTCAAGGCAAAAAATCAGAAACAAT TGTTAACAGCTCAAAGGAATCTGACCTTATGTTGGATTCAACACGTAAGC GCACTCCAACCGAGTTTTCGGAATCAGAAACTACATCGTCGGGATTCTCG GATGAAACTAGCAACAAGTCTACGCAAACTGACGAGCGACCGAGTTACTT CCTTTGCTCAATAAGTAATGGAAACGATTGTAAATTCAGTATTTATGACG ACGTCAGCCCCATTGAATCTCATTTCCGTAATCGCCCGGAGTACAGGGAA CTCTTCAAGGAGATATTTGGAGTGCTCAAGAAGGCAGCTGATAATAACGA AGAAGACAAGCTTCCGTCCCTGCATGACGACGCACAGATTACAGAAAAAT TACCCTTGGTGGCGGCCAAAGTACCCCCGGTAACACCCGAGAGGGAGGAA TCTCCAGATGACTTCATTGACGACACACAGAGCGTCGTATCCTCAGTTAT ATCCAACCAGTCCATTGCAATGTCCGAGTGCGTTACCAAACTGGAGCGGA AGACAGCCAAAAAACACATCTTTGATGTCCGAAACCAACAAAACCAATCG TCCCTAACGCAATCCACTTTGTTAAACAGCTCCTCGAAGGAAACAACTGT CGGCGAACCGAATTATAAACCCATAAGGGAGAATGGCCAGATACTTACTC CACTCAAGCGCGAACCACTCGAATATCTAACCGTAGGTGTCGGAATCAAG AAGAAGAACCGACGAAAGCACCGAAACCAAAGCTCATCTGGAGATCGCAT CGAATTGTTTAACTCCCGGGAATTTACTCCCAGGAACAGTCCTCTGGCCA TGAACAACCGTGGTGGTGGACAAGGGAGCTCAAAGATGTGTACGGATACA TTGAATGCTGAATTCGGACGCAGTAACCGCAGACGGACAACTCCATCCTC AAGCAACTGGAATGGCTCTCCCATGGTGATCTATAACAAGAATATGAATA CTCCCCAAACTTCTCGGGGCCGAGTAATAGAGCTCAATGGCGTCGAGTTT TATCATAACACGGTATCGCAAGACTTACATAAACTTAAAAAGTTAGACTT ATCCTACGCCGAAGTTTTGCGCCGGGCCGATGCCGGCGAACATGGACCCA CAAGATCACATTCCCAGCGACAGCAACACAACGGAGCCAACATTCGCAAG AGTCATCATCATCAGTTTCGTCAAAAGTAAACTTGTTTAGAGAATGTAAA TAAGCAATTAAACAGTGCATTCTAGCCATAGGGCATTCTACCATTTTTAA ATTGTGTGTGCCATGCAGTCTAGTCCGCTTTTTCATGTATAGACAGTTAA ATAACAATAACTAAATAACTATAATCGGAAATTTAATTTTATTTCAGCAT GATAAAATAAATAATTTAATGACCTACAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1962-RA | 3087 | CG1962-RA | 162..2993 | 1..2832 | 14160 | 100 | Plus |
CG1962.a | 2935 | CG1962.a | 162..2806 | 1..2645 | 13225 | 100 | Plus |
CG1962-RB | 2698 | CG1962-RB | 81..2698 | 212..2829 | 13075 | 99.9 | Plus |
CG1962.a | 2935 | CG1962.a | 2807..2841 | 2798..2832 | 175 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6933..7134 | 2609..2815 | 140 | 56.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20677391..20680003 | 217..2829 | 99 | <- | Minus |
chr2L | 20680089..20680304 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RB | 1..2373 | 258..2630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RB | 1..2373 | 258..2630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cen-RA | 1..2373 | 258..2630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RB | 1..2373 | 258..2630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cen-RA | 1..2373 | 258..2630 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RA | 11..2839 | 1..2829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RA | 11..2839 | 1..2829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cen-RA | 13..2841 | 1..2829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1962-RA | 11..2839 | 1..2829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cen-RA | 13..2841 | 1..2829 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20681619..20681834 | 1..216 | 100 | Minus | |
2L | 20678921..20681533 | 217..2829 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20681619..20681834 | 1..216 | 100 | Minus | |
2L | 20678921..20681533 | 217..2829 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20681619..20681834 | 1..216 | 100 | Minus | |
2L | 20678921..20681533 | 217..2829 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20678921..20681533 | 217..2829 | 100 | <- | Minus |
arm_2L | 20681619..20681834 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20678921..20681533 | 217..2829 | 100 | <- | Minus |
2L | 20681619..20681834 | 1..216 | 100 | Minus |
Translation from 257 to 2629
> LD41224.pep MEESNHGSAGCENVSQFMLDDLQLAAELGKTLLERNKELETFIKEYKIKG DEQELEILHLRKHINAMTEVNDSRLKVYEQLEVGIQDLERANQRLNLEKN RDKKQIKTLTTNTEVLEARCEELSQLLSDARQSLSTERRKVDQYQQERYR MQHSTEGSVSSHSIQSLCKEQSVEFSKLDVMAIANSTGLEDISFSNATMC ERTAVKGEDNEELVKLLSEMEVLKRDFLAEQQRCTELEEQLVTIIQDNQG LQTRLLENSANEGTMSMHEEFSLLDDVRQGQMCSRCLRDINESNTNMDDQ SSIAPTEEIYEDDDRSILSESTSKCDNSGADYKERFRIPEDLNPNSSDKP NPYRDLVEKYEALVEVKRTSNAVKSNFTSNPDGKTMTESSQGKKSETIVN SSKESDLMLDSTRKRTPTEFSESETTSSGFSDETSNKSTQTDERPSYFLC SISNGNDCKFSIYDDVSPIESHFRNRPEYRELFKEIFGVLKKAADNNEED KLPSLHDDAQITEKLPLVAAKVPPVTPEREESPDDFIDDTQSVVSSVISN QSIAMSECVTKLERKTAKKHIFDVRNQQNQSSLTQSTLLNSSSKETTVGE PNYKPIRENGQILTPLKREPLEYLTVGVGIKKKNRRKHRNQSSSGDRIEL FNSREFTPRNSPLAMNNRGGGQGSSKMCTDTLNAEFGRSNRRRTTPSSSN WNGSPMVIYNKNMNTPQTSRGRVIELNGVEFYHNTVSQDLHKLKKLDLSY AEVLRRADAGEHGPTRSHSQRQQHNGANIRKSHHHQFRQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21558-PA | 789 | GG21558-PA | 1..789 | 1..790 | 4106 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23524-PA | 808 | GH23524-PA | 6..800 | 1..778 | 1874 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cen-PB | 790 | CG1962-PB | 1..790 | 1..790 | 4044 | 100 | Plus |
Cen-PA | 790 | CG1962-PA | 1..790 | 1..790 | 4044 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23548-PA | 813 | GI23548-PA | 18..805 | 15..778 | 1887 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18354-PA | 465 | GL18354-PA | 17..464 | 344..786 | 1209 | 55.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15155-PA | 457 | GA15155-PA | 1..456 | 334..786 | 1233 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23315-PA | 790 | GM23315-PA | 1..790 | 1..790 | 4186 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21689-PA | 790 | GD21689-PA | 1..790 | 1..790 | 4202 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23509-PA | 814 | GJ23509-PA | 1..806 | 1..778 | 1907 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16349-PA | 857 | GK16349-PA | 14..857 | 13..786 | 2062 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13551-PA | 789 | GE13551-PA | 1..789 | 1..790 | 4095 | 96.7 | Plus |
Translation from 257 to 2629
> LD41224.hyp MEESNHGSAGCENVSQFMLDDLQLAAELGKTLLERNKELETFIKEYKIKG DEQELEILHLRKHINAMTEVNDSRLKVYEQLEVGIQDLERANQRLNLEKN RDKKQIKTLTTNTEVLEARCEELSQLLSDARQSLSTERRKVDQYQQERYR MQHSTEGSVSSHSIQSLCKEQSVEFSKLDVMAIANSTGLEDISFSNATMC ERTAVKGEDNEELVKLLSEMEVLKRDFLAEQQRCTELEEQLVTIIQDNQG LQTRLLENSANEGTMSMHEEFSLLDDVRQGQMCSRCLRDINESNTNMDDQ SSIAPTEEIYEDDDRSILSESTSKCDNSGADYKERFRIPEDLNPNSSDKP NPYRDLVEKYEALVEVKRTSNAVKSNFTSNPDGKTMTESSQGKKSETIVN SSKESDLMLDSTRKRTPTEFSESETTSSGFSDETSNKSTQTDERPSYFLC SISNGNDCKFSIYDDVSPIESHFRNRPEYRELFKEIFGVLKKAADNNEED KLPSLHDDAQITEKLPLVAAKVPPVTPEREESPDDFIDDTQSVVSSVISN QSIAMSECVTKLERKTAKKHIFDVRNQQNQSSLTQSTLLNSSSKETTVGE PNYKPIRENGQILTPLKREPLEYLTVGVGIKKKNRRKHRNQSSSGDRIEL FNSREFTPRNSPLAMNNRGGGQGSSKMCTDTLNAEFGRSNRRRTTPSSSN WNGSPMVIYNKNMNTPQTSRGRVIELNGVEFYHNTVSQDLHKLKKLDLSY AEVLRRADAGEHGPTRSHSQRQQHNGANIRKSHHHQFRQK*