Clone LD41224 Report

Search the DGRC for LD41224

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:412
Well:24
Vector:pOT2
Associated Gene/TranscriptCen-RA
Protein status:LD41224.pep: gold
Preliminary Size:2904
Sequenced Size:2848

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1962 2001-07-04 Blastp of sequenced clone
CG1962 2003-01-01 Sim4 clustering to Release 3
CG1962 2008-04-29 Release 5.5 accounting
CG1962 2008-08-15 Release 5.9 accounting
CG1962 2008-12-18 5.12 accounting

Clone Sequence Records

LD41224.complete Sequence

2848 bp (2848 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051930

> LD41224.complete
TTCCGGTTCTGCTAGGAAGTTCATTTCGGTTCTTTGTCTGCAGGTCGATT
GTGTATAATAAAAAGCATTAATTAACTATTCGTACATGCAGTTGCGCCCT
AGTACGTAGGGCTTTTTCTGCACTCGCTGCAATACCATACTTTTTGTTTT
TGGGGATGAAACAGTAAAAAAGTTACTGTTGTAGCAGTTTTCCACCATTG
AGAGGACATTTGCCAAAGTTCGCATCAAGCCCAAGCTTAGAAAGGTCCAA
GTCCAAGATGGAGGAATCCAATCACGGTTCGGCTGGCTGTGAAAACGTAT
CGCAGTTCATGCTCGATGACCTACAATTGGCAGCAGAGCTGGGAAAAACG
CTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGAGTACAAGAT
TAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCAAGCACATTA
ATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTACGAGCAGCTG
GAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCTAAATCTGGA
GAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCAACACGGAAG
TCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGCGATGCTCGG
CAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCAGCAGGAACG
CTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTCACAGCATTC
AATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTAGATGTTATG
GCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAGTAATGCCAC
CATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGGAATTGGTAA
AGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTGGCCGAACAG
CAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAATCCAAGACAA
CCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATGAGGGAACAA
TGTCGATGCACGAGGAGTTCAGCCTCCTGGACGACGTGAGACAAGGCCAA
ATGTGTAGTCGCTGCCTGAGGGATATTAACGAAAGCAACACCAATATGGA
TGATCAATCCTCCATTGCCCCAACCGAAGAAATCTACGAAGATGACGATC
GCAGCATACTAAGCGAAAGCACCTCGAAATGCGATAATAGTGGTGCGGAT
TATAAGGAACGCTTCCGGATTCCCGAGGACCTCAATCCCAACTCTAGCGA
CAAACCAAATCCTTATCGGGACCTAGTCGAGAAATATGAAGCTCTGGTGG
AGGTGAAGAGAACCTCGAATGCGGTCAAGAGCAACTTCACCAGCAATCCA
GATGGGAAGACCATGACCGAGTCCAGTCAAGGCAAAAAATCAGAAACAAT
TGTTAACAGCTCAAAGGAATCTGACCTTATGTTGGATTCAACACGTAAGC
GCACTCCAACCGAGTTTTCGGAATCAGAAACTACATCGTCGGGATTCTCG
GATGAAACTAGCAACAAGTCTACGCAAACTGACGAGCGACCGAGTTACTT
CCTTTGCTCAATAAGTAATGGAAACGATTGTAAATTCAGTATTTATGACG
ACGTCAGCCCCATTGAATCTCATTTCCGTAATCGCCCGGAGTACAGGGAA
CTCTTCAAGGAGATATTTGGAGTGCTCAAGAAGGCAGCTGATAATAACGA
AGAAGACAAGCTTCCGTCCCTGCATGACGACGCACAGATTACAGAAAAAT
TACCCTTGGTGGCGGCCAAAGTACCCCCGGTAACACCCGAGAGGGAGGAA
TCTCCAGATGACTTCATTGACGACACACAGAGCGTCGTATCCTCAGTTAT
ATCCAACCAGTCCATTGCAATGTCCGAGTGCGTTACCAAACTGGAGCGGA
AGACAGCCAAAAAACACATCTTTGATGTCCGAAACCAACAAAACCAATCG
TCCCTAACGCAATCCACTTTGTTAAACAGCTCCTCGAAGGAAACAACTGT
CGGCGAACCGAATTATAAACCCATAAGGGAGAATGGCCAGATACTTACTC
CACTCAAGCGCGAACCACTCGAATATCTAACCGTAGGTGTCGGAATCAAG
AAGAAGAACCGACGAAAGCACCGAAACCAAAGCTCATCTGGAGATCGCAT
CGAATTGTTTAACTCCCGGGAATTTACTCCCAGGAACAGTCCTCTGGCCA
TGAACAACCGTGGTGGTGGACAAGGGAGCTCAAAGATGTGTACGGATACA
TTGAATGCTGAATTCGGACGCAGTAACCGCAGACGGACAACTCCATCCTC
AAGCAACTGGAATGGCTCTCCCATGGTGATCTATAACAAGAATATGAATA
CTCCCCAAACTTCTCGGGGCCGAGTAATAGAGCTCAATGGCGTCGAGTTT
TATCATAACACGGTATCGCAAGACTTACATAAACTTAAAAAGTTAGACTT
ATCCTACGCCGAAGTTTTGCGCCGGGCCGATGCCGGCGAACATGGACCCA
CAAGATCACATTCCCAGCGACAGCAACACAACGGAGCCAACATTCGCAAG
AGTCATCATCATCAGTTTCGTCAAAAGTAAACTTGTTTAGAGAATGTAAA
TAAGCAATTAAACAGTGCATTCTAGCCATAGGGCATTCTACCATTTTTAA
ATTGTGTGTGCCATGCAGTCTAGTCCGCTTTTTCATGTATAGACAGTTAA
ATAACAATAACTAAATAACTATAATCGGAAATTTAATTTTATTTCAGCAT
GATAAAATAAATAATTTAATGACCTACAGAAAAAAAAAAAAAAAAAAA

LD41224.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1962-RA 3087 CG1962-RA 162..2993 1..2832 14160 100 Plus
CG1962.a 2935 CG1962.a 162..2806 1..2645 13225 100 Plus
CG1962-RB 2698 CG1962-RB 81..2698 212..2829 13075 99.9 Plus
CG1962.a 2935 CG1962.a 2807..2841 2798..2832 175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20677391..20680008 2829..212 12970 99.7 Minus
chr2L 23010047 chr2L 20680089..20680304 216..1 1080 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20678918..20681538 2832..212 13090 100 Minus
2L 23513712 2L 20681619..20681834 216..1 1080 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20678918..20681538 2832..212 13090 99.9 Minus
2L 23513712 2L 20681619..20681834 216..1 1080 100 Minus
Blast to na_te.dros performed 2019-03-15 18:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6933..7134 2609..2815 140 56.9 Plus

LD41224.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:18 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20677391..20680003 217..2829 99 <- Minus
chr2L 20680089..20680304 1..216 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:38 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RB 1..2373 258..2630 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:48 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RB 1..2373 258..2630 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:39 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
Cen-RA 1..2373 258..2630 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:15 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RB 1..2373 258..2630 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:22 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
Cen-RA 1..2373 258..2630 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:13 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RA 11..2839 1..2829 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:48 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RA 11..2839 1..2829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:39 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
Cen-RA 13..2841 1..2829 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:16 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
CG1962-RA 11..2839 1..2829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:22 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
Cen-RA 13..2841 1..2829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:18 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20681619..20681834 1..216 100   Minus
2L 20678921..20681533 217..2829 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:18 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20681619..20681834 1..216 100   Minus
2L 20678921..20681533 217..2829 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:18 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20681619..20681834 1..216 100   Minus
2L 20678921..20681533 217..2829 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:39 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20678921..20681533 217..2829 100 <- Minus
arm_2L 20681619..20681834 1..216 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:20 Download gff for LD41224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20678921..20681533 217..2829 100 <- Minus
2L 20681619..20681834 1..216 100   Minus

LD41224.pep Sequence

Translation from 257 to 2629

> LD41224.pep
MEESNHGSAGCENVSQFMLDDLQLAAELGKTLLERNKELETFIKEYKIKG
DEQELEILHLRKHINAMTEVNDSRLKVYEQLEVGIQDLERANQRLNLEKN
RDKKQIKTLTTNTEVLEARCEELSQLLSDARQSLSTERRKVDQYQQERYR
MQHSTEGSVSSHSIQSLCKEQSVEFSKLDVMAIANSTGLEDISFSNATMC
ERTAVKGEDNEELVKLLSEMEVLKRDFLAEQQRCTELEEQLVTIIQDNQG
LQTRLLENSANEGTMSMHEEFSLLDDVRQGQMCSRCLRDINESNTNMDDQ
SSIAPTEEIYEDDDRSILSESTSKCDNSGADYKERFRIPEDLNPNSSDKP
NPYRDLVEKYEALVEVKRTSNAVKSNFTSNPDGKTMTESSQGKKSETIVN
SSKESDLMLDSTRKRTPTEFSESETTSSGFSDETSNKSTQTDERPSYFLC
SISNGNDCKFSIYDDVSPIESHFRNRPEYRELFKEIFGVLKKAADNNEED
KLPSLHDDAQITEKLPLVAAKVPPVTPEREESPDDFIDDTQSVVSSVISN
QSIAMSECVTKLERKTAKKHIFDVRNQQNQSSLTQSTLLNSSSKETTVGE
PNYKPIRENGQILTPLKREPLEYLTVGVGIKKKNRRKHRNQSSSGDRIEL
FNSREFTPRNSPLAMNNRGGGQGSSKMCTDTLNAEFGRSNRRRTTPSSSN
WNGSPMVIYNKNMNTPQTSRGRVIELNGVEFYHNTVSQDLHKLKKLDLSY
AEVLRRADAGEHGPTRSHSQRQQHNGANIRKSHHHQFRQK*

LD41224.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21558-PA 789 GG21558-PA 1..789 1..790 4106 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23524-PA 808 GH23524-PA 6..800 1..778 1874 51.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cen-PB 790 CG1962-PB 1..790 1..790 4044 100 Plus
Cen-PA 790 CG1962-PA 1..790 1..790 4044 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23548-PA 813 GI23548-PA 18..805 15..778 1887 52.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18354-PA 465 GL18354-PA 17..464 344..786 1209 55.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15155-PA 457 GA15155-PA 1..456 334..786 1233 55.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23315-PA 790 GM23315-PA 1..790 1..790 4186 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21689-PA 790 GD21689-PA 1..790 1..790 4202 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23509-PA 814 GJ23509-PA 1..806 1..778 1907 53.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16349-PA 857 GK16349-PA 14..857 13..786 2062 53.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13551-PA 789 GE13551-PA 1..789 1..790 4095 96.7 Plus

LD41224.hyp Sequence

Translation from 257 to 2629

> LD41224.hyp
MEESNHGSAGCENVSQFMLDDLQLAAELGKTLLERNKELETFIKEYKIKG
DEQELEILHLRKHINAMTEVNDSRLKVYEQLEVGIQDLERANQRLNLEKN
RDKKQIKTLTTNTEVLEARCEELSQLLSDARQSLSTERRKVDQYQQERYR
MQHSTEGSVSSHSIQSLCKEQSVEFSKLDVMAIANSTGLEDISFSNATMC
ERTAVKGEDNEELVKLLSEMEVLKRDFLAEQQRCTELEEQLVTIIQDNQG
LQTRLLENSANEGTMSMHEEFSLLDDVRQGQMCSRCLRDINESNTNMDDQ
SSIAPTEEIYEDDDRSILSESTSKCDNSGADYKERFRIPEDLNPNSSDKP
NPYRDLVEKYEALVEVKRTSNAVKSNFTSNPDGKTMTESSQGKKSETIVN
SSKESDLMLDSTRKRTPTEFSESETTSSGFSDETSNKSTQTDERPSYFLC
SISNGNDCKFSIYDDVSPIESHFRNRPEYRELFKEIFGVLKKAADNNEED
KLPSLHDDAQITEKLPLVAAKVPPVTPEREESPDDFIDDTQSVVSSVISN
QSIAMSECVTKLERKTAKKHIFDVRNQQNQSSLTQSTLLNSSSKETTVGE
PNYKPIRENGQILTPLKREPLEYLTVGVGIKKKNRRKHRNQSSSGDRIEL
FNSREFTPRNSPLAMNNRGGGQGSSKMCTDTLNAEFGRSNRRRTTPSSSN
WNGSPMVIYNKNMNTPQTSRGRVIELNGVEFYHNTVSQDLHKLKKLDLSY
AEVLRRADAGEHGPTRSHSQRQQHNGANIRKSHHHQFRQK*

LD41224.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cen-PB 790 CG1962-PB 1..790 1..790 4044 100 Plus
Cen-PA 790 CG1962-PA 1..790 1..790 4044 100 Plus