Clone LD41227 Report

Search the DGRC for LD41227

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:412
Well:27
Vector:pOT2
Associated Gene/TranscriptCG6443-RA
Protein status:LD41227.pep: gold
Preliminary Size:1347
Sequenced Size:1179

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17118 2001-01-01 Release 2 assignment
CG6443 2001-01-01 Release 2 assignment
CG6443 2001-11-09 Blastp of sequenced clone
CG6443 2008-04-29 Release 5.5 accounting
CG6443 2008-08-15 Release 5.9 accounting
CG6443 2008-12-18 5.12 accounting

Clone Sequence Records

LD41227.complete Sequence

1179 bp (1179 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069646

> LD41227.complete
CATTTGTTATTGCTCATAACAGAATTTCTCCATTTACTACAACCTGAAGA
TATATAGTTATTTATATCGTTAGTTTATTTAAATTTGCCCAACAAGGAAT
TCCCAGGAAATATATTGTAATTCTTGAGATAAATATATAATCATGGGTTG
CGATGGAGGAACTATTCCCAGGCGCGATGAGCTGGTGCGCGTGAAGCAAA
AGCCAGAGCAGAAAGACAAAGATGCGGAGAGGGAGTTCCGTTGGCGCCAC
TGCACCTTGACCCAGCAAAGCCTCCAGGAGCCGATCGCCATGTGCGGCAT
GGGTAGGCTCTATTCCAAGCAGAGCGTCATTGAGCGACTGCTGGAGAAGG
AACCGATGCCAGAGACAGCTGCGCACGTGAAGAGCATGAAGGACATTCGC
CAGCTTAATCCCACACCCAATCCCGCCTTCACCGAGGAGGACAAAACTGA
GGGACTGCTGGACACACGACATTCTCCTTACATCTGCAAGCTGATTGGCC
TGGAGATGTCCGGCAAATTTCGCTTTGTGGCCCTTTGGAGCTGCGGATGC
GTTTTATCAGAGCGTGCCTTGAAACAGATCAAAGGCAGTGTGGCTAGCAC
TTGTCCGCTGTGCCAGGCTGCCTATAGCGTTGAGGACGTGGTGGTCCTCA
ATGGCAACGAGGAGGACATGGAGCTCATGCGGGTCAAGATGGAAATGCGT
GCGGCCAAGCGTAAGTCCTCCAAAAAGGACAAGAAGAGTGCCAAAAAGGT
GGAGGTGAAAGCGGAGCCCGCAGAGGAACAGGAGCCAGTGGCGTCCACAT
CCAAGGCTGCAGCCGCAGAGAAGCCCACTACAAGCACAAAAACCAAGGCG
GTGGCGCCGGTCAAACGACTGGGCGCCGTTAATGCAATGCAGGATCCCGA
ACTGAAGCGTCTCAAGAGCGACTTCAGCGTGGCCAAGGACCCGAAGGCCA
GCGATGTTTACAAGTCCCTTTTCACCTCCCATAAAACCGAAAAGGACCAG
GAGCGCGCCCACTGGGTCACCTATAATCCATTCTACAATTAGTCTAGATT
TCGTTTAAGTTTGCTGTGTTAACTCAGTCACATGTCCATAGTTTGATCGT
TGAAACCACACACACAGTTTCAAAATATACAACCGACAATGTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD41227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-RA 1188 CG6443-RA 46..1188 1..1143 5715 100 Plus
CG17118-RA 987 CG17118-RA 1..49 1095..1143 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10728138..10729071 209..1142 4655 99.9 Plus
chr2L 23010047 chr2L 10727942..10728077 76..211 650 98.5 Plus
chr2L 23010047 chr2L 10727789..10727871 1..83 400 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10729369..10730303 209..1143 4675 100 Plus
2L 23513712 2L 10729181..10729308 84..211 640 100 Plus
2L 23513712 2L 10729020..10729102 1..83 415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10729369..10730303 209..1143 4675 100 Plus
2L 23513712 2L 10729181..10729308 84..211 640 100 Plus
2L 23513712 2L 10729020..10729102 1..83 415 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:09:51 has no hits.

LD41227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:37 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10727789..10727871 1..83 98 -> Plus
chr2L 10727950..10728077 84..211 100 -> Plus
chr2L 10728141..10729071 212..1142 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:39 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 143..1042 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:45 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 143..1042 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:54:48 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 143..1042 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:21 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 143..1042 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:34 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 143..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:58 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 46..1187 1..1142 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:45 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 46..1187 1..1142 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:48 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 43..1184 1..1142 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:21 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 46..1187 1..1142 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:34 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 43..1184 1..1142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:37 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10729020..10729102 1..83 100 -> Plus
2L 10729181..10729308 84..211 100 -> Plus
2L 10729372..10730302 212..1142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:37 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10729020..10729102 1..83 100 -> Plus
2L 10729181..10729308 84..211 100 -> Plus
2L 10729372..10730302 212..1142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:37 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10729020..10729102 1..83 100 -> Plus
2L 10729181..10729308 84..211 100 -> Plus
2L 10729372..10730302 212..1142 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:48 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10729020..10729102 1..83 100 -> Plus
arm_2L 10729181..10729308 84..211 100 -> Plus
arm_2L 10729372..10730302 212..1142 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:13 Download gff for LD41227.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10729372..10730302 212..1142 100   Plus
2L 10729020..10729102 1..83 100 -> Plus
2L 10729181..10729308 84..211 100 -> Plus

LD41227.pep Sequence

Translation from 142 to 1041

> LD41227.pep
MGCDGGTIPRRDELVRVKQKPEQKDKDAEREFRWRHCTLTQQSLQEPIAM
CGMGRLYSKQSVIERLLEKEPMPETAAHVKSMKDIRQLNPTPNPAFTEED
KTEGLLDTRHSPYICKLIGLEMSGKFRFVALWSCGCVLSERALKQIKGSV
ASTCPLCQAAYSVEDVVVLNGNEEDMELMRVKMEMRAAKRKSSKKDKKSA
KKVEVKAEPAEEQEPVASTSKAAAAEKPTTSTKTKAVAPVKRLGAVNAMQ
DPELKRLKSDFSVAKDPKASDVYKSLFTSHKTEKDQERAHWVTYNPFYN*

LD41227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15821-PA 301 GF15821-PA 1..301 1..299 1305 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23670-PA 299 GG23670-PA 1..299 1..299 1549 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10425-PA 302 GH10425-PA 1..302 1..299 1209 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-PA 299 CG6443-PA 1..299 1..299 1549 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23474-PA 304 GI23474-PA 1..304 1..299 1201 78.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26629-PA 295 GL26629-PA 1..295 1..299 1256 82.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19597-PA 295 GA19597-PA 1..295 1..299 1251 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18716-PA 299 GM18716-PA 1..299 1..299 1568 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20679-PA 300 GJ20679-PA 1..300 1..299 1207 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14667-PA 299 GK14667-PA 1..299 1..299 1135 71.1 Plus
Dwil\GK12490-PA 104 GK12490-PA 35..102 45..110 214 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18483-PA 299 GE18483-PA 1..299 1..299 1458 95 Plus

LD41227.hyp Sequence

Translation from 142 to 1041

> LD41227.hyp
MGCDGGTIPRRDELVRVKQKPEQKDKDAEREFRWRHCTLTQQSLQEPIAM
CGMGRLYSKQSVIERLLEKEPMPETAAHVKSMKDIRQLNPTPNPAFTEED
KTEGLLDTRHSPYICKLIGLEMSGKFRFVALWSCGCVLSERALKQIKGSV
ASTCPLCQAAYSVEDVVVLNGNEEDMELMRVKMEMRAAKRKSSKKDKKSA
KKVEVKAEPAEEQEPVASTSKAAAAEKPTTSTKTKAVAPVKRLGAVNAMQ
DPELKRLKSDFSVAKDPKASDVYKSLFTSHKTEKDQERAHWVTYNPFYN*

LD41227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-PA 299 CG6443-PA 1..299 1..299 1549 100 Plus