Clone LD41235 Report

Search the DGRC for LD41235

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:412
Well:35
Vector:pOT2
Associated Gene/Transcriptelgi-RA
Protein status:LD41235.pep: gold
Preliminary Size:1601
Sequenced Size:1554

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17033 2001-01-01 Release 2 assignment
CG17033 2001-07-04 Blastp of sequenced clone
CG17033 2003-01-01 Sim4 clustering to Release 3
CG17033 2008-04-29 Release 5.5 accounting
CG17033 2008-08-15 Release 5.9 accounting
CG17033 2008-12-18 5.12 accounting

Clone Sequence Records

LD41235.complete Sequence

1554 bp (1554 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051931

> LD41235.complete
CTCAGTCACACTACACAACACTGCACTGACTGAACCGAAAAAAAAACACA
CAGATTTTGCAATCCGCAGAAAAGAATTATTAATAGTATTTTTATGCGGA
TGGCCAGCGTGCTGAGGACCTAAGATGGGCTACGATGTGAATCGCTTTCA
GGGGGAGGTGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTG
AGGATCCGCTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGC
ATTAACGAGTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTC
CCTGACTACTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTAC
TGTCCAGACTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCT
GTTCTCAAGCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAA
TCCGAAGCGACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCA
AGGATGAGCTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATT
GTCAAGCAGACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCA
GCAGCTGACTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACT
TTATGCGTGCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGAC
CAGATGGAGCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGC
CAGGGTTACGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGC
AGCTCATGATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATC
CTGGATAGTCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCT
CAGTTCGCTAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATG
TGTGTCGACGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGAC
AACCTCCACATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGAT
CTTCGCCCATGGCATCGAGTAGGCCCTCAGCCGCTGATTAACCACTTATC
CTAGGTTAAATGCTAACTATATCGAACAGTGCTCAGTTTTGTTGATTCCT
TAACGTAAGAGTAAGCATTAAAAACAATATTGTAAGGAAAAACTCGCAAA
ACAAACCATTCAAGCGCCTCATGACGACTTTCAAGTTGTACAAAAAATAT
ATATTACTTTCGGTTCATTGTGTTTTATCCATTTAGTTAGTACGCAAATT
CGTATACATCATCAAGTCGTTCGCATATACCCAATATTACATGTTTGATT
AAGCGATCTCAACAAATGTCCCTTTGTTATCGTTCACTTCATTCTCATTT
TGATGGAAGGAAGCTGTGAATGTCCTAATTCGCGTTTAAATTCGTATTGC
ACAACTTACTTAAATTTCTGAAATATTTGTCAATACTTTTAGATTAAATG
TGGAAAGAGTAATAAACAGTTTATTTAACTAATGTAAAAAAAAAAAAAAA
AAAA

LD41235.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-RA 1724 elgi-RA 125..1660 1..1536 7680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15947684..15948253 966..1535 2835 99.8 Plus
chr3L 24539361 chr3L 15946954..15947402 354..802 2245 100 Plus
chr3L 24539361 chr3L 15946448..15946661 1..215 1025 99.5 Plus
chr3L 24539361 chr3L 15947457..15947625 801..969 845 100 Plus
chr3L 24539361 chr3L 15946739..15946884 212..357 730 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15957864..15958434 966..1536 2855 100 Plus
3L 28110227 3L 15957135..15957583 354..802 2245 100 Plus
3L 28110227 3L 15956626..15956840 1..215 1075 100 Plus
3L 28110227 3L 15957637..15957805 801..969 845 100 Plus
3L 28110227 3L 15956920..15957065 212..357 730 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15950964..15951534 966..1536 2855 100 Plus
3L 28103327 3L 15950235..15950683 354..802 2245 100 Plus
3L 28103327 3L 15949726..15949940 1..215 1075 100 Plus
3L 28103327 3L 15950737..15950905 801..969 845 100 Plus
3L 28103327 3L 15950020..15950165 212..357 730 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:09:55 has no hits.

LD41235.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:39 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15946448..15946660 1..214 99 -> Plus
chr3L 15946742..15946884 215..357 100 -> Plus
chr3L 15946958..15947402 358..802 100 -> Plus
chr3L 15947459..15947624 803..968 100 -> Plus
chr3L 15947687..15948253 969..1535 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:39 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 1..948 125..1072 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:50 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 1..948 125..1072 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:54:50 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 1..948 125..1072 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:17 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 1..948 125..1072 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:36 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 1..948 125..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:14 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 77..1611 1..1535 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:50 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 77..1611 1..1535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:50 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 77..1611 1..1535 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:17 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
CG17033-RA 77..1611 1..1535 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:36 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
elgi-RA 77..1611 1..1535 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:39 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15956626..15956839 1..214 100 -> Plus
3L 15956923..15957065 215..357 100 -> Plus
3L 15957139..15957583 358..802 100 -> Plus
3L 15957639..15957804 803..968 100 -> Plus
3L 15957867..15958433 969..1535 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:39 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15956626..15956839 1..214 100 -> Plus
3L 15956923..15957065 215..357 100 -> Plus
3L 15957139..15957583 358..802 100 -> Plus
3L 15957639..15957804 803..968 100 -> Plus
3L 15957867..15958433 969..1535 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:39 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15956626..15956839 1..214 100 -> Plus
3L 15956923..15957065 215..357 100 -> Plus
3L 15957139..15957583 358..802 100 -> Plus
3L 15957639..15957804 803..968 100 -> Plus
3L 15957867..15958433 969..1535 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:50 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15950023..15950165 215..357 100 -> Plus
arm_3L 15949726..15949939 1..214 100 -> Plus
arm_3L 15950239..15950683 358..802 100 -> Plus
arm_3L 15950739..15950904 803..968 100 -> Plus
arm_3L 15950967..15951533 969..1535 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:22 Download gff for LD41235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15950739..15950904 803..968 100 -> Plus
3L 15949726..15949939 1..214 100 -> Plus
3L 15950023..15950165 215..357 100 -> Plus
3L 15950239..15950683 358..802 100 -> Plus
3L 15950967..15951533 969..1535 100   Plus

LD41235.hyp Sequence

Translation from 124 to 1071

> LD41235.hyp
MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQ
PTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYN
SHLDECIHNPKRPFPCEKGCGFDIPKDELKDHNCVRELRTLIVKQTEKMG
ELKSELTDQQLTINELKRELQLFKDFMRAMRVSNPAMRAIADQMERDEVI
RWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFC
HERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDV
MIDPGLVMIFAHGIE*

LD41235.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-PB 315 CG17033-PB 1..315 1..315 1690 100 Plus
elgi-PA 315 CG17033-PA 1..315 1..315 1690 100 Plus
CG9014-PB 328 CG9014-PB 1..318 1..314 804 45.3 Plus
CG9014-PA 328 CG9014-PA 1..318 1..314 804 45.3 Plus

LD41235.pep Sequence

Translation from 124 to 1071

> LD41235.pep
MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQ
PTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYN
SHLDECIHNPKRPFPCEKGCGFDIPKDELKDHNCVRELRTLIVKQTEKMG
ELKSELTDQQLTINELKRELQLFKDFMRAMRVSNPAMRAIADQMERDEVI
RWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFC
HERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDV
MIDPGLVMIFAHGIE*

LD41235.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24099-PA 315 GF24099-PA 1..315 1..315 1670 98.1 Plus
Dana\GF21698-PA 332 GF21698-PA 1..319 1..315 781 45.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15934-PA 315 GG15934-PA 1..315 1..315 1680 99.4 Plus
Dere\GG10187-PA 332 GG10187-PA 1..319 1..315 779 44.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14771-PA 315 GH14771-PA 1..315 1..315 1621 94.6 Plus
Dgri\GH13876-PA 336 GH13876-PA 1..319 1..315 703 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
elgi-PB 315 CG17033-PB 1..315 1..315 1690 100 Plus
elgi-PA 315 CG17033-PA 1..315 1..315 1690 100 Plus
CG9014-PB 328 CG9014-PB 1..318 1..314 804 45.3 Plus
CG9014-PA 328 CG9014-PA 1..318 1..314 804 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11873-PA 315 GI11873-PA 1..315 1..315 1624 94.6 Plus
Dmoj\GI17673-PA 334 GI17673-PA 1..319 1..315 746 43.3 Plus
Dmoj\GI10082-PA 334 GI10082-PA 1..319 1..315 737 43.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25216-PA 315 GL25216-PA 1..315 1..315 1661 97.8 Plus
Dper\GL15421-PA 314 GL15421-PA 1..314 1..311 690 40 Plus
Dper\GL25685-PA 193 GL25685-PA 1..193 1..194 432 41.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14285-PA 315 GA14285-PA 1..315 1..315 1661 97.8 Plus
Dpse\GA21478-PA 327 GA21478-PA 1..318 1..315 705 40.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25563-PA 315 GM25563-PA 1..315 1..315 1680 99.4 Plus
Dsec\GM25378-PA 332 GM25378-PA 1..318 1..314 780 45 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14579-PA 314 GD14579-PA 1..314 1..315 1486 88.6 Plus
Dsim\GD22050-PA 332 GD22050-PA 1..318 1..314 780 45 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13569-PA 315 GJ13569-PA 1..315 1..315 1622 94.3 Plus
Dvir\GJ17869-PA 334 GJ17869-PA 1..319 1..315 761 44.2 Plus
Dvir\GJ18365-PA 334 GJ18365-PA 1..319 1..315 748 43.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24430-PA 315 GK24430-PA 1..315 1..315 1666 98.4 Plus
Dwil\GK16866-PA 361 GK16866-PA 1..318 1..314 765 44 Plus
Dwil\GK24545-PA 323 GK24545-PA 1..318 1..314 718 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22867-PA 315 GE22867-PA 1..315 1..315 1680 99.4 Plus
Dyak\GE22283-PA 315 GE22283-PA 29..315 29..315 1525 98.6 Plus
Dyak\GE11492-PA 332 GE11492-PA 1..319 1..315 771 44.2 Plus