Clone LD41276 Report

Search the DGRC for LD41276

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:412
Well:76
Vector:pOT2
Associated Gene/TranscriptCG32207-RA
Protein status:LD41276.pep: validated full length
Preliminary Size:1228
Sequenced Size:1102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32207 2002-05-31 Blastp of sequenced clone
CG32207 2003-01-01 Sim4 clustering to Release 3
CG32207 2008-04-29 Release 5.5 accounting
CG32207 2008-08-15 Release 5.9 accounting
CG32207 2008-12-18 5.12 accounting

Clone Sequence Records

LD41276.complete Sequence

1102 bp (1102 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118337

> LD41276.complete
CAAGTGATCACATGTTGATAATTTAGATGAGGACCTGCGCAGCAGCAGAG
GCGCAGCTGATTGGAGCGGAGTTGGCCAAACGCGAAGGGTAGGCAAAAGG
AAGCAATCTCAGAAGCAGCATCGATACCATTGCTGTTCCTGGCGATAACC
TGGCTACTGGTGGCGGTCACAACTGGAGCGGGAGCAGCTACCACGGCAGC
AGGAGCAGAGTAGGCCAGAGGAGCAGAGTAAGCCAGAGGACCAGTGTACG
CCAGGGCAGCACCCAGGACTCCAGGCTTGGCAGCAGCGCAGGCGACGGTT
ATCAGGACAAGGACGGCCTGTTAACAAATCAGCTTGATTAGTTTAATCAT
CTGGGTCCTTTCTGATGAACTTTATGTGATTTCCCACTGCTGACTGCAGA
ATGTGGAATAACTCTTGGTGGCCACGGAATGCGATGGCCTGAGGTCACAG
GCGCAGTCCCGATGCGGCGCATAAATAGTGGAATGGAATGTGTTGGGCGA
CATCAGGTTCAAGTTTTCGAACCGAAAGCACCAGATCCATAATCCAAATG
TTTAAATCCGACGTCCTTGTCTTGGCCATCGTCTCCTGCTCTGCTGCCAA
GCCTGGACTGATTGGTGCGCCTTTGGCCTACACTGCTTACGTGGCTTACT
CTCCTCTGGCTGTACTAATGGCCTACCCCTCGCCTTTGGCCTACTCCGCA
CCACTGAGCTACGCCGTTCCATCTGCACCGCTTCTTATCTAAATTACTAA
GCTGTGATCACCTCGGAGGCGACGATAATAAATGGAGATATAATAAGACG
TTATTCAATTGTATATTCTTATTTAAGCACGCTTCAAATTAATATTCATT
TATTTCAATGAAAAATTAGCTCTGAACGTACACGAAAATGATTGCTAGAA
AATTTCCCAGCATTGATTAACAATTATTCCAATTATTCTTATTCTTATAT
TATAATTTTAACGACTGATGCATTTCTCAATCACAGCCATTTCTAAATCA
ATCGTCAAATCTAAACTAACTGCAAATTTTAAAAGTATTGTAGTGATTTA
GAAAATATAGGTCTTTCGCTAAATGATTACCGAAAAAAAAAAAAAAAAAA
AA

LD41276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32207-RA 1188 CG32207-RA 44..1128 1..1085 5425 100 Plus
DMG5-MB6.chr3L.33.005.b 1085 DMG5-MB6.chr3L.33.005.b 39..650 1..610 2900 98.5 Plus
CG32207.a 893 CG32207.a 370..893 559..1082 2620 100 Plus
CG32207.a 893 CG32207.a 1..370 1..370 1850 100 Plus
DMG5-MB6.chr3L.33.005.b 1085 DMG5-MB6.chr3L.33.005.b 873..1085 668..884 715 89.4 Plus
DMG5-MB6.chr3L.33.005.b 1085 DMG5-MB6.chr3L.33.005.b 699..796 199..102 235 82.6 Minus
CG32207-RA 1188 CG32207-RA 605..699 315..221 145 76.8 Minus
CG32207-RA 1188 CG32207-RA 264..358 656..562 145 76.8 Minus
CG32207.a 893 CG32207.a 221..315 656..562 145 76.8 Minus
CG32207.a 893 CG32207.a 373..467 315..221 145 76.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19466752..19467274 1082..560 2555 99.2 Minus
chr3L 24539361 chr3L 19467725..19468094 370..1 1805 99.2 Minus
chr3L 24539361 chr3L 19413199..19413570 370..1 1720 98.1 Minus
chr3L 24539361 chr3L 19467329..19467518 560..371 950 100 Minus
chr3L 24539361 chr3L 19412803..19412992 560..371 905 98.4 Minus
chr3L 24539361 chr3L 19477405..19477669 370..99 895 90.1 Minus
chr3L 24539361 chr3L 19412217..19412475 930..668 845 89 Minus
chr3L 24539361 chr3L 19462325..19462614 651..930 785 86.1 Plus
chr3L 24539361 chr3L 19461785..19461978 371..560 755 93.8 Plus
chr3L 24539361 chr3L 19464935..19465128 560..371 755 93.8 Minus
chr3L 24539361 chr3L 19462022..19462248 328..102 745 88.5 Minus
chr3L 24539361 chr3L 19464665..19464891 102..328 745 88.5 Plus
chr3L 24539361 chr3L 19456169..19456364 102..297 740 91.8 Plus
chr3L 24539361 chr3L 19456439..19456632 560..371 740 93.3 Minus
chr3L 24539361 chr3L 19457140..19457306 651..817 625 91.6 Plus
chr3L 24539361 chr3L 19456854..19457090 356..102 535 81.6 Minus
chr3L 24539361 chr3L 19465345..19465581 356..102 520 81.2 Minus
chr3L 24539361 chr3L 19461332..19461568 102..356 505 80.8 Plus
chr3L 24539361 chr3L 19477707..19477805 99..1 465 98 Minus
chr3L 24539361 chr3L 19476190..19476308 786..668 460 92.4 Minus
chr3L 24539361 chr3L 19476596..19476660 560..496 325 100 Minus
chr3L 24539361 chr3L 19461136..19461243 758..651 300 85.2 Minus
chr3L 24539361 chr3L 19465670..19465777 651..758 300 85.2 Plus
chr3L 24539361 chr3L 19477091..19477162 499..428 270 91.7 Minus
chr3L 24539361 chr3L 19412698..19412748 610..560 255 100 Minus
chr3L 24539361 chr3L 19412552..19412649 102..199 235 82.7 Plus
chr3L 24539361 chr3L 19462674..19462747 1009..1082 220 86.5 Plus
chr3L 24539361 chr3L 19414163..19414240 187..110 210 84.6 Minus
chr3L 24539361 chr3L 19476472..19476526 656..601 185 92.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CR32205-RA 1085 CR32205-RA 39..650 1..610 2900 98.5 Plus
pncr009:3L-RA 961 CR33940-RA 202..460 155..411 955 91.8 Plus
CR32205-RA 1085 CR32205-RA 873..1085 668..884 715 89.4 Plus
pncr009:3L-RA 961 CR33940-RA 19..117 1..99 465 97.9 Plus
pncr009:3L-RA 961 CR33940-RA 834..952 668..786 460 92.4 Plus
pncr009:3L-RA 961 CR33940-RA 537..618 496..577 410 100 Plus
CR32205-RA 1085 CR32205-RA 699..796 199..102 235 82.6 Minus
pncr009:3L-RA 961 CR33940-RA 155..203 99..147 215 95.9 Plus
pncr009:3L-RA 961 CR33940-RA 460..513 428..481 195 90.7 Plus
pncr009:3L-RA 961 CR33940-RA 616..670 601..656 180 91 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19477326..19477851 1085..560 2630 100 Minus
3L 28110227 3L 19478300..19478669 370..1 1850 100 Minus
3L 28110227 3L 19423774..19424145 370..1 1720 98.1 Minus
3L 28110227 3L 19477906..19478095 560..371 950 100 Minus
3L 28110227 3L 19423378..19423567 560..371 920 98.9 Minus
3L 28110227 3L 19487970..19488234 370..99 880 89.8 Minus
3L 28110227 3L 19422792..19423050 930..668 860 89.4 Minus
3L 28110227 3L 19472902..19473191 651..930 770 85.7 Plus
3L 28110227 3L 19472362..19472555 371..560 755 93.8 Plus
3L 28110227 3L 19475512..19475705 560..371 755 93.8 Minus
3L 28110227 3L 19472599..19472825 328..102 745 88.5 Minus
3L 28110227 3L 19475242..19475468 102..328 745 88.5 Plus
3L 28110227 3L 19467017..19467210 560..371 740 93.3 Minus
3L 28110227 3L 19466747..19466973 102..328 730 88.1 Plus
3L 28110227 3L 19467718..19467884 651..817 610 91 Plus
3L 28110227 3L 19467432..19467668 356..102 505 80.8 Minus
3L 28110227 3L 19471909..19472145 102..356 505 80.8 Plus
3L 28110227 3L 19475922..19476158 356..102 505 80.8 Minus
3L 28110227 3L 19488272..19488370 99..1 465 98 Minus
3L 28110227 3L 19486755..19486873 786..668 460 92.4 Minus
3L 28110227 3L 19487161..19487225 560..496 325 100 Minus
3L 28110227 3L 19471713..19471820 758..651 300 85.2 Minus
3L 28110227 3L 19476247..19476354 651..758 300 85.2 Plus
3L 28110227 3L 19487656..19487727 499..428 270 91.7 Minus
3L 28110227 3L 19423273..19423323 610..560 255 100 Minus
3L 28110227 3L 19423127..19423224 102..199 235 82.7 Plus
3L 28110227 3L 19473252..19473327 1010..1085 230 86.8 Plus
3L 28110227 3L 19424757..19424834 187..110 210 84.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19470426..19470951 1085..560 2630 100 Minus
3L 28103327 3L 19471400..19471769 370..1 1850 100 Minus
3L 28103327 3L 19416874..19417245 370..1 1730 98.1 Minus
3L 28103327 3L 19471006..19471195 560..371 950 100 Minus
3L 28103327 3L 19416478..19416667 560..371 920 98.9 Minus
3L 28103327 3L 19415892..19416150 930..668 870 89.3 Minus
3L 28103327 3L 19481070..19481287 370..155 810 92.2 Minus
3L 28103327 3L 19466002..19466223 651..876 775 90.2 Plus
3L 28103327 3L 19465462..19465655 371..560 765 93.8 Plus
3L 28103327 3L 19468612..19468805 560..371 765 93.8 Minus
3L 28103327 3L 19460117..19460310 560..371 750 93.2 Minus
3L 28103327 3L 19468342..19468568 102..328 745 88.5 Plus
3L 28103327 3L 19465699..19465925 328..102 745 88.5 Minus
3L 28103327 3L 19459847..19460073 102..328 730 88.1 Plus
3L 28103327 3L 19460818..19460984 651..817 610 91 Plus
3L 28103327 3L 19460630..19460768 240..102 485 89.9 Minus
3L 28103327 3L 19465009..19465147 102..240 485 89.9 Plus
3L 28103327 3L 19469120..19469258 240..102 485 89.9 Minus
3L 28103327 3L 19481372..19481470 99..1 465 97.9 Minus
3L 28103327 3L 19479855..19479973 786..668 460 92.4 Minus
3L 28103327 3L 19480261..19480325 560..496 325 100 Minus
3L 28103327 3L 19465108..19465186 219..297 305 92.4 Plus
3L 28103327 3L 19469081..19469159 297..219 305 92.4 Minus
3L 28103327 3L 19460591..19460669 297..219 305 92.4 Minus
3L 28103327 3L 19469347..19469454 651..758 300 85.1 Plus
3L 28103327 3L 19464813..19464920 758..651 300 85.1 Minus
3L 28103327 3L 19480756..19480827 499..428 270 91.6 Minus
3L 28103327 3L 19416373..19416423 610..560 255 100 Minus
3L 28103327 3L 19416227..19416324 102..199 235 82.6 Plus
3L 28103327 3L 19466352..19466427 1010..1085 230 86.8 Plus
3L 28103327 3L 19481286..19481334 147..99 215 95.9 Minus
3L 28103327 3L 19466232..19466291 871..930 210 90 Plus
3L 28103327 3L 19417857..19417934 187..110 210 84.6 Minus
3L 28103327 3L 19480137..19480191 656..601 180 91 Minus
3L 28103327 3L 19479805..19479854 851..802 175 90 Minus
3L 28103327 3L 19465723..19465806 573..656 165 79.7 Plus
3L 28103327 3L 19470855..19470962 221..328 165 76.8 Plus
3L 28103327 3L 19468461..19468544 656..573 165 79.7 Minus
3L 28103327 3L 19459966..19460049 656..573 165 79.7 Minus
3L 28103327 3L 19461007..19461056 881..930 160 88 Plus
3L 28103327 3L 19460596..19460667 585..656 150 80.5 Plus
3L 28103327 3L 19469086..19469157 585..656 150 80.5 Plus
3L 28103327 3L 19465110..19465181 656..585 150 80.5 Minus
3L 28103327 3L 19457533..19457618 103..188 145 77.9 Plus
3L 28103327 3L 19471455..19471549 562..656 145 76.8 Plus
3L 28103327 3L 19416376..19416434 270..328 145 83 Plus
3L 28103327 3L 19480827..19480867 411..371 145 90.2 Minus
Blast to na_te.dros performed 2019-03-16 16:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 169..244 138 68.4 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2667..2776 813..926 127 61.7 Plus
TAHRE 10463 TAHRE OSV 10463bp 6767..6809 956..914 125 76.7 Minus

LD41276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:21 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19466752..19467274 560..1082 99 <- Minus
chr3L 19467330..19467518 371..559 100 <- Minus
chr3L 19467725..19468094 1..370 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:41 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG32207-RA 1..255 488..742 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:44 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 33..216 114..297 92   Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:29 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 33..216 114..297 92   Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:34 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG32207-RA 1..255 488..742 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:38:04 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG12519-RA 33..216 114..297 92   Minus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:36:14 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CR32205-RA 39..673 1..644 96 -> Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:04 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG32207-RA 1..1082 1..1082 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:44 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG33255-RB 2..329 1..326 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:29 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG33255-RB 2..329 1..326 98   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:34 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
CG32207-RA 1..1082 1..1082 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 12:38:04 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:21 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19477329..19477851 560..1082 100 <- Minus
3L 19477907..19478095 371..559 100 <- Minus
3L 19478300..19478669 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:21 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19477329..19477851 560..1082 100 <- Minus
3L 19477907..19478095 371..559 100 <- Minus
3L 19478300..19478669 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:21 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19477329..19477851 560..1082 100 <- Minus
3L 19477907..19478095 371..559 100 <- Minus
3L 19478300..19478669 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:29 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19470429..19470951 560..1082 100 <- Minus
arm_3L 19471007..19471195 371..559 100 <- Minus
arm_3L 19471400..19471769 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:43 Download gff for LD41276.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19470429..19470951 560..1082 100 <- Minus
3L 19471007..19471195 371..559 100 <- Minus
3L 19471400..19471769 1..370 100   Minus

LD41276.pep Sequence

Translation from 487 to 741

> LD41276.pep
MCWATSGSSFRTESTRSIIQMFKSDVLVLAIVSCSAAKPGLIGAPLAYTA
YVAYSPLAVLMAYPSPLAYSAPLSYAVPSAPLLI*

LD41276.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13407-PA 135 GG13407-PA 1..44 21..79 141 57.6 Plus
Dere\GG13406-PA 105 GG13406-PA 1..105 21..84 131 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32214-PC 116 CG32214-PC 1..116 21..84 175 41.4 Plus
CG32214-PB 116 CG32214-PB 1..116 21..84 175 41.4 Plus
CG14096-PA 122 CG14096-PA 1..54 21..83 167 57.1 Plus
CG12519-PB 131 CG12519-PB 1..54 21..83 167 57.1 Plus
CG12519-PA 131 CG12519-PA 1..54 21..83 167 57.1 Plus
CG18294-PA 141 CG18294-PA 1..54 21..83 167 57.1 Plus
825-Oak-PB 129 CG32208-PB 1..47 21..67 152 63.8 Plus
CG32213-PB 129 CG32213-PB 1..47 21..67 152 63.8 Plus

LD41276.hyp Sequence

Translation from 487 to 741

> LD41276.hyp
MCWATSGSSFRTESTRSIIQMFKSDVLVLAIVSCSAAKPGLIGAPLAYTA
YVAYSPLAVLMAYPSPLAYSAPLSYAVPSAPLLI*

LD41276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32214-PC 116 CG32214-PC 1..116 21..84 175 41.4 Plus
CG32214-PB 116 CG32214-PB 1..116 21..84 175 41.4 Plus
CG14096-PA 122 CG14096-PA 1..54 21..83 167 57.1 Plus
CG12519-PB 131 CG12519-PB 1..54 21..83 167 57.1 Plus
CG12519-PA 131 CG12519-PA 1..54 21..83 167 57.1 Plus