Clone LD41311 Report

Search the DGRC for LD41311

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:413
Well:11
Vector:pOT2
Associated Gene/TranscriptGga-RB
Protein status:LD41311.pep: gold
Preliminary Size:2302
Sequenced Size:2372

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3002 2001-09-19 Blastp of sequenced clone
CG3002 2003-01-01 Sim4 clustering to Release 3
Gga 2008-04-29 Release 5.5 accounting
Gga 2008-08-15 Release 5.9 accounting
Gga 2008-12-18 5.12 accounting

Clone Sequence Records

LD41311.complete Sequence

2372 bp (2372 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058693

> LD41311.complete
CGATAGTGTCGACGGAAGAACAACAACAATATGTCTGATGTTCGAAATCA
ACGCAAATATTATTTATCCCCCAGTTAATATAATTGAGCCCGCACAATGA
CAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGAGCAACAAATCCG
GCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTGCATTGTGGTCAA
AAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGATTGTGGCCAAGG
TGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATTTCGCTGCTGGAG
GAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGAGGCGTCCAAATT
CCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGAAGTACAAGGGCG
CCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAGTGCCTACTGCTG
TGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGATGCCTACGACAT
GTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGGAGGCGGCGGTGG
CCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCCATGTTCGCCAAG
CTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGCCAATCTACTGCT
GCAGTATCGGATGGCACAGGAGGCGCGTCGCAACGATCTGCTGGCCCAGC
ATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGCAGCTGCTCAACCAA
ATGCTGGACACCTACGATCCCGCCAACCAGGACGTCAGCGAAACACTGCA
CGAGCTATACAAGAGCTGCAAGAAGCACAAGCCCATCTTTCAGCATCTGC
CGCAGCTGCTGGACGATTCCGATGCGCAGCTTGTAGCTGACACTCTGGAT
GCCAATTGCGCTCTACTGGCCACCATGCAGCGCTACAAGCTTCTGGTGCC
ATCGCCCACAAGGAGCACCGCTGCTGCCTTGACCACGAGTGCTCCAACAG
TAGCTAGTTCAGTGAAGTCGACGGCCAGCTCGACCACAGCCACCACTAGC
TCCAATAACGCCCAGTTGCTGAACGAACTGCTCGGCGATTTGCTCATCGA
CGGAAGCAATAAAGCTGCAACTACAGCCACCACAAGCCTACCAAATGCCG
CGGCTAGCGGTTCGAATCCGCTGGCCGATTTAAGTGACATCTTTAGCAGC
GCTCTGGCCGAAAGCGAAGCGAAGCAGCAGAGTCAGCCATTCCAGAATGC
AACCACGCTGCTGGAGCCGCAGGTCATTAGTCAGGGCACCACAACCGAGG
CTTTGGCCAATGGCAATGGAGGCAGCGCCAGCAAAGTGCCGGAAACAATC
AGAAAGATGCCGCAAATCGATATGCTCAGCGAGGAGCTGTTCCAGCAGAT
CCTGCCCACCCAGGATCGGATGCCCAGCTTCAAGCGGGATCCCGAGAAGA
TCACGCTAAACGACTTGGCACGCGAACGAATGCACATAAAGGCGCCAGAG
GAGCCAACGACTGCTAATGACCCAGCTTCTGATAGTGCTCCTGCTATTGC
CACTGCCACAGCTACTGTTGATTCCATAGACGATGTTCCTTTACTCAGCG
ATGATGTGGAAAAGAAGGATGAAGCCGTCGTGGCTCCAGTGACAGTTGTA
CCGCCGGCCAAGCCGCTAAGCGAAATCAATGTGGAACTGGACAATATACA
GGCCACCGGGGAGCAGCGCATCGTTCTCGACGACGACGACATGCAGCTCA
GTCTGAACTTCACCAGCGATCGGCCCGGCCATCGTGTGTCGGTGATTGTG
ATATCGGCTCAGAACAAGAGTCGCCAGCCAGTGCGCGACTTTCAGTTCGA
GGCCAGCGTGAAGAAGCCCTGCAAGGTGCGCCTGTTGACGCCGACGGACA
GCCAAATGCCGCCGCACAAGCCCTTCCGCCCGGCCACGCCCATCAACCAG
GTGATGCTCCTGCTAAATCCGACAGGCAAGGCCGTGGACGTAACATGCAT
TGTGGGCTACAAGCTGGGCGACGATCCGGATCCCATCAAGGAATCGATTG
TGGCCAAAGGCATTGACTATGTGGACTAAAATACCCCGACATATAAGTAT
CACCCGCTCCCGTCCACTGAAAGCGCAGGAGGAAAATGAAAAGAACGAAA
GACAGTCAATTTTCCCGCATCTATGTTGTGCTCCCCATTATCTTAAAGAT
ACTTTTGGTTTTTCAATTTCTGTATTGTATGTGTATGTACGCTGATAAGA
TTTTTATTCAAATTGCATTTTGCATACAAACGATTTAGTCGTAATATAAT
TATGTATCAAAGGTTTATAAATTATGAAAAAGTCGCTACAAAAGCCAAAA
AAAAAAAAAAAAAAAAAAAAAA

LD41311.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-RB 2488 Gga-RB 128..2475 1..2348 11740 100 Plus
Gga.a 2316 Gga.a 259..2316 291..2348 10290 100 Plus
Gga.b 2200 Gga.b 143..2200 291..2348 10290 100 Plus
Gga.a 2316 Gga.a 11..263 1..253 1250 99.6 Plus
Gga.b 2200 Gga.b 11..143 1..133 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9494458..9495439 885..1866 4910 100 Plus
chrX 22417052 chrX 9493795..9494390 291..886 2980 100 Plus
chrX 22417052 chrX 9495514..9495995 1865..2346 2410 100 Plus
chrX 22417052 chrX 9492968..9493126 133..291 795 100 Plus
chrX 22417052 chrX 9492759..9492891 1..133 665 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9602743..9603724 885..1866 4910 100 Plus
X 23542271 X 9602080..9602675 291..886 2980 100 Plus
X 23542271 X 9603799..9604282 1865..2348 2420 100 Plus
X 23542271 X 9601253..9601411 133..291 795 100 Plus
X 23542271 X 9601044..9601176 1..133 665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9610841..9611822 885..1866 4910 100 Plus
X 23527363 X 9610178..9610773 291..886 2980 100 Plus
X 23527363 X 9611897..9612380 1865..2348 2420 100 Plus
X 23527363 X 9609351..9609509 133..291 795 100 Plus
X 23527363 X 9609142..9609274 1..133 665 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:30:34 has no hits.

LD41311.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:45 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9492759..9492891 1..133 100 -> Plus
chrX 9492969..9493126 134..291 100 -> Plus
chrX 9493796..9494390 292..886 100 -> Plus
chrX 9494460..9495439 887..1866 100 -> Plus
chrX 9495516..9495995 1867..2346 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:43 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 97..2079 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:31 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 97..2079 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:38 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 97..2079 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:55 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 97..2079 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:22 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 97..2079 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:41 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 11..2356 1..2346 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:31 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 11..2356 1..2346 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:38 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 15..2360 1..2346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:56 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 11..2356 1..2346 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:22 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 15..2360 1..2346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:45 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
X 9601254..9601411 134..291 100 -> Plus
X 9602081..9602675 292..886 100 -> Plus
X 9602745..9603724 887..1866 100 -> Plus
X 9603801..9604280 1867..2346 100   Plus
X 9601044..9601176 1..133 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:45 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
X 9601254..9601411 134..291 100 -> Plus
X 9602081..9602675 292..886 100 -> Plus
X 9602745..9603724 887..1866 100 -> Plus
X 9603801..9604280 1867..2346 100   Plus
X 9601044..9601176 1..133 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:45 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
X 9601254..9601411 134..291 100 -> Plus
X 9602081..9602675 292..886 100 -> Plus
X 9602745..9603724 887..1866 100 -> Plus
X 9603801..9604280 1867..2346 100   Plus
X 9601044..9601176 1..133 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:38 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9495287..9495444 134..291 100 -> Plus
arm_X 9495077..9495209 1..133 100 -> Plus
arm_X 9496114..9496708 292..886 100 -> Plus
arm_X 9496778..9497757 887..1866 100 -> Plus
arm_X 9497834..9498313 1867..2346 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:16 Download gff for LD41311.complete
Subject Subject Range Query Range Percent Splice Strand
X 9610179..9610773 292..886 100 -> Plus
X 9610843..9611822 887..1866 100 -> Plus
X 9611899..9612378 1867..2346 100   Plus
X 9609142..9609274 1..133 100 -> Plus
X 9609352..9609509 134..291 100 -> Plus

LD41311.pep Sequence

Translation from 96 to 2078

> LD41311.pep
MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA
KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK
GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA
VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA
QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH
LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP
TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN
AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT
EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE
KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL
SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ
LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT
DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES
IVAKGIDYVD*

LD41311.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22567-PA 671 GF22567-PA 1..671 1..660 2649 77.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18318-PA 663 GG18318-PA 1..663 1..660 2888 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24323-PA 672 GH24323-PA 1..291 1..289 1295 82.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-PB 660 CG3002-PB 1..660 1..660 3326 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14803-PA 674 GI14803-PA 1..674 1..660 2064 63.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20223-PA 671 GL20223-PA 1..671 1..660 2446 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15580-PA 675 GA15580-PA 1..675 1..660 2479 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11378-PA 653 GM11378-PA 1..653 1..660 2953 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19468-PA 663 GJ19468-PA 1..663 1..660 2215 67.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25389-PA 708 GK25389-PA 3..708 2..660 2338 66.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17800-PA 663 GE17800-PA 1..663 1..660 2922 90.9 Plus

LD41311.hyp Sequence

Translation from 96 to 2078

> LD41311.hyp
MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA
KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK
GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA
VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA
QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH
LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP
TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN
AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT
EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE
KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL
SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ
LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT
DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES
IVAKGIDYVD*

LD41311.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-PB 660 CG3002-PB 1..660 1..660 3326 100 Plus