BDGP Sequence Production Resources |
Search the DGRC for LD41311
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 413 |
Well: | 11 |
Vector: | pOT2 |
Associated Gene/Transcript | Gga-RB |
Protein status: | LD41311.pep: gold |
Preliminary Size: | 2302 |
Sequenced Size: | 2372 |
Gene | Date | Evidence |
---|---|---|
CG3002 | 2001-09-19 | Blastp of sequenced clone |
CG3002 | 2003-01-01 | Sim4 clustering to Release 3 |
Gga | 2008-04-29 | Release 5.5 accounting |
Gga | 2008-08-15 | Release 5.9 accounting |
Gga | 2008-12-18 | 5.12 accounting |
2372 bp (2372 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058693
> LD41311.complete CGATAGTGTCGACGGAAGAACAACAACAATATGTCTGATGTTCGAAATCA ACGCAAATATTATTTATCCCCCAGTTAATATAATTGAGCCCGCACAATGA CAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGAGCAACAAATCCG GCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTGCATTGTGGTCAA AAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGATTGTGGCCAAGG TGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATTTCGCTGCTGGAG GAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGAGGCGTCCAAATT CCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGAAGTACAAGGGCG CCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAGTGCCTACTGCTG TGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGATGCCTACGACAT GTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGGAGGCGGCGGTGG CCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCCATGTTCGCCAAG CTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGCCAATCTACTGCT GCAGTATCGGATGGCACAGGAGGCGCGTCGCAACGATCTGCTGGCCCAGC ATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGCAGCTGCTCAACCAA ATGCTGGACACCTACGATCCCGCCAACCAGGACGTCAGCGAAACACTGCA CGAGCTATACAAGAGCTGCAAGAAGCACAAGCCCATCTTTCAGCATCTGC CGCAGCTGCTGGACGATTCCGATGCGCAGCTTGTAGCTGACACTCTGGAT GCCAATTGCGCTCTACTGGCCACCATGCAGCGCTACAAGCTTCTGGTGCC ATCGCCCACAAGGAGCACCGCTGCTGCCTTGACCACGAGTGCTCCAACAG TAGCTAGTTCAGTGAAGTCGACGGCCAGCTCGACCACAGCCACCACTAGC TCCAATAACGCCCAGTTGCTGAACGAACTGCTCGGCGATTTGCTCATCGA CGGAAGCAATAAAGCTGCAACTACAGCCACCACAAGCCTACCAAATGCCG CGGCTAGCGGTTCGAATCCGCTGGCCGATTTAAGTGACATCTTTAGCAGC GCTCTGGCCGAAAGCGAAGCGAAGCAGCAGAGTCAGCCATTCCAGAATGC AACCACGCTGCTGGAGCCGCAGGTCATTAGTCAGGGCACCACAACCGAGG CTTTGGCCAATGGCAATGGAGGCAGCGCCAGCAAAGTGCCGGAAACAATC AGAAAGATGCCGCAAATCGATATGCTCAGCGAGGAGCTGTTCCAGCAGAT CCTGCCCACCCAGGATCGGATGCCCAGCTTCAAGCGGGATCCCGAGAAGA TCACGCTAAACGACTTGGCACGCGAACGAATGCACATAAAGGCGCCAGAG GAGCCAACGACTGCTAATGACCCAGCTTCTGATAGTGCTCCTGCTATTGC CACTGCCACAGCTACTGTTGATTCCATAGACGATGTTCCTTTACTCAGCG ATGATGTGGAAAAGAAGGATGAAGCCGTCGTGGCTCCAGTGACAGTTGTA CCGCCGGCCAAGCCGCTAAGCGAAATCAATGTGGAACTGGACAATATACA GGCCACCGGGGAGCAGCGCATCGTTCTCGACGACGACGACATGCAGCTCA GTCTGAACTTCACCAGCGATCGGCCCGGCCATCGTGTGTCGGTGATTGTG ATATCGGCTCAGAACAAGAGTCGCCAGCCAGTGCGCGACTTTCAGTTCGA GGCCAGCGTGAAGAAGCCCTGCAAGGTGCGCCTGTTGACGCCGACGGACA GCCAAATGCCGCCGCACAAGCCCTTCCGCCCGGCCACGCCCATCAACCAG GTGATGCTCCTGCTAAATCCGACAGGCAAGGCCGTGGACGTAACATGCAT TGTGGGCTACAAGCTGGGCGACGATCCGGATCCCATCAAGGAATCGATTG TGGCCAAAGGCATTGACTATGTGGACTAAAATACCCCGACATATAAGTAT CACCCGCTCCCGTCCACTGAAAGCGCAGGAGGAAAATGAAAAGAACGAAA GACAGTCAATTTTCCCGCATCTATGTTGTGCTCCCCATTATCTTAAAGAT ACTTTTGGTTTTTCAATTTCTGTATTGTATGTGTATGTACGCTGATAAGA TTTTTATTCAAATTGCATTTTGCATACAAACGATTTAGTCGTAATATAAT TATGTATCAAAGGTTTATAAATTATGAAAAAGTCGCTACAAAAGCCAAAA AAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gga-RB | 2488 | Gga-RB | 128..2475 | 1..2348 | 11740 | 100 | Plus |
Gga.a | 2316 | Gga.a | 259..2316 | 291..2348 | 10290 | 100 | Plus |
Gga.b | 2200 | Gga.b | 143..2200 | 291..2348 | 10290 | 100 | Plus |
Gga.a | 2316 | Gga.a | 11..263 | 1..253 | 1250 | 99.6 | Plus |
Gga.b | 2200 | Gga.b | 11..143 | 1..133 | 665 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 9494458..9495439 | 885..1866 | 4910 | 100 | Plus |
chrX | 22417052 | chrX | 9493795..9494390 | 291..886 | 2980 | 100 | Plus |
chrX | 22417052 | chrX | 9495514..9495995 | 1865..2346 | 2410 | 100 | Plus |
chrX | 22417052 | chrX | 9492968..9493126 | 133..291 | 795 | 100 | Plus |
chrX | 22417052 | chrX | 9492759..9492891 | 1..133 | 665 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 9602743..9603724 | 885..1866 | 4910 | 100 | Plus |
X | 23542271 | X | 9602080..9602675 | 291..886 | 2980 | 100 | Plus |
X | 23542271 | X | 9603799..9604282 | 1865..2348 | 2420 | 100 | Plus |
X | 23542271 | X | 9601253..9601411 | 133..291 | 795 | 100 | Plus |
X | 23542271 | X | 9601044..9601176 | 1..133 | 665 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 9610841..9611822 | 885..1866 | 4910 | 100 | Plus |
X | 23527363 | X | 9610178..9610773 | 291..886 | 2980 | 100 | Plus |
X | 23527363 | X | 9611897..9612380 | 1865..2348 | 2420 | 100 | Plus |
X | 23527363 | X | 9609351..9609509 | 133..291 | 795 | 100 | Plus |
X | 23527363 | X | 9609142..9609274 | 1..133 | 665 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 9492759..9492891 | 1..133 | 100 | -> | Plus |
chrX | 9492969..9493126 | 134..291 | 100 | -> | Plus |
chrX | 9493796..9494390 | 292..886 | 100 | -> | Plus |
chrX | 9494460..9495439 | 887..1866 | 100 | -> | Plus |
chrX | 9495516..9495995 | 1867..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 1..1983 | 97..2079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 1..1983 | 97..2079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 1..1983 | 97..2079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 1..1983 | 97..2079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 1..1983 | 97..2079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 11..2356 | 1..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 11..2356 | 1..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 15..2360 | 1..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 11..2356 | 1..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gga-RB | 15..2360 | 1..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9601254..9601411 | 134..291 | 100 | -> | Plus |
X | 9602081..9602675 | 292..886 | 100 | -> | Plus |
X | 9602745..9603724 | 887..1866 | 100 | -> | Plus |
X | 9603801..9604280 | 1867..2346 | 100 | Plus | |
X | 9601044..9601176 | 1..133 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9601254..9601411 | 134..291 | 100 | -> | Plus |
X | 9602081..9602675 | 292..886 | 100 | -> | Plus |
X | 9602745..9603724 | 887..1866 | 100 | -> | Plus |
X | 9603801..9604280 | 1867..2346 | 100 | Plus | |
X | 9601044..9601176 | 1..133 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9601254..9601411 | 134..291 | 100 | -> | Plus |
X | 9602081..9602675 | 292..886 | 100 | -> | Plus |
X | 9602745..9603724 | 887..1866 | 100 | -> | Plus |
X | 9603801..9604280 | 1867..2346 | 100 | Plus | |
X | 9601044..9601176 | 1..133 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 9495287..9495444 | 134..291 | 100 | -> | Plus |
arm_X | 9495077..9495209 | 1..133 | 100 | -> | Plus |
arm_X | 9496114..9496708 | 292..886 | 100 | -> | Plus |
arm_X | 9496778..9497757 | 887..1866 | 100 | -> | Plus |
arm_X | 9497834..9498313 | 1867..2346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9610179..9610773 | 292..886 | 100 | -> | Plus |
X | 9610843..9611822 | 887..1866 | 100 | -> | Plus |
X | 9611899..9612378 | 1867..2346 | 100 | Plus | |
X | 9609142..9609274 | 1..133 | 100 | -> | Plus |
X | 9609352..9609509 | 134..291 | 100 | -> | Plus |
Translation from 96 to 2078
> LD41311.pep MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES IVAKGIDYVD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22567-PA | 671 | GF22567-PA | 1..671 | 1..660 | 2649 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18318-PA | 663 | GG18318-PA | 1..663 | 1..660 | 2888 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24323-PA | 672 | GH24323-PA | 1..291 | 1..289 | 1295 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gga-PB | 660 | CG3002-PB | 1..660 | 1..660 | 3326 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14803-PA | 674 | GI14803-PA | 1..674 | 1..660 | 2064 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20223-PA | 671 | GL20223-PA | 1..671 | 1..660 | 2446 | 73.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15580-PA | 675 | GA15580-PA | 1..675 | 1..660 | 2479 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11378-PA | 653 | GM11378-PA | 1..653 | 1..660 | 2953 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19468-PA | 663 | GJ19468-PA | 1..663 | 1..660 | 2215 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25389-PA | 708 | GK25389-PA | 3..708 | 2..660 | 2338 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17800-PA | 663 | GE17800-PA | 1..663 | 1..660 | 2922 | 90.9 | Plus |
Translation from 96 to 2078
> LD41311.hyp MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES IVAKGIDYVD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gga-PB | 660 | CG3002-PB | 1..660 | 1..660 | 3326 | 100 | Plus |