Clone LD41381 Report

Search the DGRC for LD41381

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:413
Well:81
Vector:pOT2
Associated Gene/TranscriptCG12795-RB
Protein status:LD41381.pep: gold
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12795 2008-04-29 Release 5.5 accounting
CG12795 2008-04-29 Picked prior to 5.5
CG12795 2008-08-15 Release 5.9 accounting
CG12795 2008-12-18 5.12 accounting

Clone Sequence Records

LD41381.complete Sequence

1210 bp assembled on 2007-09-25

GenBank Submission: BT030995

> LD41381.complete
TCATTTACAATCTCATTTGTTTCTCGAAGTTTTCCCAATAACAACCATAT
ATAGCATCCGAAGCAACGTGTCTGCTTAGTGTAGAGGAAAACAGTAACCG
GAGAAGTACAATCATGGAATTTCCACACTTGGGACAGCACTGCAGTGAGG
CAACGTGCAACAGATTGGATTTTCTGCCCGTTAAGTGCGACTCGTGCGAC
AAGGTCTTCTGCGCCTCTCACTACAGCTACGACCGCCACAGCTGTCCAGG
AGCCTACAAGAAGAACGTTCAGGTGCCCGTCTGCCCACTGTGTCGGGAGC
CCGTGCCCACGCCACCCGGAGTGGAGCCCGATGTCACTGTTGGCCAGCAC
ATTGACCAGCAGTGCAAATCGGAGAGCAAGAAGATCTACACCAATCGCTG
CAATGCCAAGGGCTGCAAGCGAAAGGAGCTCATCCCGGTGACCTGCTCGC
AGTGTCGCTTGAACTTTTGCCTGCGTCATCGACACACCAGCGACCACGAC
TGCAAGCCAGTGCCTGCATCTTCGACAACGTCCAGCCGTGGGGGATTTCA
GTCCATATTCAAGACCTCCTCGGACTCACGATCCATGGCTGCCCAGGCGG
CCGAGAGAAGGCAGAACAGAAGGCCCGCGAGCAATAGCATCAGCAATACC
AATTCCAGACCTCGACCTGTGCAGGCCACACAAGTACAAAACATACAGGG
CAATATGAGCGAAGACGAGGCCCTAGCACGAGCACTAGCCTTATCCATTA
TGGAGCAGGATGACGCGGCGGAAAGCAACCGTCAAGCTCCGGCACCAAGC
AACGCCCAGCAAGTGGCTGTTGGCGGTGGTGGCAATCAGCAGGGAAATGG
CAAGGACAAGTGCCTGCTGTCCTAGGTCCCAGGAGGCAGCGCAGCGAGCT
CTCAACATATCCATCACTTGACCAGCAGCTAGAAATCTGCCCAATTATTA
GATGTTAATGAAACTCCGTTATTGTAATTTGTTGGTAATTTACTTCGACT
TCGTCACATTCTTCGTGGTTTAGCAAAAATAAATTAATGTTAAGTCTACA
TTTGGAAAGCGTAGATAGTTTTTAACACGGATCTTTAAAGGGAAATAAGG
GAATCGACCCTATTGCGAACAGATCTTAATCAGATAAATATGATACAAGG
CTTAGCTACATAAATAGATACACGATTATAGTTATACAGAAAAAAAAAAA
AAAAAAAAAA

LD41381.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12795-RB 1331 CG12795-RB 97..1286 1..1190 5950 100 Plus
nc_704.a 447 nc_704.a 147..447 168..468 1505 100 Plus
Cog3-RA 3097 Cog3-RA 2847..3097 1190..940 1255 100 Minus
nc_704.a 447 nc_704.a 1..131 38..168 655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3452312..3452851 168..707 2700 100 Plus
chr2L 23010047 chr2L 3453001..3453483 707..1189 2415 100 Plus
chr2L 23010047 chr2L 3452077..3452244 1..168 825 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3452739..3453278 168..707 2700 100 Plus
2L 23513712 2L 3453428..3453911 707..1190 2420 100 Plus
2L 23513712 2L 3452504..3452671 1..168 840 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3452739..3453278 168..707 2700 100 Plus
2L 23513712 2L 3453428..3453911 707..1190 2420 100 Plus
2L 23513712 2L 3452504..3452671 1..168 840 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:36:27 has no hits.

LD41381.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3452077..3452244 1..168 99 -> Plus
chr2L 3452313..3452851 169..707 100 -> Plus
chr2L 3453002..3453483 708..1189 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:58 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 1..762 114..875 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 1..762 114..875 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:18 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 1..762 114..875 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:47 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 1..762 114..875 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:57:28 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 54..928 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:58 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 54..928 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 39..1072 1..1034 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:18 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 54..928 1..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:47 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12795-RB 39..1072 1..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3452504..3452671 1..168 100 -> Plus
2L 3452740..3453278 169..707 100 -> Plus
2L 3453429..3453910 708..1189 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3452504..3452671 1..168 100 -> Plus
2L 3452740..3453278 169..707 100 -> Plus
2L 3453429..3453910 708..1189 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3452504..3452671 1..168 100 -> Plus
2L 3452740..3453278 169..707 100 -> Plus
2L 3453429..3453910 708..1189 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:13 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3452504..3452671 1..168 100 -> Plus
arm_2L 3452740..3453278 169..707 100 -> Plus
arm_2L 3453429..3453910 708..1189 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:05 Download gff for LD41381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3452740..3453278 169..707 100 -> Plus
2L 3453429..3453910 708..1189 100   Plus
2L 3452504..3452671 1..168 100 -> Plus

LD41381.pep Sequence

Translation from 113 to 874

> LD41381.pep
MEFPHLGQHCSEATCNRLDFLPVKCDSCDKVFCASHYSYDRHSCPGAYKK
NVQVPVCPLCREPVPTPPGVEPDVTVGQHIDQQCKSESKKIYTNRCNAKG
CKRKELIPVTCSQCRLNFCLRHRHTSDHDCKPVPASSTTSSRGGFQSIFK
TSSDSRSMAAQAAERRQNRRPASNSISNTNSRPRPVQATQVQNIQGNMSE
DEALARALALSIMEQDDAAESNRQAPAPSNAQQVAVGGGGNQQGNGKDKC
LLS*

LD41381.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21585-PA 251 GF21585-PA 1..251 1..253 1048 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24943-PA 253 GG24943-PA 1..253 1..253 1187 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11582-PA 260 GH11582-PA 1..259 1..252 873 65 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12795-PB 253 CG12795-PB 1..253 1..253 1363 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17152-PA 260 GI17152-PA 1..260 1..253 943 70.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19243-PA 253 GL19243-PA 1..253 1..253 1028 77.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25886-PA 253 GA25886-PA 1..253 1..253 1021 77.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11138-PA 253 GM11138-PA 1..253 1..253 1293 95.3 Plus
Dsec\GM11085-PA 217 GM11085-PA 1..203 1..203 1020 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23232-PA 253 GD23232-PA 1..253 1..253 1230 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17656-PA 260 GJ17656-PA 1..260 1..253 948 71.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24154-PA 253 GK24154-PA 1..253 1..253 1030 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18234-PA 252 GE18234-PA 1..252 1..253 1186 90.9 Plus

LD41381.hyp Sequence

Translation from 113 to 874

> LD41381.hyp
MEFPHLGQHCSEATCNRLDFLPVKCDSCDKVFCASHYSYDRHSCPGAYKK
NVQVPVCPLCREPVPTPPGVEPDVTVGQHIDQQCKSESKKIYTNRCNAKG
CKRKELIPVTCSQCRLNFCLRHRHTSDHDCKPVPASSTTSSRGGFQSIFK
TSSDSRSMAAQAAERRQNRRPASNSISNTNSRPRPVQATQVQNIQGNMSE
DEALARALALSIMEQDDAAESNRQAPAPSNAQQVAVGGGGNQQGNGKDKC
LLS*

LD41381.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12795-PB 253 CG12795-PB 1..253 1..253 1363 100 Plus