BDGP Sequence Production Resources |
Search the DGRC for LD41384
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 413 |
Well: | 84 |
Vector: | pOT2 |
Associated Gene/Transcript | Mkrn1-RA |
Protein status: | LD41384.pep: gold |
Preliminary Size: | 2184 |
Sequenced Size: | 2237 |
Gene | Date | Evidence |
---|---|---|
CG7184 | 2001-01-01 | Release 2 assignment |
CG7184 | 2001-09-19 | Blastp of sequenced clone |
CG7184 | 2003-01-01 | Sim4 clustering to Release 3 |
Mkrn1 | 2008-04-29 | Release 5.5 accounting |
Mkrn1 | 2008-08-15 | Release 5.9 accounting |
Mkrn1 | 2008-12-18 | 5.12 accounting |
2237 bp (2237 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058694
> LD41384.complete TCACACTGCGGAAAAAAATTGTGAATGTGATCCAAGGTGCATAAAACGAC AAAGTAAGAAACTGTGAGTGCTGTGGACATTAAACCAGCTTCGATTTCAA GAAGTCGCACTCCCTGAAAGCAAGCAGGTCATCAGGTCCAGACTTGTCAG TGATTTGAAAACCCGAAAACCCTTTTGCGATCATCGTAGCGAAATGAGTG CCGTCACCAGCAGCGATACAGCCATCAGCGGCATGGCTCTTGGCCGGAGC CAGACCATCTGCCGCTACTACGTGCGCGGCATCTGCCGCTTTGGGGAACT TTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTCCCGAGTGCGAGGAGC AGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACAAGCAGCAGCAGCACC ATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCAGAGGAACTGGGCGAA CGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATACTGCCCACGAACAAA GCGAATTTGAGACCACTGTGGACCCTGAGGCGGTGATGGAGGCGCAGGCT GGAGCCAGCTACGATACATTAGCCCCGGGTGTCTCCTGGGCCGAAGTAGT GGGCGGACCTTCGTCTCTGAACAAAGAGGACTATGGCGAGGAGAACAGTT CCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATTCACATGGAGCTGTGC GAAATGTGCGACCAGTATTGCCTGCATCCCACGGATCAAGTTCAGCGGAG GAGTCACAACCGTGAGTGCCTTCAGCAGCACGAGCAGGCCATGGAGCTGT CCTTCGCCATTGCCAGATCCAAGGACAAGACGTGCGGCATCTGCTTTGAC ACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCTTCGGCATTCTCCCCAA CTGCAACCACATATTCTGCTTGGAGTGCATTCGCACATGGCGTCAGGCCA AACAGTTTGAGAACAAAATAACGCGAGCTTGCCCCGAATGTCGCGTGTGC TCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGGAGACCAAGGAGGAAAA GGACAAATTGCTCAACGATTACCGCGCCGCTTTGGGAGCAAAGGACTGCA AATACTTTAAAAAAGGAGAGGGCAAGTGCCCCTTTGGTAACAAGTGTTTC TACAAGCACGCTCTGCCCAACGGAGATATCGTCGATGTGGGTTTGCCGAA GCGCACCCGAAAGTTACAGAGCCAGAATGAAATAATCGATTTACTTGATA TATATCTCTGGGACTACGTAGATCGGCGAGATTATCATTGGCTGGAGATG ATTTCAAGTGATATTACTAGTTCCGAAAGTTCAGATTACTCGGATGAAGA CTAAGCTTCTGAAGCAGAAGGAAACAAAAAAAAGAAACATCAGCCCAAAA GCATTAAAATTTGGATGTAAAGTCCCAGGAACACGTAAACAATATTCACA CACGATATATATAAACGATACTGAGCCAAATATCGAATGCGAAATTAAAC AAAATAATGTATTTGGGTACCAAATTTAGGTTACATAATATTTATTCTCC ACTTAATGCAACGAAATTTACAGCAACTTTCCGTACTTGTATTGAATTAA ATTACATTTAATACCTTTAAAATGTGGTTTTACCAAAACCAGAAGGAACC TTGATATATCATTAAATTTCAATACACAACTTTAAGAGTTAAGCAGGAAA CAGTACATTTTCAAAACTGGTGACTGTAAATTATGGCTTTCAGACTGAAT TGTAAAGATAAAAATGCATACATTCTTTAATCGGTTTTCTACTCATTTTT TGAAGTTTAACAACTACAACTAAGTGAAACGCACACACCAATCCACATGA GCACATAAATCTGGATACTTGAATACATTCAATATCGAATGAATCTATGT ATCAAACCGAGCAGAAACTATTCCCTTTCGCCGATAAATAAAATTTTTGT TATTGTTATGAGCCTTTGTGTTAAAGTATTACTGTTGCATACCTATAATT CAGTATAATTGTAATTGTTGGCCACAAGCGTAATACCCAATCCACTGCAA ATATGATATGTATAACATCTTTACTGTATATGAATTTTAAGTTTATACTT TCGAAATGTACCTCTTTAAAATGTTTTATTTTTACTGATACAAATGTAAT GTGTTGTCCATGGGAAAAGCAACAATTAAATATACAAAGGGAACTAGCAT ATGAACCCAAAATGTTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21519541..21520508 | 2217..1250 | 4840 | 100 | Minus |
chr3L | 24539361 | chr3L | 21521274..21522124 | 975..125 | 4255 | 100 | Minus |
chr3L | 24539361 | chr3L | 21520693..21520967 | 1249..975 | 1375 | 100 | Minus |
chr3L | 24539361 | chr3L | 18712123..18712510 | 1199..812 | 860 | 81.4 | Minus |
chrX | 22417052 | chrX | 14667502..14667977 | 684..1159 | 745 | 77.1 | Plus |
chr3L | 24539361 | chr3L | 21522500..21522628 | 129..1 | 645 | 100 | Minus |
chrX | 22417052 | chrX | 14665859..14666227 | 791..1159 | 495 | 75.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21530602..21531573 | 2221..1250 | 4860 | 100 | Minus |
3L | 28110227 | 3L | 21532339..21533189 | 975..125 | 4255 | 100 | Minus |
3L | 28110227 | 3L | 21531758..21532032 | 1249..975 | 1375 | 100 | Minus |
3L | 28110227 | 3L | 18722464..18722851 | 1199..812 | 860 | 81.4 | Minus |
X | 23542271 | X | 14777206..14777681 | 684..1159 | 745 | 77.1 | Plus |
3L | 28110227 | 3L | 21533565..21533693 | 129..1 | 645 | 100 | Minus |
X | 23542271 | X | 14775563..14775931 | 791..1159 | 495 | 75.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21523702..21524673 | 2221..1250 | 4860 | 100 | Minus |
3L | 28103327 | 3L | 21525439..21526289 | 975..125 | 4255 | 100 | Minus |
3L | 28103327 | 3L | 21524858..21525132 | 1249..975 | 1375 | 100 | Minus |
3L | 28103327 | 3L | 18715564..18715951 | 1199..812 | 860 | 81.4 | Minus |
X | 23527363 | X | 14785375..14785727 | 755..1107 | 655 | 79 | Plus |
3L | 28103327 | 3L | 21526665..21526793 | 129..1 | 645 | 100 | Minus |
X | 23527363 | X | 14783751..14783977 | 881..1107 | 415 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2665..2987 | 1630..1945 | 129 | 55.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21519541..21520508 | 1250..2217 | 100 | <- | Minus |
chr3L | 21520693..21520966 | 976..1249 | 100 | <- | Minus |
chr3L | 21521274..21522121 | 128..975 | 100 | <- | Minus |
chr3L | 21522502..21522628 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RB | 1..1161 | 194..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RB | 1..1161 | 194..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 1..1161 | 194..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RB | 1..1161 | 194..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 1..1161 | 194..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 31..2247 | 1..2217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 31..2247 | 1..2217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 21..2237 | 1..2217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 31..2247 | 1..2217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkrn1-RA | 21..2237 | 1..2217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21530606..21531573 | 1250..2217 | 100 | <- | Minus |
3L | 21531758..21532031 | 976..1249 | 100 | <- | Minus |
3L | 21532339..21533186 | 128..975 | 100 | <- | Minus |
3L | 21533567..21533693 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21530606..21531573 | 1250..2217 | 100 | <- | Minus |
3L | 21531758..21532031 | 976..1249 | 100 | <- | Minus |
3L | 21532339..21533186 | 128..975 | 100 | <- | Minus |
3L | 21533567..21533693 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21530606..21531573 | 1250..2217 | 100 | <- | Minus |
3L | 21531758..21532031 | 976..1249 | 100 | <- | Minus |
3L | 21532339..21533186 | 128..975 | 100 | <- | Minus |
3L | 21533567..21533693 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21523706..21524673 | 1250..2217 | 100 | <- | Minus |
arm_3L | 21524858..21525131 | 976..1249 | 100 | <- | Minus |
arm_3L | 21525439..21526286 | 128..975 | 100 | <- | Minus |
arm_3L | 21526667..21526793 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21523706..21524673 | 1250..2217 | 100 | <- | Minus |
3L | 21524858..21525131 | 976..1249 | 100 | <- | Minus |
3L | 21525439..21526286 | 128..975 | 100 | <- | Minus |
3L | 21526667..21526793 | 1..127 | 100 | Minus |
Translation from 193 to 1353
> LD41384.pep MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10705-PA | 396 | GF10705-PA | 1..396 | 1..386 | 1490 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13225-PA | 378 | GG13225-PA | 1..362 | 1..370 | 1706 | 89.2 | Plus |
Dere\GG17851-PA | 290 | GG17851-PA | 1..273 | 14..322 | 857 | 53.5 | Plus |
Dere\GG15726-PA | 285 | GG15726-PA | 8..243 | 51..356 | 652 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14787-PA | 386 | GH14787-PA | 1..386 | 1..386 | 1372 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mkrn1-PC | 386 | CG7184-PC | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PB | 386 | CG7184-PB | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PA | 386 | CG7184-PA | 1..386 | 1..386 | 2092 | 100 | Plus |
CG5347-PA | 285 | CG5347-PA | 1..268 | 14..322 | 901 | 56.6 | Plus |
CG12477-PA | 265 | CG12477-PA | 91..263 | 205..384 | 544 | 54.4 | Plus |
CG5334-PA | 210 | CG5334-PA | 67..197 | 198..328 | 518 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11841-PA | 391 | GI11841-PA | 1..391 | 1..386 | 1410 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11888-PA | 185 | GL11888-PA | 1..185 | 200..386 | 936 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20164-PA | 367 | GA20164-PA | 1..367 | 1..386 | 1501 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22131-PA | 386 | GM22131-PA | 1..386 | 1..386 | 2023 | 96.4 | Plus |
Dsec\GM12045-PA | 289 | GM12045-PA | 1..272 | 14..322 | 846 | 53.7 | Plus |
Dsec\GM14923-PA | 266 | GM14923-PA | 13..241 | 56..355 | 561 | 42.3 | Plus |
Dsec\GM12044-PA | 212 | GM12044-PA | 65..189 | 198..322 | 473 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12110-PA | 386 | GD12110-PA | 1..386 | 1..386 | 2023 | 96.4 | Plus |
Dsim\GD12329-PA | 259 | GD12329-PA | 88..241 | 205..358 | 566 | 62.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13540-PA | 390 | GJ13540-PA | 1..390 | 1..386 | 1436 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20382-PA | 394 | GK20382-PA | 6..394 | 3..386 | 1478 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22322-PA | 382 | GE22322-PA | 1..366 | 1..370 | 1836 | 93.8 | Plus |
Dyak\GE17153-PA | 293 | GE17153-PA | 1..281 | 14..327 | 878 | 53 | Plus |
Dyak\GE22057-PA | 269 | GE22057-PA | 20..252 | 74..358 | 621 | 47.8 | Plus |
Dyak\GE22320-PA | 82 | GE22320-PA | 1..63 | 1..63 | 327 | 96.8 | Plus |
Translation from 193 to 1353
> LD41384.hyp MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mkrn1-PC | 386 | CG7184-PC | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PB | 386 | CG7184-PB | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PA | 386 | CG7184-PA | 1..386 | 1..386 | 2092 | 100 | Plus |
CG5347-PA | 285 | CG5347-PA | 1..268 | 14..322 | 901 | 56.6 | Plus |
CG12477-PA | 265 | CG12477-PA | 91..263 | 205..384 | 544 | 54.4 | Plus |