Clone LD41384 Report

Search the DGRC for LD41384

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:413
Well:84
Vector:pOT2
Associated Gene/TranscriptMkrn1-RA
Protein status:LD41384.pep: gold
Preliminary Size:2184
Sequenced Size:2237

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7184 2001-01-01 Release 2 assignment
CG7184 2001-09-19 Blastp of sequenced clone
CG7184 2003-01-01 Sim4 clustering to Release 3
Mkrn1 2008-04-29 Release 5.5 accounting
Mkrn1 2008-08-15 Release 5.9 accounting
Mkrn1 2008-12-18 5.12 accounting

Clone Sequence Records

LD41384.complete Sequence

2237 bp (2237 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058694

> LD41384.complete
TCACACTGCGGAAAAAAATTGTGAATGTGATCCAAGGTGCATAAAACGAC
AAAGTAAGAAACTGTGAGTGCTGTGGACATTAAACCAGCTTCGATTTCAA
GAAGTCGCACTCCCTGAAAGCAAGCAGGTCATCAGGTCCAGACTTGTCAG
TGATTTGAAAACCCGAAAACCCTTTTGCGATCATCGTAGCGAAATGAGTG
CCGTCACCAGCAGCGATACAGCCATCAGCGGCATGGCTCTTGGCCGGAGC
CAGACCATCTGCCGCTACTACGTGCGCGGCATCTGCCGCTTTGGGGAACT
TTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTCCCGAGTGCGAGGAGC
AGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACAAGCAGCAGCAGCACC
ATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCAGAGGAACTGGGCGAA
CGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATACTGCCCACGAACAAA
GCGAATTTGAGACCACTGTGGACCCTGAGGCGGTGATGGAGGCGCAGGCT
GGAGCCAGCTACGATACATTAGCCCCGGGTGTCTCCTGGGCCGAAGTAGT
GGGCGGACCTTCGTCTCTGAACAAAGAGGACTATGGCGAGGAGAACAGTT
CCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATTCACATGGAGCTGTGC
GAAATGTGCGACCAGTATTGCCTGCATCCCACGGATCAAGTTCAGCGGAG
GAGTCACAACCGTGAGTGCCTTCAGCAGCACGAGCAGGCCATGGAGCTGT
CCTTCGCCATTGCCAGATCCAAGGACAAGACGTGCGGCATCTGCTTTGAC
ACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCTTCGGCATTCTCCCCAA
CTGCAACCACATATTCTGCTTGGAGTGCATTCGCACATGGCGTCAGGCCA
AACAGTTTGAGAACAAAATAACGCGAGCTTGCCCCGAATGTCGCGTGTGC
TCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGGAGACCAAGGAGGAAAA
GGACAAATTGCTCAACGATTACCGCGCCGCTTTGGGAGCAAAGGACTGCA
AATACTTTAAAAAAGGAGAGGGCAAGTGCCCCTTTGGTAACAAGTGTTTC
TACAAGCACGCTCTGCCCAACGGAGATATCGTCGATGTGGGTTTGCCGAA
GCGCACCCGAAAGTTACAGAGCCAGAATGAAATAATCGATTTACTTGATA
TATATCTCTGGGACTACGTAGATCGGCGAGATTATCATTGGCTGGAGATG
ATTTCAAGTGATATTACTAGTTCCGAAAGTTCAGATTACTCGGATGAAGA
CTAAGCTTCTGAAGCAGAAGGAAACAAAAAAAAGAAACATCAGCCCAAAA
GCATTAAAATTTGGATGTAAAGTCCCAGGAACACGTAAACAATATTCACA
CACGATATATATAAACGATACTGAGCCAAATATCGAATGCGAAATTAAAC
AAAATAATGTATTTGGGTACCAAATTTAGGTTACATAATATTTATTCTCC
ACTTAATGCAACGAAATTTACAGCAACTTTCCGTACTTGTATTGAATTAA
ATTACATTTAATACCTTTAAAATGTGGTTTTACCAAAACCAGAAGGAACC
TTGATATATCATTAAATTTCAATACACAACTTTAAGAGTTAAGCAGGAAA
CAGTACATTTTCAAAACTGGTGACTGTAAATTATGGCTTTCAGACTGAAT
TGTAAAGATAAAAATGCATACATTCTTTAATCGGTTTTCTACTCATTTTT
TGAAGTTTAACAACTACAACTAAGTGAAACGCACACACCAATCCACATGA
GCACATAAATCTGGATACTTGAATACATTCAATATCGAATGAATCTATGT
ATCAAACCGAGCAGAAACTATTCCCTTTCGCCGATAAATAAAATTTTTGT
TATTGTTATGAGCCTTTGTGTTAAAGTATTACTGTTGCATACCTATAATT
CAGTATAATTGTAATTGTTGGCCACAAGCGTAATACCCAATCCACTGCAA
ATATGATATGTATAACATCTTTACTGTATATGAATTTTAAGTTTATACTT
TCGAAATGTACCTCTTTAAAATGTTTTATTTTTACTGATACAAATGTAAT
GTGTTGTCCATGGGAAAAGCAACAATTAAATATACAAAGGGAACTAGCAT
ATGAACCCAAAATGTTTAAAAAAAAAAAAAAAAAAAA

LD41384.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1.b 3073 Mkrn1.b 95..2315 1..2221 11105 100 Plus
Mkrn1-RA 2393 Mkrn1-RA 131..2351 1..2221 11105 100 Plus
Mkrn1.a 2270 Mkrn1.a 23..2235 1..2221 10960 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21519541..21520508 2217..1250 4840 100 Minus
chr3L 24539361 chr3L 21521274..21522124 975..125 4255 100 Minus
chr3L 24539361 chr3L 21520693..21520967 1249..975 1375 100 Minus
chr3L 24539361 chr3L 18712123..18712510 1199..812 860 81.4 Minus
chrX 22417052 chrX 14667502..14667977 684..1159 745 77.1 Plus
chr3L 24539361 chr3L 21522500..21522628 129..1 645 100 Minus
chrX 22417052 chrX 14665859..14666227 791..1159 495 75.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21530602..21531573 2221..1250 4860 100 Minus
3L 28110227 3L 21532339..21533189 975..125 4255 100 Minus
3L 28110227 3L 21531758..21532032 1249..975 1375 100 Minus
3L 28110227 3L 18722464..18722851 1199..812 860 81.4 Minus
X 23542271 X 14777206..14777681 684..1159 745 77.1 Plus
3L 28110227 3L 21533565..21533693 129..1 645 100 Minus
X 23542271 X 14775563..14775931 791..1159 495 75.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21523702..21524673 2221..1250 4860 100 Minus
3L 28103327 3L 21525439..21526289 975..125 4255 100 Minus
3L 28103327 3L 21524858..21525132 1249..975 1375 100 Minus
3L 28103327 3L 18715564..18715951 1199..812 860 81.4 Minus
X 23527363 X 14785375..14785727 755..1107 655 79 Plus
3L 28103327 3L 21526665..21526793 129..1 645 100 Minus
X 23527363 X 14783751..14783977 881..1107 415 78.8 Plus
Blast to na_te.dros performed 2019-03-15 13:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2665..2987 1630..1945 129 55.6 Plus

LD41384.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:48:55 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21519541..21520508 1250..2217 100 <- Minus
chr3L 21520693..21520966 976..1249 100 <- Minus
chr3L 21521274..21522121 128..975 100 <- Minus
chr3L 21522502..21522628 1..127 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:46 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 1..1161 194..1354 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:33 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 1..1161 194..1354 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:12:37 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 1..1161 194..1354 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:57 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 1..1161 194..1354 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:41:05 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 1..1161 194..1354 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:42 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 31..2247 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:33 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 31..2247 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:12:37 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 21..2237 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:57 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 31..2247 1..2217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:41:05 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 21..2237 1..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:55 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21530606..21531573 1250..2217 100 <- Minus
3L 21531758..21532031 976..1249 100 <- Minus
3L 21532339..21533186 128..975 100 <- Minus
3L 21533567..21533693 1..127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:55 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21530606..21531573 1250..2217 100 <- Minus
3L 21531758..21532031 976..1249 100 <- Minus
3L 21532339..21533186 128..975 100 <- Minus
3L 21533567..21533693 1..127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:55 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21530606..21531573 1250..2217 100 <- Minus
3L 21531758..21532031 976..1249 100 <- Minus
3L 21532339..21533186 128..975 100 <- Minus
3L 21533567..21533693 1..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:12:37 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21523706..21524673 1250..2217 100 <- Minus
arm_3L 21524858..21525131 976..1249 100 <- Minus
arm_3L 21525439..21526286 128..975 100 <- Minus
arm_3L 21526667..21526793 1..127 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:17 Download gff for LD41384.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21523706..21524673 1250..2217 100 <- Minus
3L 21524858..21525131 976..1249 100 <- Minus
3L 21525439..21526286 128..975 100 <- Minus
3L 21526667..21526793 1..127 100   Minus

LD41384.pep Sequence

Translation from 193 to 1353

> LD41384.pep
MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC
EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH
EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE
NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM
ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR
QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK
DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL
LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED*

LD41384.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10705-PA 396 GF10705-PA 1..396 1..386 1490 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13225-PA 378 GG13225-PA 1..362 1..370 1706 89.2 Plus
Dere\GG17851-PA 290 GG17851-PA 1..273 14..322 857 53.5 Plus
Dere\GG15726-PA 285 GG15726-PA 8..243 51..356 652 49.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14787-PA 386 GH14787-PA 1..386 1..386 1372 66.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-PC 386 CG7184-PC 1..386 1..386 2092 100 Plus
Mkrn1-PB 386 CG7184-PB 1..386 1..386 2092 100 Plus
Mkrn1-PA 386 CG7184-PA 1..386 1..386 2092 100 Plus
CG5347-PA 285 CG5347-PA 1..268 14..322 901 56.6 Plus
CG12477-PA 265 CG12477-PA 91..263 205..384 544 54.4 Plus
CG5334-PA 210 CG5334-PA 67..197 198..328 518 67.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11841-PA 391 GI11841-PA 1..391 1..386 1410 65.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11888-PA 185 GL11888-PA 1..185 200..386 936 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20164-PA 367 GA20164-PA 1..367 1..386 1501 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22131-PA 386 GM22131-PA 1..386 1..386 2023 96.4 Plus
Dsec\GM12045-PA 289 GM12045-PA 1..272 14..322 846 53.7 Plus
Dsec\GM14923-PA 266 GM14923-PA 13..241 56..355 561 42.3 Plus
Dsec\GM12044-PA 212 GM12044-PA 65..189 198..322 473 64.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12110-PA 386 GD12110-PA 1..386 1..386 2023 96.4 Plus
Dsim\GD12329-PA 259 GD12329-PA 88..241 205..358 566 62.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13540-PA 390 GJ13540-PA 1..390 1..386 1436 68 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20382-PA 394 GK20382-PA 6..394 3..386 1478 72.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22322-PA 382 GE22322-PA 1..366 1..370 1836 93.8 Plus
Dyak\GE17153-PA 293 GE17153-PA 1..281 14..327 878 53 Plus
Dyak\GE22057-PA 269 GE22057-PA 20..252 74..358 621 47.8 Plus
Dyak\GE22320-PA 82 GE22320-PA 1..63 1..63 327 96.8 Plus

LD41384.hyp Sequence

Translation from 193 to 1353

> LD41384.hyp
MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC
EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH
EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE
NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM
ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR
QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK
DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL
LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED*

LD41384.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-PC 386 CG7184-PC 1..386 1..386 2092 100 Plus
Mkrn1-PB 386 CG7184-PB 1..386 1..386 2092 100 Plus
Mkrn1-PA 386 CG7184-PA 1..386 1..386 2092 100 Plus
CG5347-PA 285 CG5347-PA 1..268 14..322 901 56.6 Plus
CG12477-PA 265 CG12477-PA 91..263 205..384 544 54.4 Plus