Clone LD41392 Report

Search the DGRC for LD41392

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:413
Well:92
Vector:pOT2
Associated Gene/TranscriptPpox-RA
Protein status:LD41392.pep: gold
Preliminary Size:1796
Sequenced Size:1656

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5796 2001-01-01 Release 2 assignment
CG5796 2001-07-04 Blastp of sequenced clone
CG5796 2003-01-01 Sim4 clustering to Release 3
Ppox 2008-04-29 Release 5.5 accounting
Ppox 2008-08-15 Release 5.9 accounting
Ppox 2008-12-18 5.12 accounting

Clone Sequence Records

LD41392.complete Sequence

1656 bp (1656 high quality bases) assembled on 2001-07-04

GenBank Submission: AY058695

> LD41392.complete
AACGATCGAAGCCGGCATAGATTTTTTCGTCTGCAAACCAGAACTAGTCT
GAATCCTCTAAGGGATTCGGGAGCAACGAGAAGCAGCAGAAGGACCATGA
CGACGGCCGTGCTGGGAGGCGGATTGAGTGGACTATCCGCCGGATACTAC
CTGTTGCGGCGATTCGGGAAGCCGCTGACCATCTACGAGGCCTCGCCCCG
TGTGGGCGGATGGGTGCGGTCGGAGAATCGCAAGGATCGCAACTTCATCT
TCGAGAGCGGACCGCGAACCATACGCCCAGTTGGTGAGCCAGGTGCCAAT
ACGCTAGAATTGGTGGAGGATCTGAAGCTGGAGGTGACTCCCATTCGACG
CAGTCATGTCGCAGCACGCAACCGAATGCTGTATGCCAAGGGACAGCTCT
GCATGCTGCCCAACAGTCCCAAGGGTCTCTTCGGCGTCCTGCCTCCCTTC
ACGAAGCCGCTATACAAAGCGGTTCTTCGCGATCTGTTCACAGCAAGCAA
GAAAGCGAAGCTGGAGGATGAGAGCATCTACAGTTTCGCTGAGCGGCGGT
TTGGTAAGGAGATAGCCGACTACGCCATCAGTCCCATGATCTGCGGTATT
TGCGCCGGTGACGCGCGAGAAATAAGTGTGCGCTTCCTGATGGAGGGGCT
CTTTGAAAAGGAACAGAAGTACGGAGGAGTGCTCAAGGGCACACTCATTT
CCCGCTTTGAGAAGAACAAGACCAAGGACACCAAGGATGGACTATTTGCC
GAAAGACAGCCCAAGCTGTATGCGCAGGCGGTAAAGGAGAAGTGGGCCAT
GTACGGGCTGAAAGGCGGTCTGGAGAACCTACCCAAAACTATGCGAAAGT
ACTTAGGTGAGCGGGATGTGAACGTGCAGCTAAGCAACGAATGCCGGAAC
CTGACCTTCAGCAGCTCCGGGGTTCGAATGAACATCAAGGATGCCGAAGT
TCCGGTGGAGCATGTGGTCAGCTCCCTGCCCGCCTACAAACTCGCGCCCC
TGGTAAAGCAGCAGCATCCCTCGCTGAGCGCCCAACTTTTGAGCATTCCG
TACGTGGATGTGCTGGTAGTGAACATGCAGTTCCCCGGCAAGCTACTCAA
ACAAGACGGCTTTGGATTGCTAGTGCCGCCAGTGGAAAAGTTACCTCTGC
TCGGCGTCATCTTCGACAGCTGCTGCTTCGACATGGGCGAGAACACTGTG
CTTACCGTGATGATGGGTGGCCATTGGTTCGACCAGTGGTTCGGTGATCG
TCCAAGCCCCAAGCAGATTCTTGACTTAGCCACCAGCCATGTGCAGAAAA
TGCTGCAGATACGCGAGGAACCCAAATTCAGTCGAGTGCACACGCTGCAC
AAGTGCATCCCGCAGTACACTGTGGGCCACAAGCGGCGCGTTGAAGCCAT
TCGGAACTACATCAAGACCTACAAACTGCCACTGTCTGTCTGTGGAGCTG
CATACGATGGCGTGGGCATCAACGATGTTATCCTATCCGCCCGGCGACAA
GTGGAAGCCATACCCTTGTCCTAAATCAACCATTCCCTTCTAGCACACCC
TCTTTTCCATTGGTGATTCTGTTGTATTTGCGTAAGCTGGTTTTGTGAAT
AGTAAAGTAGGTCCTTTGTACATAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

LD41392.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ppox-RA 1802 Ppox-RA 31..1657 1..1627 8135 100 Plus
CG31126-RA 701 CG31126-RA 616..701 1627..1542 430 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20483445..20485069 1625..1 8125 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24660195..24661821 1627..1 8135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24401026..24402652 1627..1 8135 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:30:36 has no hits.

LD41392.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:47 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20483445..20485069 1..1625 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:47 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 1..1428 97..1524 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:38 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 1..1428 97..1524 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:40 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 1..1428 97..1524 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:06 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 1..1428 97..1524 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:27 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 1..1428 97..1524 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:57 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 31..1655 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:38 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 31..1655 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:40 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 31..1655 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:06 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 31..1655 1..1625 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:27 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
Ppox-RA 31..1655 1..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:47 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24660197..24661821 1..1625 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:47 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24660197..24661821 1..1625 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:47 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24660197..24661821 1..1625 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:40 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20485919..20487543 1..1625 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:08 Download gff for LD41392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24401028..24402652 1..1625 100   Minus

LD41392.hyp Sequence

Translation from 0 to 1523

> LD41392.hyp
NDRSRHRFFRLQTRTSLNPLRDSGATRSSRRTMTTAVLGGGLSGLSAGYY
LLRRFGKPLTIYEASPRVGGWVRSENRKDRNFIFESGPRTIRPVGEPGAN
TLELVEDLKLEVTPIRRSHVAARNRMLYAKGQLCMLPNSPKGLFGVLPPF
TKPLYKAVLRDLFTASKKAKLEDESIYSFAERRFGKEIADYAISPMICGI
CAGDAREISVRFLMEGLFEKEQKYGGVLKGTLISRFEKNKTKDTKDGLFA
ERQPKLYAQAVKEKWAMYGLKGGLENLPKTMRKYLGERDVNVQLSNECRN
LTFSSSGVRMNIKDAEVPVEHVVSSLPAYKLAPLVKQQHPSLSAQLLSIP
YVDVLVVNMQFPGKLLKQDGFGLLVPPVEKLPLLGVIFDSCCFDMGENTV
LTVMMGGHWFDQWFGDRPSPKQILDLATSHVQKMLQIREEPKFSRVHTLH
KCIPQYTVGHKRRVEAIRNYIKTYKLPLSVCGAAYDGVGINDVILSARRQ
VEAIPLS*

LD41392.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ppox-PA 475 CG5796-PA 1..475 33..507 2469 100 Plus

LD41392.pep Sequence

Translation from 96 to 1523

> LD41392.pep
MTTAVLGGGLSGLSAGYYLLRRFGKPLTIYEASPRVGGWVRSENRKDRNF
IFESGPRTIRPVGEPGANTLELVEDLKLEVTPIRRSHVAARNRMLYAKGQ
LCMLPNSPKGLFGVLPPFTKPLYKAVLRDLFTASKKAKLEDESIYSFAER
RFGKEIADYAISPMICGICAGDAREISVRFLMEGLFEKEQKYGGVLKGTL
ISRFEKNKTKDTKDGLFAERQPKLYAQAVKEKWAMYGLKGGLENLPKTMR
KYLGERDVNVQLSNECRNLTFSSSGVRMNIKDAEVPVEHVVSSLPAYKLA
PLVKQQHPSLSAQLLSIPYVDVLVVNMQFPGKLLKQDGFGLLVPPVEKLP
LLGVIFDSCCFDMGENTVLTVMMGGHWFDQWFGDRPSPKQILDLATSHVQ
KMLQIREEPKFSRVHTLHKCIPQYTVGHKRRVEAIRNYIKTYKLPLSVCG
AAYDGVGINDVILSARRQVEAIPLS*

LD41392.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17757-PA 474 GF17757-PA 1..474 1..475 2143 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12328-PA 475 GG12328-PA 1..475 1..475 2479 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19131-PA 480 GH19131-PA 3..476 2..474 1939 75.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ppox-PA 475 CG5796-PA 1..475 1..475 2469 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23588-PA 478 GI23588-PA 1..473 1..473 1939 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13869-PA 472 GL13869-PA 1..472 1..473 1934 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19136-PA 472 GA19136-PA 1..472 1..473 1960 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23469-PA 475 GM23469-PA 1..475 1..475 2505 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18277-PA 573 GD18277-PA 99..573 1..475 2507 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23564-PA 481 GJ23564-PA 1..474 1..474 1951 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12118-PA 479 GK12118-PA 1..474 1..475 1980 76.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10782-PA 475 GE10782-PA 1..475 1..475 2490 98.1 Plus