Clone LD41395 Report

Search the DGRC for LD41395

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:413
Well:95
Vector:pOT2
Associated Gene/TranscriptMED19-RA
Protein status:LD41395.pep: gold
Preliminary Size:1852
Sequenced Size:1763

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5546 2001-11-29 Blastp of sequenced clone
CG5546 2003-01-01 Sim4 clustering to Release 3
MED19 2008-04-29 Release 5.5 accounting
MED19 2008-08-15 Release 5.9 accounting
MED19 2008-12-18 5.12 accounting

Clone Sequence Records

LD41395.complete Sequence

1763 bp (1763 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069647

> LD41395.complete
TTCGCGGACACAACAAGATGGCGAGACTTGCCCCCGAAATCTGTTAGAAA
ACGCCACAAGAGCAAATAATTAGTTCAGTTTTCGACCAGAAAAGAGTCAG
CCGAAGTGCCGGGCAGACGCGGCGCATTTTGCAGAGTGTGAGCTTGGCCA
GCGTTGCCCGAGAGCCGCGACAGGCGACACCTTCTGCTGGCCTTGCCTTG
TTGCTGTGCCCCTGTGTGCGTGAGCGTGTGCGGTGCGGTGCGATTGTGTG
CGTGGGTTGCCAAGAGTGAAGAGAATCGCTGAGTTTCCAAGATGATGAGC
AACTACGGCAACATGATGGACTCACCGAAGTCATCGCCCCACGGCGGCGG
CCGATCACCCGTGGTGGCCCGTCAAGACTCATCCGGCACCCTGAAAACGA
CCATTTCGCTGGGCAAGACGCCAACGATCATTCACACGGGGCCATTTTAC
TCCATGAAGGAACCACCCGCCAAGGCAGAACTTACCGGCGACAAGGATCT
CATGACCGAGTACGGACTGCACCACACACTCACCAAGTTCAAGGAGAAGA
AGTTCAAGGAGTCGCTGGCCTCGTTTCTGCAGAACATCCCCGGCATTAAC
GACCTCATCACGCATCCCGTGGAGAATAGCACGCTGCGGAGCGTGATCGA
AAAGCCGCCCATTGGTGGAAAGGAGCTTCTTCCGCTGACTCCCGTGCAGC
TGGCCGGATTCCGCTTGCATCCCGGACCGCTGCCGGAACAGTATCGTACC
ACATATGTCACACCTGCGCGTAAACACAAAAACAAACACAAAAAGCAAAA
ACACAAAGACGGGGTGACCACGGGACAGGAATCCACGCTGCTCGACTCGG
CCGGCCTGGAGACTTACGAGAAAAAGCACAAGAAGCAGAAACGCCATGAG
GACGACAAGGAGCGCAAGAAGCGCAAAAAGGAGAAAAAGCGTAAAAAGAA
AAACCAGAGCCCCGAACCGGGCGTGGGCTTGCTGCCCGGAGGAGCGAGCT
TGGGCGGAGCAGCGGGTGTAATGGGAGCCACTAGTCTGGGATCGCTGGGA
GGAGGACCTGGAGGACCCGGGCTGTCCAGCCTTAGTGCCAGTATGGGACC
TGGCGTTGTGGGGAACATGAATAGCTTCTCCTCATCGATGCAGATGCAGC
AGCAACAGCAGATGCCCATGCAGCAACAGCAGATGTCAAGTGGCGGTCTG
CTGGGATCTGTGCTGGGCACTAGTGGCGGTCCAGGTGGCGGCGGCGGAGG
AGGAGGTGGTGGCGGGGGCGGCGTCGGTGGGAGTCTGCTTATGTCGCAGT
TTTAGGCAGGATCCTTTAGCAAAATAGACTTGGCTCATTACCTCTCATCA
GCAGACGCACCCCAAATGGCAACATAAAAAAAACGCAGAGGGCCTCGGTC
CTCTACATGCAATTTTCTCGATATCGTTTCGTGTCCTAGTTATTAATTTA
TGATTATTGTAAATGTAAAATAGTTTATTTCTGTAATTAGCCAACAATTT
TTCGTTCGTTTTCGCGCTAGCTTAATGAGATTTATTTAAACGCAAGTTAT
GGTACAAAACGCAAGAACGTTTTCGCTCTCGATTCCAGCTCTTCCCTCCA
CACAAACACACCCCTCGCCACGCCGCCACAAAAACGCTGCTTTGCAACCT
CTTTAATTTGCTTACCAACCTTGTAACGTGTGTAGGGTCAGTATTTCAAT
TAAATTTCTGCAATGGTTTGTTCTTCCAGCAAGTTTATAAACACAAAAAA
AAAAAAAAAAAAA

LD41395.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RA 1951 MED19-RA 70..1821 1..1752 8745 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17833425..17834325 1744..844 4505 100 Minus
chr3L 24539361 chr3L 17835364..17836092 729..1 3645 100 Minus
chr3L 24539361 chr3L 17834390..17834505 844..729 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17843807..17844715 1752..844 4530 99.9 Minus
3L 28110227 3L 17845754..17846482 729..1 3645 100 Minus
3L 28110227 3L 17844780..17844895 844..729 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17836907..17837815 1752..844 4530 99.8 Minus
3L 28103327 3L 17838854..17839582 729..1 3645 100 Minus
3L 28103327 3L 17837880..17837995 844..729 580 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:01:08 has no hits.

LD41395.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:02:06 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17833425..17834324 845..1744 100 <- Minus
chr3L 17834390..17834504 730..844 100 <- Minus
chr3L 17835364..17836092 1..729 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:48 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 292..1305 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:43 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 292..1305 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:09 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 292..1305 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:10 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 292..1305 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:50:07 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 292..1305 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:14 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 19..1762 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:43 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 19..1762 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:09 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 20..1763 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:10 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 19..1762 1..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:07 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 20..1763 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:06 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17843815..17844714 845..1744 100 <- Minus
3L 17844780..17844894 730..844 100 <- Minus
3L 17845754..17846482 1..729 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:06 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17843815..17844714 845..1744 100 <- Minus
3L 17844780..17844894 730..844 100 <- Minus
3L 17845754..17846482 1..729 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:06 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17843815..17844714 845..1744 100 <- Minus
3L 17844780..17844894 730..844 100 <- Minus
3L 17845754..17846482 1..729 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:09 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17836915..17837814 845..1744 100 <- Minus
arm_3L 17837880..17837994 730..844 100 <- Minus
arm_3L 17838854..17839582 1..729 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:14 Download gff for LD41395.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17836915..17837814 845..1744 100 <- Minus
3L 17837880..17837994 730..844 100 <- Minus
3L 17838854..17839582 1..729 100   Minus

LD41395.pep Sequence

Translation from 291 to 1304

> LD41395.pep
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*

LD41395.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25231-PA 343 GF25231-PA 1..307 1..308 938 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15773-PA 335 GG15773-PA 1..335 1..337 1661 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14462-PA 340 GH14462-PA 1..231 1..230 894 94.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-PB 337 CG5546-PB 1..337 1..337 1764 100 Plus
MED19-PA 337 CG5546-PA 1..337 1..337 1764 100 Plus
Tomosyn-PL 1387 CG17762-PL 652..849 149..331 154 24.5 Plus
Tomosyn-PK 1387 CG17762-PK 652..849 149..331 154 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13607-PA 342 GI13607-PA 1..231 1..230 897 94.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22742-PA 338 GL22742-PA 1..286 1..282 934 86.1 Plus
Dper\GL19792-PA 385 GL19792-PA 272..368 57..153 172 45.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18960-PA 338 GA18960-PA 1..286 1..282 934 86.1 Plus
Dpse\GA27167-PA 274 GA27167-PA 1..178 8..203 316 41.3 Plus
Dpse\GA27161-PA 133 GA27161-PA 18..112 57..151 153 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24298-PA 335 GM24298-PA 1..335 1..337 1667 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12367-PA 334 GD12367-PA 1..334 1..337 1654 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13943-PA 338 GJ13943-PA 1..338 1..337 904 77.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21178-PA 342 GK21178-PA 1..311 1..308 1075 88.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22108-PA 336 GE22108-PA 1..336 1..337 1650 97.3 Plus

LD41395.hyp Sequence

Translation from 291 to 1304

> LD41395.hyp
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*

LD41395.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-PB 337 CG5546-PB 1..337 1..337 1764 100 Plus
MED19-PA 337 CG5546-PA 1..337 1..337 1764 100 Plus
Tomosyn-PL 1387 CG17762-PL 652..849 149..331 154 24.5 Plus
Tomosyn-PK 1387 CG17762-PK 652..849 149..331 154 24.5 Plus