BDGP Sequence Production Resources |
Search the DGRC for LD41395
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 413 |
Well: | 95 |
Vector: | pOT2 |
Associated Gene/Transcript | MED19-RA |
Protein status: | LD41395.pep: gold |
Preliminary Size: | 1852 |
Sequenced Size: | 1763 |
Gene | Date | Evidence |
---|---|---|
CG5546 | 2001-11-29 | Blastp of sequenced clone |
CG5546 | 2003-01-01 | Sim4 clustering to Release 3 |
MED19 | 2008-04-29 | Release 5.5 accounting |
MED19 | 2008-08-15 | Release 5.9 accounting |
MED19 | 2008-12-18 | 5.12 accounting |
1763 bp (1763 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069647
> LD41395.complete TTCGCGGACACAACAAGATGGCGAGACTTGCCCCCGAAATCTGTTAGAAA ACGCCACAAGAGCAAATAATTAGTTCAGTTTTCGACCAGAAAAGAGTCAG CCGAAGTGCCGGGCAGACGCGGCGCATTTTGCAGAGTGTGAGCTTGGCCA GCGTTGCCCGAGAGCCGCGACAGGCGACACCTTCTGCTGGCCTTGCCTTG TTGCTGTGCCCCTGTGTGCGTGAGCGTGTGCGGTGCGGTGCGATTGTGTG CGTGGGTTGCCAAGAGTGAAGAGAATCGCTGAGTTTCCAAGATGATGAGC AACTACGGCAACATGATGGACTCACCGAAGTCATCGCCCCACGGCGGCGG CCGATCACCCGTGGTGGCCCGTCAAGACTCATCCGGCACCCTGAAAACGA CCATTTCGCTGGGCAAGACGCCAACGATCATTCACACGGGGCCATTTTAC TCCATGAAGGAACCACCCGCCAAGGCAGAACTTACCGGCGACAAGGATCT CATGACCGAGTACGGACTGCACCACACACTCACCAAGTTCAAGGAGAAGA AGTTCAAGGAGTCGCTGGCCTCGTTTCTGCAGAACATCCCCGGCATTAAC GACCTCATCACGCATCCCGTGGAGAATAGCACGCTGCGGAGCGTGATCGA AAAGCCGCCCATTGGTGGAAAGGAGCTTCTTCCGCTGACTCCCGTGCAGC TGGCCGGATTCCGCTTGCATCCCGGACCGCTGCCGGAACAGTATCGTACC ACATATGTCACACCTGCGCGTAAACACAAAAACAAACACAAAAAGCAAAA ACACAAAGACGGGGTGACCACGGGACAGGAATCCACGCTGCTCGACTCGG CCGGCCTGGAGACTTACGAGAAAAAGCACAAGAAGCAGAAACGCCATGAG GACGACAAGGAGCGCAAGAAGCGCAAAAAGGAGAAAAAGCGTAAAAAGAA AAACCAGAGCCCCGAACCGGGCGTGGGCTTGCTGCCCGGAGGAGCGAGCT TGGGCGGAGCAGCGGGTGTAATGGGAGCCACTAGTCTGGGATCGCTGGGA GGAGGACCTGGAGGACCCGGGCTGTCCAGCCTTAGTGCCAGTATGGGACC TGGCGTTGTGGGGAACATGAATAGCTTCTCCTCATCGATGCAGATGCAGC AGCAACAGCAGATGCCCATGCAGCAACAGCAGATGTCAAGTGGCGGTCTG CTGGGATCTGTGCTGGGCACTAGTGGCGGTCCAGGTGGCGGCGGCGGAGG AGGAGGTGGTGGCGGGGGCGGCGTCGGTGGGAGTCTGCTTATGTCGCAGT TTTAGGCAGGATCCTTTAGCAAAATAGACTTGGCTCATTACCTCTCATCA GCAGACGCACCCCAAATGGCAACATAAAAAAAACGCAGAGGGCCTCGGTC CTCTACATGCAATTTTCTCGATATCGTTTCGTGTCCTAGTTATTAATTTA TGATTATTGTAAATGTAAAATAGTTTATTTCTGTAATTAGCCAACAATTT TTCGTTCGTTTTCGCGCTAGCTTAATGAGATTTATTTAAACGCAAGTTAT GGTACAAAACGCAAGAACGTTTTCGCTCTCGATTCCAGCTCTTCCCTCCA CACAAACACACCCCTCGCCACGCCGCCACAAAAACGCTGCTTTGCAACCT CTTTAATTTGCTTACCAACCTTGTAACGTGTGTAGGGTCAGTATTTCAAT TAAATTTCTGCAATGGTTTGTTCTTCCAGCAAGTTTATAAACACAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED19-RA | 1951 | MED19-RA | 70..1821 | 1..1752 | 8745 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17833425..17834325 | 1744..844 | 4505 | 100 | Minus |
chr3L | 24539361 | chr3L | 17835364..17836092 | 729..1 | 3645 | 100 | Minus |
chr3L | 24539361 | chr3L | 17834390..17834505 | 844..729 | 580 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17843807..17844715 | 1752..844 | 4530 | 99.9 | Minus |
3L | 28110227 | 3L | 17845754..17846482 | 729..1 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 17844780..17844895 | 844..729 | 580 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17836907..17837815 | 1752..844 | 4530 | 99.8 | Minus |
3L | 28103327 | 3L | 17838854..17839582 | 729..1 | 3645 | 100 | Minus |
3L | 28103327 | 3L | 17837880..17837995 | 844..729 | 580 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17833425..17834324 | 845..1744 | 100 | <- | Minus |
chr3L | 17834390..17834504 | 730..844 | 100 | <- | Minus |
chr3L | 17835364..17836092 | 1..729 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 1..1014 | 292..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 1..1014 | 292..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 1..1014 | 292..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 1..1014 | 292..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 1..1014 | 292..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 19..1762 | 1..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 19..1762 | 1..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 20..1763 | 1..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 19..1762 | 1..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED19-RA | 20..1763 | 1..1744 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17843815..17844714 | 845..1744 | 100 | <- | Minus |
3L | 17844780..17844894 | 730..844 | 100 | <- | Minus |
3L | 17845754..17846482 | 1..729 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17843815..17844714 | 845..1744 | 100 | <- | Minus |
3L | 17844780..17844894 | 730..844 | 100 | <- | Minus |
3L | 17845754..17846482 | 1..729 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17843815..17844714 | 845..1744 | 100 | <- | Minus |
3L | 17844780..17844894 | 730..844 | 100 | <- | Minus |
3L | 17845754..17846482 | 1..729 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17836915..17837814 | 845..1744 | 100 | <- | Minus |
arm_3L | 17837880..17837994 | 730..844 | 100 | <- | Minus |
arm_3L | 17838854..17839582 | 1..729 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17836915..17837814 | 845..1744 | 100 | <- | Minus |
3L | 17837880..17837994 | 730..844 | 100 | <- | Minus |
3L | 17838854..17839582 | 1..729 | 100 | Minus |
Translation from 291 to 1304
> LD41395.pep MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25231-PA | 343 | GF25231-PA | 1..307 | 1..308 | 938 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15773-PA | 335 | GG15773-PA | 1..335 | 1..337 | 1661 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14462-PA | 340 | GH14462-PA | 1..231 | 1..230 | 894 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED19-PB | 337 | CG5546-PB | 1..337 | 1..337 | 1764 | 100 | Plus |
MED19-PA | 337 | CG5546-PA | 1..337 | 1..337 | 1764 | 100 | Plus |
Tomosyn-PL | 1387 | CG17762-PL | 652..849 | 149..331 | 154 | 24.5 | Plus |
Tomosyn-PK | 1387 | CG17762-PK | 652..849 | 149..331 | 154 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13607-PA | 342 | GI13607-PA | 1..231 | 1..230 | 897 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22742-PA | 338 | GL22742-PA | 1..286 | 1..282 | 934 | 86.1 | Plus |
Dper\GL19792-PA | 385 | GL19792-PA | 272..368 | 57..153 | 172 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18960-PA | 338 | GA18960-PA | 1..286 | 1..282 | 934 | 86.1 | Plus |
Dpse\GA27167-PA | 274 | GA27167-PA | 1..178 | 8..203 | 316 | 41.3 | Plus |
Dpse\GA27161-PA | 133 | GA27161-PA | 18..112 | 57..151 | 153 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24298-PA | 335 | GM24298-PA | 1..335 | 1..337 | 1667 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12367-PA | 334 | GD12367-PA | 1..334 | 1..337 | 1654 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13943-PA | 338 | GJ13943-PA | 1..338 | 1..337 | 904 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21178-PA | 342 | GK21178-PA | 1..311 | 1..308 | 1075 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22108-PA | 336 | GE22108-PA | 1..336 | 1..337 | 1650 | 97.3 | Plus |
Translation from 291 to 1304
> LD41395.hyp MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED19-PB | 337 | CG5546-PB | 1..337 | 1..337 | 1764 | 100 | Plus |
MED19-PA | 337 | CG5546-PA | 1..337 | 1..337 | 1764 | 100 | Plus |
Tomosyn-PL | 1387 | CG17762-PL | 652..849 | 149..331 | 154 | 24.5 | Plus |
Tomosyn-PK | 1387 | CG17762-PK | 652..849 | 149..331 | 154 | 24.5 | Plus |