Clone LD41421 Report

Search the DGRC for LD41421

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:414
Well:21
Vector:pOT2
Associated Gene/TranscriptCG2371-RB
Protein status:LD41421.pep: gold
Preliminary Size:1245
Sequenced Size:1137

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2371 2001-01-01 Release 2 assignment
CG2371 2003-01-01 Sim4 clustering to Release 3
CG2371 2003-02-22 Blastp of sequenced clone
CG2371 2008-04-29 Release 5.5 accounting
CG2371 2008-08-15 Release 5.9 accounting
CG2371 2008-12-18 5.12 accounting

Clone Sequence Records

LD41421.complete Sequence

1137 bp (1137 high quality bases) assembled on 2003-02-22

GenBank Submission: AY069648

> LD41421.complete
ATTAAAGTCATAATAAAAGAAGTGCTGGTAAAGACTTAATAACTCTATGT
TCCTTAAAAATTTTTAAATATATCTCACAATGAGCATTAACTGGATAAAG
ATCACGGAAAGAGCCCGTGAGGGCATCAAAATCATCAATGCCTTGCCCTA
CGAGACCTTTACGACGGTTCTGTTCTACACCCACCGGCAGATGAGTCCCA
GCGTAGCATCGGCGAGTGCCACCAGTAGTACAGTGGGCACCAGTGTGACG
ACCACCGGCCGGGTGGACAGCAGCACCGAGGAGAACCCCACAAGTAACAC
CGAACCGGAGTACACACTCGAGGAACTGGAGCGATTGGTGGGCGTACCGC
GTCAGGACTTCCTGCTGCTGATCAAGACCTTCTCCTACATCCTGCGTCGC
ATCTCCACGTTTATCATCAAGCCAAGTTTGCTGCAGCGTGAGCTGCGCGA
GAAACTCCAGCTGGAGGATGAGGCCAAGATCGATGCCATATTGCGTTTGT
GGGTGCGCGAAACGACGCCCATTATGAACAATTTGGCCAGCAAGCGGTAC
GAATCAAATGTCATCGAAGATGTGGCCTGGAAGCTCAACATGGAGATCTC
CTCGCATTGCCAGCAGCGGGAGAAGACCCCGCTGGCCGTGCTCCAAATGA
AAACGGCCGTCGGCGAGGATATCAACATCGAAATGACACAACCGGAACTA
ATGGAACTGTACAATCAGTTCGAGAGCATCCAGGGCGAACTGGACGCCAT
GCTGGCCATGAAGACTACAGGAGCAACGGCGCCTGGCAATCAGTAGTGGG
ACGCCATCGACCAATTCCAGTGCCAATTTTATTGTTGATTCACACAAAAC
TCTGTGCAAAAAGATGGACCTAAAAGTATGCAATACTAACACGATCGTAG
CCAAATGTTAAACACGTTTTTTTTTGTTTAATTCAGTAGGGTTTTTCCTA
TGTTCTGGCTAATTTTCCGAACGTAGCCAAATTTTTACTAGAGTAAGAGT
TCGGCTTTGATTTATAAAACGTTGCAATGATTAGGATCTTCCAAACAGGA
CTAGTTTTTAAGTTTTAGAACTTACCCTCTGCAAAATAATAAATCCTTTA
ATAAATTTAGATAAAACAAAAAAAAAAAAAAAAAAAA

LD41421.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-RB 1195 CG2371-RB 67..1185 1..1119 5595 100 Plus
CG2371-RC 1172 CG2371-RC 165..1172 110..1117 5040 100 Plus
CG2371.a 1120 CG2371.a 64..938 1..875 4375 100 Plus
CG2371.a 1120 CG2371.a 939..1120 937..1118 910 100 Plus
CG2371-RC 1172 CG2371-RC 3..113 1..111 555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11568532..11569539 1117..110 5040 100 Minus
chrX 22417052 chrX 11569591..11569701 111..1 540 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11677342..11678351 1119..110 5050 100 Minus
X 23542271 X 11678403..11678513 111..1 555 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11685440..11686449 1119..110 5050 100 Minus
X 23527363 X 11686501..11686611 111..1 555 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:06:15 has no hits.

LD41421.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:07 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11568532..11569537 112..1117 100 <- Minus
chrX 11569591..11569701 1..111 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:49 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 80..796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:01 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 80..796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:39 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 80..796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:24 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 80..796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:10 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 80..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:34 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 39..1155 1..1117 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:01 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 39..1155 1..1117 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:39 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 39..1155 1..1117 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:24 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 39..1155 1..1117 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:10 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 39..1155 1..1117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:07 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
X 11677344..11678349 112..1117 100 <- Minus
X 11678403..11678513 1..111 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:07 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
X 11677344..11678349 112..1117 100 <- Minus
X 11678403..11678513 1..111 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:07 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
X 11677344..11678349 112..1117 100 <- Minus
X 11678403..11678513 1..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:39 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11571377..11572382 112..1117 100 <- Minus
arm_X 11572436..11572546 1..111 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:47 Download gff for LD41421.complete
Subject Subject Range Query Range Percent Splice Strand
X 11685442..11686447 112..1117 100 <- Minus
X 11686501..11686611 1..111 100   Minus

LD41421.pep Sequence

Translation from 79 to 795

> LD41421.pep
MSINWIKITERAREGIKIINALPYETFTTVLFYTHRQMSPSVASASATSS
TVGTSVTTTGRVDSSTEENPTSNTEPEYTLEELERLVGVPRQDFLLLIKT
FSYILRRISTFIIKPSLLQRELREKLQLEDEAKIDAILRLWVRETTPIMN
NLASKRYESNVIEDVAWKLNMEISSHCQQREKTPLAVLQMKTAVGEDINI
EMTQPELMELYNQFESIQGELDAMLAMKTTGATAPGNQ*

LD41421.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21440-PA 242 GF21440-PA 1..230 1..228 1008 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18843-PA 238 GG18843-PA 1..238 1..238 1215 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12111-PA 243 GH12111-PA 1..243 1..238 902 72.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vlet-PB 238 CG2371-PB 1..238 1..238 1193 100 Plus
Vlet-PC 201 CG2371-PC 1..201 38..238 1000 100 Plus
Vlet-PA 201 CG2371-PA 1..201 38..238 1000 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16322-PA 233 GI16322-PA 1..224 1..226 902 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12891-PA 243 GL12891-PA 1..230 1..231 954 82.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15360-PA 243 GA15360-PA 1..230 1..231 951 82.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13055-PA 238 GM13055-PA 1..238 1..238 1218 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15662-PA 240 GJ15662-PA 1..231 1..226 871 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25722-PA 243 GK25722-PA 1..242 1..236 942 77.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17608-PA 238 GE17608-PA 1..238 1..238 1086 95.4 Plus

LD41421.hyp Sequence

Translation from 79 to 795

> LD41421.hyp
MSINWIKITERAREGIKIINALPYETFTTVLFYTHRQMSPSVASASATSS
TVGTSVTTTGRVDSSTEENPTSNTEPEYTLEELERLVGVPRQDFLLLIKT
FSYILRRISTFIIKPSLLQRELREKLQLEDEAKIDAILRLWVRETTPIMN
NLASKRYESNVIEDVAWKLNMEISSHCQQREKTPLAVLQMKTAVGEDINI
EMTQPELMELYNQFESIQGELDAMLAMKTTGATAPGNQ*

LD41421.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-PB 238 CG2371-PB 1..238 1..238 1193 100 Plus
CG2371-PC 201 CG2371-PC 1..201 38..238 1000 100 Plus
CG2371-PA 201 CG2371-PA 1..201 38..238 1000 100 Plus