Clone LD41433 Report

Search the DGRC for LD41433

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:414
Well:33
Vector:pOT2
Associated Gene/TranscripteIF2B-epsilon-RA
Protein status:LD41433.pep: gold
Preliminary Size:2270
Sequenced Size:2307

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3806 2001-01-01 Release 2 assignment
CG3806 2002-04-04 Blastp of sequenced clone
eIF2B-epsilon 2008-04-29 Release 5.5 accounting
eIF2B-epsilon 2008-08-15 Release 5.9 accounting
eIF2B-epsilon 2008-12-18 5.12 accounting

Clone Sequence Records

LD41433.complete Sequence

2307 bp (2307 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095053

> LD41433.complete
AGATGGCCCAATTCGAGAAGGAGATCGTTCAGGCGGTGCTGATCGCCGAC
AACAATGTGTGGAACTTCAAGCCCCTCTCCGACGAGGGCTCTACGGCCCT
GCTGCCGCTGGTCAACGTGCGGATGCTTGACTACGCTCTCATGGCGCTGA
ACCGCAGCGGCGTGGAGGAGGTGTTCGTGTACACCAGCCTCTATCGCTCG
AGCATCCGGGAGCACATCAGGGCCGGCATTGCCACGGACGCAGCCTGGTC
ATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGGTTGTCGCTGCTTCG
GCGATGCCATGCGTGATTTGGACAATAAGGCGCTGATCCGTGGCCACTTC
ATTCTGCTCGGCGCCGATACGGTGACCAATGCCGATCTGCGCCCAGTGCT
GGAGCAGCACAAGCGGCAGGCCAAGTTCGACAAGGGCACGGCCGCCACGC
TGGTGTTCAAGGAGTGTGCCAACAATGTGCGCACTGGCAACGAGGTGCTG
ATCGCCGTGGACCGTCGCAACGACCGGCTGCACTACCACCAGCGGCTGCG
GATGCACCACAAGGAGAATCGCTACCAACTACCACTAGATGTCTTTCTGG
GCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAGATCCGCAGATTGCC
ATTGGCTCGCCCTCAATGCTGTCCCTGTTCAACGACAACTTTGACTTTCA
GACGCGTGATGACTTCGTCAGGGGTTTGTTGATAAACGAGGAACTGCTGG
ACAGCAGGATATATGTGGCACTGCTCCCGGCAGCCCAGTACGCGCACAAG
GTGAACAACTGGCCGGCCTACCAGCTGGTTAGTCGGGACATTATCAACCG
GTGGGCCTACCCCTTCGTTCCGGACATAGGCCTTTACAAGCTGCAGCAGG
AGTACGTCTTCCACAAGGACAACATCTACAAGAGCCCCGAGGCGCATGTC
TCGAAAGTGGCTTTGCTCCAGAACGTGGTCATCGAAGCGGGCAGTCACGT
AGACAGTGGCTCAGTGATTAGTGACAGCGTGATTGGCGCCAATTGCCGGA
TCGGCAAGAACTGTCGACTGACCAATGCGTTCCTCATGGCCGACGTCACC
GTAATGGACAACTGCAGACTGGAGCACTGCGTGGTGGGCGAAGGAGCCAT
CATCAACGAGGATTGCGACGTGAGCGCGGGCTGTGTGCTCGGTGCTAAAA
GCGTGCTGCCTGCCAAGAAAACGCTGGCGAAGACCCTTATCACCAGAACG
CCCAGCAGACGGCGTAGCGATGATGAGGTGGTAGTGGAGCTGAAGTCCAT
CGGTCCGCATGCCTATATTGTCAGCGATTTGACGACGGGTGATCCCGAGG
ACTCGGAGTGCGAGGACTTGTTGCCACAGCAGCCGCTCAGTATACCCAAA
ATGGGAGACTTGCTGGCGCCGCTGGACGAGATCAGTTACTGCAGCGATTT
TAGCGAGGACGACGAGGATGCCTCGCGAGCGGTAACGCCACTGCCCGATG
ACACAAACATTTTCCTGGGCGAAGTCATCGATTCCTTGACACGGGGCTTC
CGGGAGAAGTCCAACCCTGACTTCCTTGTCCTAGAAATCAACTCCTCGCG
CTATGCGTACAACATGTCCCTCAAAGAAGTCAACTTCAACGTGGTGAAGG
CCGTTTTTGGCATGCAGAGCATCGTGGAACCGGCCAACGACAACGTACTA
GTGGCCATAAACGCAGCCTTTAAACAACTGGGCCCTGTGGTATCCAACTA
CATTAAGAGCGAGGATTCCATGATGGATTGTCTCAAGGCGCTGGAGGATG
TGTACGAGGAGAATCATCTAGTGCGGGGGAAGATCTCGCAGATCGTGCAC
TATCTGTACGACAAGGACTTTGTGTCCGAGAGTGCCATTCAGGCGTGGTA
CGCGCAGTTGGACGAGGAGGAGCATGCACACCTGCGCCAAAGCCTCGCCA
AGCTCGTGGCTTGGTTGGATCAATCCAGCGAAGAAGATGATGACGAGGAG
GACGATGACTAAGCAAAGTCGTAGCCCTTATTCTTTATTCCCATTTGTTT
AAGTCATTTCCTTGCTCATTCTAAGGAAATGGAAAATTAATGTAAGGTCG
CTCGAAAATTCACATCGACATATTTTGGCCAAATTTCGACTTTGCGTCCG
AAATCTGCTAGTTTTTTGGCCACAACGTCGGAAATAATTGGCGAAAGATG
AAGTGTGATGCATCGTTGAGCTTGTAATTAAAATCCAAATCGACTGACAA
AAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

LD41433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-epsilon-RA 2493 eIF2B-epsilon-RA 103..2351 1..2249 11245 100 Plus
eIF2B-epsilon-RB 2500 eIF2B-epsilon-RB 103..2351 1..2249 11245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1815024..1816315 1509..218 6460 100 Minus
chrX 22417052 chrX 1814158..1814612 2249..1795 2275 100 Minus
chrX 22417052 chrX 1814671..1814958 1797..1510 1440 100 Minus
chrX 22417052 chrX 1816385..1816511 221..95 605 98.4 Minus
chrX 22417052 chrX 1816573..1816668 96..1 465 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1921181..1922472 1509..218 6460 100 Minus
X 23542271 X 1920315..1920769 2249..1795 2275 100 Minus
X 23542271 X 1920828..1921115 1797..1510 1440 100 Minus
X 23542271 X 1922542..1922668 221..95 635 100 Minus
X 23542271 X 1922730..1922825 96..1 480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1929279..1930570 1509..218 6460 100 Minus
X 23527363 X 1928413..1928867 2249..1795 2275 100 Minus
X 23527363 X 1928926..1929213 1797..1510 1440 100 Minus
X 23527363 X 1930640..1930766 221..95 635 100 Minus
X 23527363 X 1930828..1930923 96..1 480 100 Minus
Blast to na_te.dros performed 2019-03-15 18:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 478..581 1902..2002 126 63.6 Plus

LD41433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:21 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1814285..1814610 1797..2122 100 <- Minus
chrX 1814672..1814958 1510..1796 100 <- Minus
chrX 1815024..1816312 221..1509 100 <- Minus
chrX 1816386..1816510 96..220 98 <- Minus
chrX 1816574..1816668 1..95 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:52 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 1..2010 3..2012 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:16:42 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 1..2010 3..2012 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:44 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RA 1..2010 3..2012 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:36 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 1..2010 3..2012 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:28 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RA 1..2010 3..2012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:55 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 37..2284 1..2248 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:16:42 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 60..2307 1..2248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:44 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 60..2307 1..2248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:36 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 37..2284 1..2248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:28 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-epsilon-RB 50..2297 1..2248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:21 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
X 1920316..1920767 1797..2248 100 <- Minus
X 1920829..1921115 1510..1796 100 <- Minus
X 1921181..1922469 221..1509 100 <- Minus
X 1922543..1922667 96..220 100 <- Minus
X 1922731..1922825 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:21 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
X 1920316..1920767 1797..2248 100 <- Minus
X 1920829..1921115 1510..1796 100 <- Minus
X 1921181..1922469 221..1509 100 <- Minus
X 1922543..1922667 96..220 100 <- Minus
X 1922731..1922825 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:21 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
X 1920316..1920767 1797..2248 100 <- Minus
X 1920829..1921115 1510..1796 100 <- Minus
X 1921181..1922469 221..1509 100 <- Minus
X 1922543..1922667 96..220 100 <- Minus
X 1922731..1922825 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:44 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1814349..1814800 1797..2248 100 <- Minus
arm_X 1814862..1815148 1510..1796 100 <- Minus
arm_X 1815214..1816502 221..1509 100 <- Minus
arm_X 1816576..1816700 96..220 100 <- Minus
arm_X 1816764..1816858 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:08 Download gff for LD41433.complete
Subject Subject Range Query Range Percent Splice Strand
X 1928414..1928865 1797..2248 100 <- Minus
X 1928927..1929213 1510..1796 100 <- Minus
X 1929279..1930567 221..1509 100 <- Minus
X 1930641..1930765 96..220 100 <- Minus
X 1930829..1930923 1..95 100   Minus

LD41433.pep Sequence

Translation from 2 to 2011

> LD41433.pep
MAQFEKEIVQAVLIADNNVWNFKPLSDEGSTALLPLVNVRMLDYALMALN
RSGVEEVFVYTSLYRSSIREHIRAGIATDAAWSFKMTVHVIGGEGCRCFG
DAMRDLDNKALIRGHFILLGADTVTNADLRPVLEQHKRQAKFDKGTAATL
VFKECANNVRTGNEVLIAVDRRNDRLHYHQRLRMHHKENRYQLPLDVFLG
NSCVALHHNLLDPQIAIGSPSMLSLFNDNFDFQTRDDFVRGLLINEELLD
SRIYVALLPAAQYAHKVNNWPAYQLVSRDIINRWAYPFVPDIGLYKLQQE
YVFHKDNIYKSPEAHVSKVALLQNVVIEAGSHVDSGSVISDSVIGANCRI
GKNCRLTNAFLMADVTVMDNCRLEHCVVGEGAIINEDCDVSAGCVLGAKS
VLPAKKTLAKTLITRTPSRRRSDDEVVVELKSIGPHAYIVSDLTTGDPED
SECEDLLPQQPLSIPKMGDLLAPLDEISYCSDFSEDDEDASRAVTPLPDD
TNIFLGEVIDSLTRGFREKSNPDFLVLEINSSRYAYNMSLKEVNFNVVKA
VFGMQSIVEPANDNVLVAINAAFKQLGPVVSNYIKSEDSMMDCLKALEDV
YEENHLVRGKISQIVHYLYDKDFVSESAIQAWYAQLDEEEHAHLRQSLAK
LVAWLDQSSEEDDDEEDDD*

LD41433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19470-PA 674 GF19470-PA 1..663 1..661 2977 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12666-PA 665 GG12666-PA 1..653 1..659 3299 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12742-PA 683 GH12742-PA 1..665 1..660 2718 76.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2Bepsilon-PB 669 CG3806-PB 1..669 1..669 3466 100 Plus
eIF2Bepsilon-PA 669 CG3806-PA 1..669 1..669 3466 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15885-PA 683 GI15885-PA 1..664 1..659 2740 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18343-PA 467 GL18343-PA 1..451 1..472 1910 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17698-PA 678 GA17698-PA 1..663 1..657 2990 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18935-PA 672 GM18935-PA 1..672 1..669 3478 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24621-PA 175 GD24621-PA 1..170 222..391 883 96.5 Plus
Dsim\GD24620-PA 123 GD24620-PA 1..117 1..117 608 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16633-PA 674 GJ16633-PA 1..664 1..660 2734 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16270-PA 675 GK16270-PA 1..662 1..659 2831 79.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16994-PA 671 GE16994-PA 1..659 1..659 3384 95.6 Plus

LD41433.hyp Sequence

Translation from 2 to 2011

> LD41433.hyp
MAQFEKEIVQAVLIADNNVWNFKPLSDEGSTALLPLVNVRMLDYALMALN
RSGVEEVFVYTSLYRSSIREHIRAGIATDAAWSFKMTVHVIGGEGCRCFG
DAMRDLDNKALIRGHFILLGADTVTNADLRPVLEQHKRQAKFDKGTAATL
VFKECANNVRTGNEVLIAVDRRNDRLHYHQRLRMHHKENRYQLPLDVFLG
NSCVALHHNLLDPQIAIGSPSMLSLFNDNFDFQTRDDFVRGLLINEELLD
SRIYVALLPAAQYAHKVNNWPAYQLVSRDIINRWAYPFVPDIGLYKLQQE
YVFHKDNIYKSPEAHVSKVALLQNVVIEAGSHVDSGSVISDSVIGANCRI
GKNCRLTNAFLMADVTVMDNCRLEHCVVGEGAIINEDCDVSAGCVLGAKS
VLPAKKTLAKTLITRTPSRRRSDDEVVVELKSIGPHAYIVSDLTTGDPED
SECEDLLPQQPLSIPKMGDLLAPLDEISYCSDFSEDDEDASRAVTPLPDD
TNIFLGEVIDSLTRGFREKSNPDFLVLEINSSRYAYNMSLKEVNFNVVKA
VFGMQSIVEPANDNVLVAINAAFKQLGPVVSNYIKSEDSMMDCLKALEDV
YEENHLVRGKISQIVHYLYDKDFVSESAIQAWYAQLDEEEHAHLRQSLAK
LVAWLDQSSEEDDDEEDDD*

LD41433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-epsilon-PB 669 CG3806-PB 1..669 1..669 3466 100 Plus
eIF2B-epsilon-PA 669 CG3806-PA 1..669 1..669 3466 100 Plus