Clone LD41462 Report

Search the DGRC for LD41462

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:414
Well:62
Vector:pOT2
Associated Gene/TranscriptCG4332-RA
Protein status:LD41462.pep: gold
Preliminary Size:2187
Sequenced Size:2278

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4332 2001-01-01 Release 2 assignment
CG4332 2001-07-04 Blastp of sequenced clone
CG4332 2003-01-01 Sim4 clustering to Release 3
CG4332 2008-04-29 Release 5.5 accounting
CG4332 2008-08-15 Release 5.9 accounting
CG4332 2008-12-18 5.12 accounting

Clone Sequence Records

LD41462.complete Sequence

2278 bp (2278 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051932

> LD41462.complete
CCAATACCAATAAAACGCCGGCCAACGCACCAACGAGAAAACCGTAAGAG
GAGGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCGTTGCATTTCT
GGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTCTTCACTACGC
TGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGCGGACAGGCCA
CGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTCCCATTGCCAC
CGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTATGATCAAAACT
TTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCGCCGGAATGGC
TCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGCCACTGGAATG
GCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACGATGAGTCTCA
CGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCTTGGAGATTCC
GAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGAAGAAAGCCTC
CACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTTTACGTCACCC
TGCTCAACGATCTCTATTCCGTTTCGCAAGCGGATGTCCCACCTGAAATG
GCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGCCCATCCTGCA
GACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCCGTCACCCGCA
ATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGTGGGCGTGGGC
AAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGGCGCTGCTCAC
CATTGGATTTGCTACCAAGGATATTGACGAGGTGAAAGGCATCTTTTCGG
ACACCAATGTATACCTTTTGTGTGGCACCATCTTTGTGTCCAGCATCCAT
ATGCTCTTCGACTTTTTAAGCTTTAAGAACGACGTGGCCTTTTGGCGCAA
AAAGCAGTCGTACGAGGGGCTATCAAGCCGCACCACAATGTGGCGAGCGT
TTTCGCAGATCGTGATCTTTTTTTATCTGCTAGATGAGAATACGTCGTAT
CTGGTACTTGTGCCAGTTGGCCTGGGCACGCTCATTGAGCTGTGGAAGTG
CAAGAAAATCTTCCGTCTGGAGCTTAGCTTCAGTGGCCTGGTTCGTCGCA
AGCTGGAGCAAGTTGACCGGCGGAATGGTGACCAAGCTGGCGTGAAGTCA
GGTCAGCTGGCGGAGGAGCAGAAGACTGATCAGTTTGACAGACAGGGCAT
GCGATATCTGAGCTATCTGCTGTATCCGCTTTGTATATGCGGAGCGGTCT
ATTCGCTCCTCTACCAACCACACCGCTCCTGGTACTCATGGACACTTAAC
TCACTGGTGAACGGAGTTTACGCCTTCGGTTTCCTGTTCATGTTGCCGCA
ACTGTTTGTAAACTACAAGCTGAAGTCTGTGGCCGCATTGCCGTGGCGCG
CATTTATGTATAAAGCATTTAATACCTTCATCGACGACTTCTTCGCCTTC
ATCATCACCATGCCCACGGCCCATCGGGTGGCCTGCCTGCGCGATGATAT
TGTGTTTATTATCTATCTGTATCAGCGCTGGCTGTATCCGGTTGACAAGA
GTCGGCTGGACACGGGTCTGTCCATTAGCGAGACCCCGGATACGGGCAAC
AGCTCATCCGCTTCCATTGCTGCCAATCGCAAGAAGCGAAATTGATCCTA
TATCAGCAAAAGGAGTAAAGGTTGCACATTCCGCCTATAGCTTGAGGTCT
AGCCCGAGACGTAGTAATCCGAGTCCGTCTTTAGTTTACTAGTGATATTA
ATCCTGTGTTGTAGTCTAAACCGTTTAAAGCTTGTGCGTAAATCGTTAAG
TTAAGAAGCATCAACTGAAAATGCGTTTTATACAATTTTAAATCAACAGC
ATCAAAGGATTGCAGAACTATGGAACTTACTAAAACACATAATTTTAAAG
TATAAATTATGAAATATTGTGAGATGACTCAAACGCTGGCCTTTCACATT
GTTAGATTGGTCAGCTAAAACCCTACAATAATATATCCAAATGTAGATCA
AAACGTATTTTAGAAACAATCAGTTAACATGAAATCGTATAGGATCGTAA
GGCTACAAGTGATTCTAAAATCTCAATTAACCAACAAATGCATTTTCTAA
AATTTAAAGGGAACCCAAAAGTATCAAAAGGCTAAATATATATAAAGTCA
ACTGAAAAAAAAAAAAAAAAAAAAAAAA

LD41462.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4332-RA 2344 CG4332-RA 38..2294 1..2257 11285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13046965..13048268 951..2254 6475 99.8 Plus
chrX 22417052 chrX 13045936..13046885 1..950 4750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13156069..13157375 951..2257 6535 100 Plus
X 23542271 X 13155040..13155989 1..950 4750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13164167..13165473 951..2257 6535 100 Plus
X 23527363 X 13163138..13164087 1..950 4750 100 Plus
Blast to na_te.dros performed 2019-03-16 01:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6179..6265 1930..2020 120 63.7 Plus

LD41462.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:33:13 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13045936..13046885 1..950 100 -> Plus
chrX 13046965..13048268 951..2254 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:53 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..1689 57..1745 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:40 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..1689 57..1745 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:27 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..1689 57..1745 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:07 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..1689 57..1745 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:15 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..1689 57..1745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:59 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..2254 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:39 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..2254 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:27 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 3..2256 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:07 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 1..2251 1..2251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:15 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
CG4332-RA 3..2256 1..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:13 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
X 13155040..13155989 1..950 100 -> Plus
X 13156069..13157372 951..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:13 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
X 13155040..13155989 1..950 100 -> Plus
X 13156069..13157372 951..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:13 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
X 13155040..13155989 1..950 100 -> Plus
X 13156069..13157372 951..2254 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:27 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13049073..13050022 1..950 100 -> Plus
arm_X 13050102..13051405 951..2254 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:10 Download gff for LD41462.complete
Subject Subject Range Query Range Percent Splice Strand
X 13163138..13164087 1..950 100 -> Plus
X 13164167..13165470 951..2254 100   Plus

LD41462.pep Sequence

Translation from 56 to 1744

> LD41462.pep
MALPSISTLLGVAFLAYIGHSIYQMSQLFTTLQCSGVPCYTSFLADRPRL
QLALFSSLSRSPIATEVRDLYKAKRFDYDQNFEHDFEVDVPLRTRRNGSL
YLHVVLALEGEPLEWRSLRRDGPTVVHTMSLTDYIVPRAEAFKLLGDSEK
GAAAAVQEKEKKKASTTGRPSTHIRSNVYVTLLNDLYSVSQADVPPEMAP
LIRVNRNQQILPILQTDTFNTRLKDLVPVTRNTTEFTFSFHYKPVGVGKL
RLMLLMEHATQALLTIGFATKDIDEVKGIFSDTNVYLLCGTIFVSSIHML
FDFLSFKNDVAFWRKKQSYEGLSSRTTMWRAFSQIVIFFYLLDENTSYLV
LVPVGLGTLIELWKCKKIFRLELSFSGLVRRKLEQVDRRNGDQAGVKSGQ
LAEEQKTDQFDRQGMRYLSYLLYPLCICGAVYSLLYQPHRSWYSWTLNSL
VNGVYAFGFLFMLPQLFVNYKLKSVAALPWRAFMYKAFNTFIDDFFAFII
TMPTAHRVACLRDDIVFIIYLYQRWLYPVDKSRLDTGLSISETPDTGNSS
SASIAANRKKRN*

LD41462.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21323-PA 567 GF21323-PA 1..567 1..562 2605 85.2 Plus
Dana\GF14857-PA 642 GF14857-PA 142..620 79..555 685 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17760-PA 562 GG17760-PA 1..562 1..562 2858 94.1 Plus
Dere\GG24389-PA 643 GG24389-PA 141..598 79..535 666 32.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24845-PA 581 GH24845-PA 1..559 1..544 2407 81.1 Plus
Dgri\GH11708-PA 651 GH11708-PA 129..586 79..535 712 34.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4332-PA 562 CG4332-PA 1..562 1..562 2908 100 Plus
CG3702-PB 641 CG3702-PB 141..596 79..535 662 31.6 Plus
CG3702-PA 641 CG3702-PA 141..596 79..535 662 31.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16179-PA 551 GI16179-PA 1..546 1..550 2312 77.3 Plus
Dmoj\GI16103-PA 643 GI16103-PA 131..585 82..535 694 33.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15873-PA 264 GL15873-PA 1..260 1..248 1038 74.6 Plus
Dper\GL16472-PA 652 GL16472-PA 143..600 79..535 715 33.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18115-PA 573 GA18115-PA 1..573 3..562 2493 81.1 Plus
Dpse\GA17625-PA 652 GA17625-PA 143..600 79..535 715 33.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11606-PA 561 GM11606-PA 1..561 1..562 2897 96.1 Plus
Dsec\GM11605-PA 296 GM11605-PA 6..264 2..297 837 64 Plus
Dsec\GM18101-PA 643 GM18101-PA 141..598 79..535 666 33 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17105-PA 562 GD17105-PA 1..562 1..562 2912 96.3 Plus
Dsim\GD17104-PA 281 GD17104-PA 1..258 1..303 1045 70.6 Plus
Dsim\GD11988-PA 643 GD11988-PA 141..598 79..535 666 33 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16669-PA 559 GJ16669-PA 1..559 1..562 2429 80.5 Plus
Dvir\GJ16195-PA 647 GJ16195-PA 127..584 79..535 692 33.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16182-PA 551 GK16182-PA 1..551 1..562 2462 82 Plus
Dwil\GK24449-PA 636 GK24449-PA 139..596 79..535 679 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17049-PA 561 GE17049-PA 1..561 1..562 2808 93.8 Plus
Dyak\GE14759-PA 643 GE14759-PA 141..598 79..535 663 33 Plus

LD41462.hyp Sequence

Translation from 56 to 1744

> LD41462.hyp
MALPSISTLLGVAFLAYIGHSIYQMSQLFTTLQCSGVPCYTSFLADRPRL
QLALFSSLSRSPIATEVRDLYKAKRFDYDQNFEHDFEVDVPLRTRRNGSL
YLHVVLALEGEPLEWRSLRRDGPTVVHTMSLTDYIVPRAEAFKLLGDSEK
GAAAAVQEKEKKKASTTGRPSTHIRSNVYVTLLNDLYSVSQADVPPEMAP
LIRVNRNQQILPILQTDTFNTRLKDLVPVTRNTTEFTFSFHYKPVGVGKL
RLMLLMEHATQALLTIGFATKDIDEVKGIFSDTNVYLLCGTIFVSSIHML
FDFLSFKNDVAFWRKKQSYEGLSSRTTMWRAFSQIVIFFYLLDENTSYLV
LVPVGLGTLIELWKCKKIFRLELSFSGLVRRKLEQVDRRNGDQAGVKSGQ
LAEEQKTDQFDRQGMRYLSYLLYPLCICGAVYSLLYQPHRSWYSWTLNSL
VNGVYAFGFLFMLPQLFVNYKLKSVAALPWRAFMYKAFNTFIDDFFAFII
TMPTAHRVACLRDDIVFIIYLYQRWLYPVDKSRLDTGLSISETPDTGNSS
SASIAANRKKRN*

LD41462.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4332-PA 562 CG4332-PA 1..562 1..562 2908 100 Plus
CG3702-PB 641 CG3702-PB 141..596 79..535 662 31.6 Plus
CG3702-PA 641 CG3702-PA 141..596 79..535 662 31.6 Plus