Clone LD41491 Report

Search the DGRC for LD41491

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:414
Well:91
Vector:pOT2
Associated Gene/TranscriptPex3-RA
Protein status:LD41491.pep: gold
Preliminary Size:1607
Sequenced Size:1567

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6859 2001-01-01 Release 2 assignment
CG6859 2001-07-04 Blastp of sequenced clone
CG6859 2003-01-01 Sim4 clustering to Release 3
CG6859 2008-04-29 Release 5.5 accounting
CG6859 2008-08-15 Release 5.9 accounting
CG6859 2008-12-18 5.12 accounting

Clone Sequence Records

LD41491.complete Sequence

1567 bp (1567 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051934

> LD41491.complete
AAACAGACGACGCAGTATGCGGCACCAAACAGAGAAATAACACATTTAGC
GACAACAACAAAGGATAAATCCATTCCATACATTCCAGAGCTAGATCCGA
TCCAAAGGCCAGCAATCGACCCGATAAGGCGGCGCACCAGATCCGAGTTT
CCGAGCAGGGGTATATAGGTCGCCGGTGGAGCGGGAAAAAGTGGGATATC
TGAACAGCAGTTGGCCTATTTCACACAGGAAGCGGATTCTAGTTGTCCAT
CCGGCAGAAGAGGCCTTTTCCAATCGTTAACATGCTGTCGCGCCTGCAGG
ACTTCTTGTCACGCCACCGGCGAAAGTTCATAGTGACCGGCGTTCTGGTG
GGCGGTACCATCTTTGCGGCACGTTATGCACAACGGCGATTCGTGGAGTT
CCAGGAGAAACAGGCCAGGGAATTCTTCGAGAGAACGCGGCGCACGACCC
ACTTTGAGTCGACGGAGAAGACGTGTAACCAGGTGATCCTAGGCATGGGC
GAGGAGATGTGCCAAGCGGTTCTGAGGGAGTGCAGCACGGACGAGCTGCT
CGAGCAGCTGCGCCAGAATCCCAAGAACAAGTTGGAACTTTGGGAGGACA
TGAAAATTGTGGCATTCACAAGACTGGCAACCTATGTCTACGCCTCCTCC
ATGCTGGTTATTGCGTTGAGGGTCCAGCTAAATCTTCTCGGTGGCTACAT
CTATCGGGACATCATGACGGAACAAAAACAAGTCACCGACGAGCTAAAGC
AGCAGTATCTCTCCCTCATCCGACACTTTATCACGGATTCGGGCATCCGG
GACTTAGCCCGTTACATTCGCACCCAGGTCATCGCAGTCACCAAGACCAT
ACCGCTCTCCGAACAGCTTTCCCTTAGCGACCTGGAGCAACTGTTTTGGT
CACTGCAAATGGCCATCAATGCGGACACTCGTCGGGATCCCAACTCGCGA
ATGAGCAAGTATCTGCTGCCCAGCCAGAATCCCAGTCATTCGCCGCTGCT
GCAAAAGATGGTCAACGAGACGCTGGATCTGTTGGAGAGCGAGGATGCCG
TTGGCGTGTGCTCGCACAATGTAAGCCGTGGTTTTGTGCTGGCCTGCGAT
GCCATCGCCGAAAGCATGGGCGAAACTTTGCAGCATCTGCCACAAGCTAA
AGTCCAAACGCAGCAAGAACAGAGCGTCAAGTTTAACCAGGCAGGAAGCT
TAGGCGCCAGCACCTCGAAGAGCCAAAACGGTCTGGAGAACAATAACTTG
CTGAACATCAACCGAGTGCTGTTGGCGTTGGCAAAGCTCATTCCTATCAT
CAGTGGTCTCACCTCGAGAGGCTTCGATACCACTTCGCGACCCCACAATC
TGCCCACCCAACTGCTAACCTTCTACGTGGTCGCCGAGAAGACAAAGACG
CTGGGGGCCAACGTCTACGAAAGCTTTAGCTCCGCTTAGAGGATCAACAA
AACTTGGATTATGCATCCGTGCATAGGCTAGGCTAAGACAATTGGAAAAT
TATAGTTTATATACTTGTATATTTTTAATAAGATCTGTATTCTCAGAAAA
AAAAAAAAAAAAAAAAA

LD41491.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6859-RA 1943 CG6859-RA 65..1612 1..1548 7740 100 Plus
CG6859.c 1858 CG6859.c 68..1529 87..1548 7310 100 Plus
CG6859.a 1541 CG6859.a 163..1541 168..1546 6895 100 Plus
CG6859.a 1541 CG6859.a 68..151 87..170 420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15134742..15136122 167..1546 6750 99.4 Plus
chr3L 24539361 chr3L 15134443..15134609 1..167 820 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15144667..15146048 167..1548 6910 100 Plus
3L 28110227 3L 15144368..15144537 1..170 850 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15137767..15139148 167..1548 6910 100 Plus
3L 28103327 3L 15137468..15137637 1..170 850 100 Plus
Blast to na_te.dros performed 2019-03-16 22:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1540..1580 1490..1530 115 75.6 Plus

LD41491.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:09 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15134443..15134610 1..168 98 -> Plus
chr3L 15134744..15136122 169..1546 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:56 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 1..1158 282..1439 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:42 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 1..1158 282..1439 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:44 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
Pex3-RA 1..1158 282..1439 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:09 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 1..1158 282..1439 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:15 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
Pex3-RA 1..1158 282..1439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:03 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 25..1570 1..1546 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:42 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 25..1570 1..1546 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:44 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
Pex3-RA 14..1559 1..1546 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:10 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
CG6859-RA 25..1570 1..1546 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:15 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
Pex3-RA 14..1559 1..1546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:09 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15144368..15144535 1..168 100 -> Plus
3L 15144669..15146046 169..1546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:09 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15144368..15144535 1..168 100 -> Plus
3L 15144669..15146046 169..1546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:09 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15144368..15144535 1..168 100 -> Plus
3L 15144669..15146046 169..1546 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:44 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15137468..15137635 1..168 100 -> Plus
arm_3L 15137769..15139146 169..1546 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:13 Download gff for LD41491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15137468..15137635 1..168 100 -> Plus
3L 15137769..15139146 169..1546 100   Plus

LD41491.pep Sequence

Translation from 281 to 1438

> LD41491.pep
MLSRLQDFLSRHRRKFIVTGVLVGGTIFAARYAQRRFVEFQEKQAREFFE
RTRRTTHFESTEKTCNQVILGMGEEMCQAVLRECSTDELLEQLRQNPKNK
LELWEDMKIVAFTRLATYVYASSMLVIALRVQLNLLGGYIYRDIMTEQKQ
VTDELKQQYLSLIRHFITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSD
LEQLFWSLQMAINADTRRDPNSRMSKYLLPSQNPSHSPLLQKMVNETLDL
LESEDAVGVCSHNVSRGFVLACDAIAESMGETLQHLPQAKVQTQQEQSVK
FNQAGSLGASTSKSQNGLENNNLLNINRVLLALAKLIPIISGLTSRGFDT
TSRPHNLPTQLLTFYVVAEKTKTLGANVYESFSSA*

LD41491.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23687-PA 386 GF23687-PA 1..386 1..385 1785 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15881-PA 385 GG15881-PA 1..385 1..385 1855 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14525-PA 377 GH14525-PA 1..377 1..385 1502 76.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pex3-PB 385 CG6859-PB 1..385 1..385 1933 100 Plus
Pex3-PA 385 CG6859-PA 1..385 1..385 1933 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13098-PA 376 GI13098-PA 1..376 1..385 1600 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24760-PA 386 GL24760-PA 1..386 1..385 1629 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19910-PA 386 GA19910-PA 1..386 1..385 1639 80.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25512-PA 385 GM25512-PA 1..385 1..385 2004 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14527-PA 385 GD14527-PA 1..385 1..385 2017 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13845-PA 376 GJ13845-PA 1..376 1..385 1589 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20400-PA 397 GK20400-PA 1..397 1..385 1638 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22224-PA 385 GE22224-PA 1..385 1..385 1988 96.1 Plus

LD41491.hyp Sequence

Translation from 281 to 1438

> LD41491.hyp
MLSRLQDFLSRHRRKFIVTGVLVGGTIFAARYAQRRFVEFQEKQAREFFE
RTRRTTHFESTEKTCNQVILGMGEEMCQAVLRECSTDELLEQLRQNPKNK
LELWEDMKIVAFTRLATYVYASSMLVIALRVQLNLLGGYIYRDIMTEQKQ
VTDELKQQYLSLIRHFITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSD
LEQLFWSLQMAINADTRRDPNSRMSKYLLPSQNPSHSPLLQKMVNETLDL
LESEDAVGVCSHNVSRGFVLACDAIAESMGETLQHLPQAKVQTQQEQSVK
FNQAGSLGASTSKSQNGLENNNLLNINRVLLALAKLIPIISGLTSRGFDT
TSRPHNLPTQLLTFYVVAEKTKTLGANVYESFSSA*

LD41491.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pex3-PB 385 CG6859-PB 1..385 1..385 1933 100 Plus
Pex3-PA 385 CG6859-PA 1..385 1..385 1933 100 Plus