Clone LD41494 Report

Search the DGRC for LD41494

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:414
Well:94
Vector:pOT2
Associated Gene/TranscriptCG9911-RA
Protein status:LD41494.pep: gold
Preliminary Size:1578
Sequenced Size:1496

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9911 2001-01-01 Release 2 assignment
CG9911 2003-01-01 Sim4 clustering to Release 3
CG9911 2003-01-16 Blastp of sequenced clone
CG9911 2008-04-29 Release 5.5 accounting
CG9911 2008-08-15 Release 5.9 accounting
CG9911 2008-12-18 5.12 accounting

Clone Sequence Records

LD41494.complete Sequence

1496 bp (1496 high quality bases) assembled on 2003-01-16

GenBank Submission: AY058697

> LD41494.complete
CAACACTGGCCAGCCGATAAAATCAACCAAAAATTTGTAAAACTTAATAA
TTGTGCGTACGTTTGCATTCCATTCCAGCTGATGTGTAACTGAAATCAGA
AAAAAAGAGAACCGATCGCTTGGACTCTCCGCCGGTGCACGCAATTCTAC
GCCCACTCCTCGCCAGCCGCATTCGCCATTCGGAAGCCGAACAAGAATGT
TTGGAGCCAGAATCGGAATCGGAAAGCTTGGGCCGTGTGTGGCCCTAGTT
GCGATTCTACAGCTACTCCAGTACACACAGCCGGCCGATGCCGCCGGAGC
CGTGCCCATGACCAGTGATAATATCGATATGACCCTAGCGTCTAATGAAT
TGGTTTTCCTTAATTTTTATGCGGAGTGGTGTCGGTTTAGTAATATTTTA
GCACCTATATTCGCGGAAGCTGCAGATAAGATTAAAGAGGAGTTTCCAGA
GGCTGGAAAAGTGGTGCTAGGCAAGGTCGATTGCGACAAGGAAACGGCCA
TCGCGTCCCGTTTCCACATAAACAAGTATCCAACATTGAAAATTGTACGC
AATGGGCAGCTCAGCAAGCGCGAATACCGAGGACAGCGTTCAGCCGAAGC
GTTCCTCGAGTTCGTCAAGAAGCAGCTGGAGGATCCCATTCAGGAGTTCA
AATCCCTGAAGGATCTGGAGAACCTGGACTCGAAGAAGCGCCTCATTCTG
GGCTACTTCGATCGTAGGGACCAGCCAGAGTACGACATATTCCGCAAGGT
GGCGACAAATCTGAAGGAAGACTGCCAGTTCCACGTGGGCTTCGGAGATG
CCGCCCAGGCCATGCATCCACCAGGTACACCTATCATAGTATTTAGACCT
GATGTAGCTCTGTCTCATGAGAACGATGAGACCTACACTGGCAGCCTACA
AAATTTCGATGAGCTCAAAATTTGGGTCCAAGAGAAGTGTGTACCCCTGG
TGCGGGAAATAACATTTGAGAATGCAGAGGAACTTACGGAGGAGGGTCTG
CCGTTCCTAATTCTCTTCCACCACCCAACCGATCATAATTCTATCAAGGA
TTACAAGTCGATCATTGAGCGTCAATTGCTGGATGAGAAACAGAACGTCA
ACTTTTTGACCGCCGATGGCAAGCGATTCGCGCATCCTCTGCACCATCTG
GGTAAATCCGAGGATGACTTGCCCTTGATTGCCATCGACTCGTTCAAGCA
CATGTATCTGTTCCCCCACTTCAGTGACATGTACTCGCCGGGTAAGCTGA
AGCAGTTCCTTCAGGATCTCTACAGTGGCAAGCTGCACAGGGAATTTCAT
TACGGGCCGGATCCCTCAAATGATATTGAACCTGACCCACACACTGGCAA
GGGTACATCGCCACCAGAGTCCAAATTCAAGGAACTTGGCCCATCCAAGC
ATCGCTACACCCTGCTAGAAAAAGATGAACTGTAATATAATAATAATAAT
GTATATTGAAAATAAAAGAAAATAATACAAAAAAAAAAAAAAAAAA

LD41494.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-RA 1523 CG9911-RA 36..1518 1..1483 7415 100 Plus
CG9911-RB 1426 CG9911-RB 26..1426 78..1478 7005 100 Plus
CG9911-RD 1477 CG9911-RD 78..1477 79..1478 7000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16184434..16184831 826..429 1990 100 Minus
chrX 22417052 chrX 16184099..16184368 1091..822 1350 100 Minus
chrX 22417052 chrX 16186025..16186277 253..1 1265 100 Minus
chrX 22417052 chrX 16183820..16184024 1296..1092 1010 99.5 Minus
chrX 22417052 chrX 16183564..16183754 1478..1288 940 99.5 Minus
chrX 22417052 chrX 16184934..16185027 430..337 470 100 Minus
chrX 22417052 chrX 16185763..16185848 338..253 430 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16294723..16295120 826..429 1990 100 Minus
X 23542271 X 16294388..16294657 1091..822 1350 100 Minus
X 23542271 X 16296310..16296562 253..1 1265 100 Minus
X 23542271 X 16294109..16294313 1296..1092 1010 99.5 Minus
X 23542271 X 16293848..16294043 1483..1288 980 100 Minus
X 23542271 X 16295223..16295316 430..337 470 100 Minus
X 23542271 X 16296047..16296132 338..253 430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16302821..16303218 826..429 1990 100 Minus
X 23527363 X 16302486..16302755 1091..822 1350 100 Minus
X 23527363 X 16304408..16304660 253..1 1265 100 Minus
X 23527363 X 16302207..16302411 1296..1092 1010 99.5 Minus
X 23527363 X 16301946..16302141 1483..1288 980 100 Minus
X 23527363 X 16303321..16303414 430..337 470 100 Minus
X 23527363 X 16304145..16304230 338..253 430 100 Minus
Blast to na_te.dros performed 2019-03-15 22:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 292..380 16..108 112 62.4 Plus

LD41494.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:49 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16184099..16184365 825..1091 100 <- Minus
chrX 16186025..16186277 1..253 100   Minus
chrX 16184436..16184829 431..824 100 <- Minus
chrX 16184934..16185025 339..430 100 <- Minus
chrX 16185763..16185847 254..338 100 <- Minus
chrX 16183611..16183751 1291..1431 99 <- Minus
chrX 16183826..16184024 1092..1290 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:58 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1239 197..1435 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:45 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1239 197..1435 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:42 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 1..1239 197..1435 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:44 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1239 197..1435 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:31 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 1..1239 197..1435 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:13 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1458 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:45 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1458 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:42 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 26..1483 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:44 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1458 1..1458 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:31 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 26..1483 1..1458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:49 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
X 16294725..16295118 431..824 100 <- Minus
X 16293873..16294040 1291..1458 100 <- Minus
X 16294115..16294313 1092..1290 100 <- Minus
X 16294388..16294654 825..1091 100 <- Minus
X 16295223..16295314 339..430 100 <- Minus
X 16296047..16296131 254..338 100 <- Minus
X 16296310..16296562 1..253 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:49 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
X 16294725..16295118 431..824 100 <- Minus
X 16293873..16294040 1291..1458 100 <- Minus
X 16294115..16294313 1092..1290 100 <- Minus
X 16294388..16294654 825..1091 100 <- Minus
X 16295223..16295314 339..430 100 <- Minus
X 16296047..16296131 254..338 100 <- Minus
X 16296310..16296562 1..253 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:49 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
X 16294725..16295118 431..824 100 <- Minus
X 16293873..16294040 1291..1458 100 <- Minus
X 16294115..16294313 1092..1290 100 <- Minus
X 16294388..16294654 825..1091 100 <- Minus
X 16295223..16295314 339..430 100 <- Minus
X 16296047..16296131 254..338 100 <- Minus
X 16296310..16296562 1..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:42 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16188758..16189151 431..824 100 <- Minus
arm_X 16187906..16188073 1291..1458 100 <- Minus
arm_X 16188148..16188346 1092..1290 100 <- Minus
arm_X 16188421..16188687 825..1091 100 <- Minus
arm_X 16189256..16189347 339..430 100 <- Minus
arm_X 16190080..16190164 254..338 100 <- Minus
arm_X 16190343..16190595 1..253 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:53 Download gff for LD41494.complete
Subject Subject Range Query Range Percent Splice Strand
X 16302486..16302752 825..1091 100 <- Minus
X 16302823..16303216 431..824 100 <- Minus
X 16303321..16303412 339..430 100 <- Minus
X 16304145..16304229 254..338 100 <- Minus
X 16304408..16304660 1..253 100   Minus
X 16301971..16302138 1291..1458 100 <- Minus
X 16302213..16302411 1092..1290 100 <- Minus

LD41494.pep Sequence

Translation from 196 to 1434

> LD41494.pep
MFGARIGIGKLGPCVALVAILQLLQYTQPADAAGAVPMTSDNIDMTLASN
ELVFLNFYAEWCRFSNILAPIFAEAADKIKEEFPEAGKVVLGKVDCDKET
AIASRFHINKYPTLKIVRNGQLSKREYRGQRSAEAFLEFVKKQLEDPIQE
FKSLKDLENLDSKKRLILGYFDRRDQPEYDIFRKVATNLKEDCQFHVGFG
DAAQAMHPPGTPIIVFRPDVALSHENDETYTGSLQNFDELKIWVQEKCVP
LVREITFENAEELTEEGLPFLILFHHPTDHNSIKDYKSIIERQLLDEKQN
VNFLTADGKRFAHPLHHLGKSEDDLPLIAIDSFKHMYLFPHFSDMYSPGK
LKQFLQDLYSGKLHREFHYGPDPSNDIEPDPHTGKGTSPPESKFKELGPS
KHRYTLLEKDEL*

LD41494.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19631-PA 409 GF19631-PA 1..409 1..412 2038 93.4 Plus
Dana\GF17308-PA 408 GF17308-PA 9..408 17..412 1044 49.4 Plus
Dana\GF14074-PA 397 GF14074-PA 39..397 42..412 806 45.3 Plus
Dana\GF10739-PA 496 GF10739-PA 28..353 34..365 261 26 Plus
Dana\GF11803-PA 489 GF11803-PA 4..365 17..379 224 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19336-PA 412 GG19336-PA 1..412 1..412 2176 98.5 Plus
Dere\GG25226-PA 410 GG25226-PA 12..410 17..412 1063 50.9 Plus
Dere\GG13681-PA 496 GG13681-PA 28..353 34..365 245 25.4 Plus
Dere\GG22623-PA 489 GG22623-PA 5..350 18..364 202 24.7 Plus
Dere\GG18439-PA 418 GG18439-PA 34..151 28..149 168 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12152-PA 415 GH12152-PA 9..415 11..412 1853 84.1 Plus
Dgri\GH11313-PA 386 GH11313-PA 2..386 20..412 887 45.2 Plus
Dgri\GH19278-PA 391 GH19278-PA 20..386 30..406 794 43.1 Plus
Dgri\GH23529-PA 305 GH23529-PA 3..305 102..412 700 45.5 Plus
Dgri\GH16892-PA 493 GH16892-PA 4..349 17..365 251 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-PA 412 CG9911-PA 1..412 1..412 2180 100 Plus
CG9911-PB 412 CG9911-PB 1..412 1..412 2180 100 Plus
CG9911-PD 412 CG9911-PD 1..412 1..412 2180 100 Plus
CG9911-PC 375 CG9911-PC 1..375 38..412 1994 100 Plus
CG10029-PA 410 CG10029-PA 4..410 8..412 1040 49.9 Plus
Pdi-PE 496 CG6988-PE 28..351 34..363 279 26 Plus
Pdi-PA 496 CG6988-PA 28..351 34..363 279 26 Plus
ERp60-PA 489 CG8983-PA 30..365 41..379 232 23.9 Plus
CaBP1-PB 433 CG5809-PB 20..433 26..412 177 23.7 Plus
CaBP1-PA 433 CG5809-PA 20..433 26..412 177 23.7 Plus
prtp-PC 416 CG1837-PC 31..149 27..149 162 26.8 Plus
prtp-PB 416 CG1837-PB 31..149 27..149 162 26.8 Plus
prtp-PA 416 CG1837-PA 31..149 27..149 162 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10898-PA 408 GI10898-PA 9..408 11..412 1888 88.1 Plus
Dmoj\GI17822-PA 401 GI17822-PA 26..401 33..412 799 41.8 Plus
Dmoj\GI12238-PA 493 GI12238-PA 4..349 17..365 261 25 Plus
Dmoj\GI19593-PA 488 GI19593-PA 4..364 20..379 222 25.3 Plus
Dmoj\GI15325-PA 406 GI15325-PA 30..236 28..238 170 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21325-PA 411 GL21325-PA 1..411 1..412 1955 92 Plus
Dper\GL12183-PA 411 GL12183-PA 6..411 11..412 1044 49.1 Plus
Dper\GL26391-PA 357 GL26391-PA 5..346 15..351 738 46.6 Plus
Dper\GL13169-PA 181 GL13169-PA 2..181 226..412 427 53.5 Plus
Dper\GL25779-PA 493 GL25779-PA 25..350 34..365 240 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22116-PA 411 GA22116-PA 1..411 1..412 1955 92 Plus
Dpse\GA10017-PA 411 GA10017-PA 1..411 6..412 1052 48.6 Plus
Dpse\GA28841-PA 401 GA28841-PA 5..401 15..412 911 48.8 Plus
Dpse\GA20009-PA 493 GA20009-PA 25..388 34..408 244 24.6 Plus
Dpse\GA24137-PB 490 GA24137-PB 3..182 14..195 201 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13413-PA 412 GM13413-PA 1..412 1..412 2193 99.8 Plus
Dsec\GM10486-PA 367 GM10486-PA 4..367 8..412 848 42.6 Plus
Dsec\GM24501-PA 496 GM24501-PA 28..353 34..365 251 25.7 Plus
Dsec\GM20403-PA 488 GM20403-PA 4..364 18..379 216 24 Plus
Dsec\GM17901-PA 433 GM17901-PA 3..418 10..391 169 24.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15757-PA 407 GD15757-PA 1..407 1..412 2150 98.3 Plus
Dsim\GD19485-PA 410 GD19485-PA 4..410 8..412 1047 49.9 Plus
Dsim\GD12572-PA 496 GD12572-PA 28..353 34..365 251 25.7 Plus
Dsim\ERp60-PA 489 GD25877-PA 5..365 15..379 215 23.7 Plus
Dsim\GD17042-PA 416 GD17042-PA 16..235 17..238 164 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18544-PA 410 GJ18544-PA 9..410 11..412 1907 88.1 Plus
Dvir\GJ10239-PA 397 GJ10239-PA 7..397 15..412 928 47.8 Plus
Dvir\GJ17318-PA 421 GJ17318-PA 53..421 38..412 806 42.7 Plus
Dvir\GJ11469-PA 493 GJ11469-PA 4..349 17..365 263 25.3 Plus
Dvir\GJ18390-PA 489 GJ18390-PA 2..365 17..379 222 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25202-PA 409 GK25202-PA 10..409 11..412 1941 90.5 Plus
Dwil\GK23703-PA 365 GK23703-PA 1..365 47..412 1767 90.4 Plus
Dwil\GK15508-PA 390 GK15508-PA 16..390 38..412 873 47.9 Plus
Dwil\GK19176-PA 395 GK19176-PA 9..395 15..412 752 39.6 Plus
Dwil\GK20490-PA 497 GK20490-PA 6..389 14..408 237 23.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11008-PA 412 GE11008-PA 1..412 1..412 2176 98.8 Plus
Dyak\GE11116-PA 410 GE11116-PA 12..410 17..412 1047 50.9 Plus
Dyak\GE25795-PA 410 GE25795-PA 12..410 17..412 1037 50.1 Plus
Dyak\GE19977-PA 496 GE19977-PA 28..353 34..365 251 25.7 Plus
Dyak\GE13492-PA 489 GE13492-PA 5..350 15..364 203 23.8 Plus

LD41494.hyp Sequence

Translation from 196 to 1434

> LD41494.hyp
MFGARIGIGKLGPCVALVAILQLLQYTQPADAAGAVPMTSDNIDMTLASN
ELVFLNFYAEWCRFSNILAPIFAEAADKIKEEFPEAGKVVLGKVDCDKET
AIASRFHINKYPTLKIVRNGQLSKREYRGQRSAEAFLEFVKKQLEDPIQE
FKSLKDLENLDSKKRLILGYFDRRDQPEYDIFRKVATNLKEDCQFHVGFG
DAAQAMHPPGTPIIVFRPDVALSHENDETYTGSLQNFDELKIWVQEKCVP
LVREITFENAEELTEEGLPFLILFHHPTDHNSIKDYKSIIERQLLDEKQN
VNFLTADGKRFAHPLHHLGKSEDDLPLIAIDSFKHMYLFPHFSDMYSPGK
LKQFLQDLYSGKLHREFHYGPDPSNDIEPDPHTGKGTSPPESKFKELGPS
KHRYTLLEKDEL*

LD41494.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-PA 412 CG9911-PA 1..412 1..412 2180 100 Plus
CG9911-PB 412 CG9911-PB 1..412 1..412 2180 100 Plus
CG9911-PD 412 CG9911-PD 1..412 1..412 2180 100 Plus
CG9911-PC 375 CG9911-PC 1..375 38..412 1994 100 Plus
CG10029-PB 410 CG10029-PB 4..410 8..412 1040 49.9 Plus