Clone LD41558 Report

Search the DGRC for LD41558

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:415
Well:58
Vector:pOT2
Associated Gene/Transcriptl(2)34Fd-RA
Protein status:LD41558.pep: gold
Preliminary Size:2210
Sequenced Size:2314

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7516 2001-01-01 Release 2 assignment
CG7516 2001-07-04 Blastp of sequenced clone
CG7516 2003-01-01 Sim4 clustering to Release 3
CG7516 2008-04-29 Release 5.5 accounting
CG7516 2008-08-15 Release 5.9 accounting
CG7516 2008-12-18 5.12 accounting

Clone Sequence Records

LD41558.complete Sequence

2314 bp (2314 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051935

> LD41558.complete
GGCGCACGTGTTGCGGACTTCGTTTGTTTATGTTTTAATTTTGAGCAAAA
ATCGTCCCTCAAGATGTTCGTAAACGAAGTTAACGATGTGAAGATCTACA
ACCTGAGCGCCGGCAAGTCGGTGCCAGATTGGCTGACGGATCGGCGAAAG
CGGTCACAGCTCATGAAAAAAGTGGACTCCCGGAGACAGATCGAGCTCAT
CCAGGACTTCGATATGCCCGGCGTCTGCACCAGCATCCGCATGAGTCCCG
ACCAACAGTACATCCTGGCCACCGGCACTTACAAGCCGCGCGTCAAGTGC
TTCGAGGTGTCCAACCTGTCTATCAAATTCGAGCGCTGCTTCGACGCCGA
GGTGACCACCTTTGAGGTGATTAGCGACGACTACAGCAAGATGGTGTTCC
TGCAATGCGATCGCTATGTGGAGATCCATGCGGCCCACGGGCGGCACTAC
AGACTAAGGATACCGCGCTTTGGACGCGACATGAAGTACCACAAGCCCAG
CTGCGACATGTTCATCGTGGGAGTGGGCAGGGACATTTTCCGACTCAATT
TGGAGCGCGGTCAGTTCCTGCAACCCTTTGAAACGGATGGCAGCTGCCTG
AACGCCTGTGAAGTGAATCCAGAGCACCATCTTCTGGTAGCCGGTACCAA
AGAAGGCACCGTAGAAGCCTGGGATCCACGTACCAAGCAACGATGTTCAA
CTTTGGATGTAGCCATGAAGTTGCCGGGCGTCAAGGAGTTTCCATCGGTC
ACGGCCCTCAAATTCCGGAACGGCTTGCACATGGGAGTGGGAACTGCTTC
GGGACACGTGCTGATCTACGACATTCGCGCCAAGCAACCGTTGCTGGTGA
AGAATCATCTGAATCGACTGCCCATCAAGCGTCTGGCCTTTAATCCGGCT
CAGAATGCCGTCTATAGTTTGGACGAGGCTACACTGAAGCTGTGGGACGA
GCAGACAGGCAAGCAGATCGCCTACGTTGAGTCGACTTCGTCATTCAACG
ATTTTTGCACCATTCCCGACACGGGCATGTTCTTCGTAGCCCAGGAGGAT
GTTAAGATGATGACCTATTATGTGCCTGCAATGGGTCCAGCACCCCGATG
GTGCTCGTTCTTGGATAACCTCACCGAGGAGATCGAATCGGAGGTCGTGG
AGAATGTGTACGATGACTATCAGTTCGTCACAGCGAAGGAGCTGGCTGAA
TTGGGAATGGAGCATCTCGTTGGCAGCAATCTTCTTAAGGGTTATATGCA
CGGATACTTTATGGACGCAAGATTGTACAACAAAGCCAAGGCAGTTGTGG
AACCCTTCGCCTTCGACCGCTTCCGCAAAGATAAGATCCGCCAAGAAATC
GAAAGTGAGCGCAAGTCCCGCCTGCAAATCGAATCCAAGCTGCCCAAAGT
CAACAAAGAGTTGGCTCTCAAGATTATGGACGAGCAAGCCAATCCTTCCA
ACAGTGCCAAGCAGCGAAATGTGCCCAGCCTGCTGGAGGACTCGCGTTTC
AAGGCCATGTTTGAGAATGCCGACTTTGAAGTTAACAAGTCTGCCGAGGA
GTATCGTCTGCTGGCTCCTGTTCTGAACCGTCTGGATAAATCCAAGGCCA
AGGAACTCAAGAAGCGCGTGGAGGTGGCTCATGTGGCGGAGTTGCACGCG
GACGAGGCACAGCAGCGCGAGGAAAGCGATAATGACGAGGACCTATTTGG
CTTCGAGAAGAGCGATGGCGAAACGAAGGATGACAGCGGAGATGAGGCCT
CATCTGACGATGATGACCGAAGGGAGTATGTCAAGGAAATGAAGCAGGCG
TACAAACAGGTGAAGCGACAACGTGAGGAAGAGGAGGAGCTAGAAGATGA
CGAGCAGCAGCCGGATGAAATTTCGGATACCGCAAAAAGACCGCAGACGA
ATGGACACAGCCAACAACCCACCACCAATGGCAACCGTTTCACCATGACC
CCCTTGGATCAACATCAAGGCAGCAGTCTACTGCAGCAGCGCATCAAAAA
AGCGAGCTTGCAGGATCGCGTAAGGGTCATGTCCCAGCTGGAGGGCCAGG
TCACCAATGTGGGTCGCTCCCTGGGCAATCGTCAGATGACATTCGAAGTG
AACAAGCAGAAGAAGTCACAGTTCCATGCCAAGAAGCGCGAGGCGGAGAT
GAAAAAGCATCGCGAGGAGCGAAGGAGCATTGTCAGACCCATTAAGTCGC
TGAGACTAAAGAAAGTTAATTTTAAGTAGACGAACAATTGCAATTAGTTC
TGTACATAAATTCATATGTTAAATTAATCTACATATTTATTTTAACAAAA
AAAAAAAAAAAAAA

LD41558.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7516-RA 2385 CG7516-RA 47..2344 1..2298 11490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14351394..14352437 2296..1253 5220 100 Minus
chr2L 23010047 chr2L 14352497..14353219 1253..531 3615 100 Minus
chr2L 23010047 chr2L 14353271..14353673 532..130 2015 100 Minus
chr2L 23010047 chr2L 14353732..14353860 129..1 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14352592..14353637 2298..1253 5230 100 Minus
2L 23513712 2L 14353697..14354419 1253..531 3615 100 Minus
2L 23513712 2L 14354471..14354873 532..130 2015 100 Minus
2L 23513712 2L 14354932..14355060 129..1 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14352592..14353637 2298..1253 5230 100 Minus
2L 23513712 2L 14353697..14354419 1253..531 3615 100 Minus
2L 23513712 2L 14354471..14354873 532..130 2015 100 Minus
2L 23513712 2L 14354932..14355060 129..1 645 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:00:48 has no hits.

LD41558.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:27 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14351394..14352436 1254..2296 100 <- Minus
chr2L 14352497..14353218 532..1253 100 <- Minus
chr2L 14353272..14353673 130..531 100 <- Minus
chr2L 14353732..14353860 1..129 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:23:59 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7516-RA 1..2166 64..2229 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:43 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 1..2166 64..2229 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:45:59 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 1..2166 64..2229 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:11 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7516-RA 1..2166 64..2229 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:04 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 1..2166 64..2229 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:05 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7516-RA 21..2316 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:43 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 21..2316 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:59 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 26..2321 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:11 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
CG7516-RA 21..2316 1..2296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:04 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fd-RA 26..2321 1..2296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:27 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14352594..14353636 1254..2296 100 <- Minus
2L 14353697..14354418 532..1253 100 <- Minus
2L 14354472..14354873 130..531 100 <- Minus
2L 14354932..14355060 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:27 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14352594..14353636 1254..2296 100 <- Minus
2L 14353697..14354418 532..1253 100 <- Minus
2L 14354472..14354873 130..531 100 <- Minus
2L 14354932..14355060 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:27 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14352594..14353636 1254..2296 100 <- Minus
2L 14353697..14354418 532..1253 100 <- Minus
2L 14354472..14354873 130..531 100 <- Minus
2L 14354932..14355060 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:59 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14352594..14353636 1254..2296 100 <- Minus
arm_2L 14353697..14354418 532..1253 100 <- Minus
arm_2L 14354472..14354873 130..531 100 <- Minus
arm_2L 14354932..14355060 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:14 Download gff for LD41558.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14352594..14353636 1254..2296 100 <- Minus
2L 14353697..14354418 532..1253 100 <- Minus
2L 14354472..14354873 130..531 100 <- Minus
2L 14354932..14355060 1..129 100   Minus

LD41558.hyp Sequence

Translation from 0 to 2228

> LD41558.hyp
GARVADFVCLCFNFEQKSSLKMFVNEVNDVKIYNLSAGKSVPDWLTDRRK
RSQLMKKVDSRRQIELIQDFDMPGVCTSIRMSPDQQYILATGTYKPRVKC
FEVSNLSIKFERCFDAEVTTFEVISDDYSKMVFLQCDRYVEIHAAHGRHY
RLRIPRFGRDMKYHKPSCDMFIVGVGRDIFRLNLERGQFLQPFETDGSCL
NACEVNPEHHLLVAGTKEGTVEAWDPRTKQRCSTLDVAMKLPGVKEFPSV
TALKFRNGLHMGVGTASGHVLIYDIRAKQPLLVKNHLNRLPIKRLAFNPA
QNAVYSLDEATLKLWDEQTGKQIAYVESTSSFNDFCTIPDTGMFFVAQED
VKMMTYYVPAMGPAPRWCSFLDNLTEEIESEVVENVYDDYQFVTAKELAE
LGMEHLVGSNLLKGYMHGYFMDARLYNKAKAVVEPFAFDRFRKDKIRQEI
ESERKSRLQIESKLPKVNKELALKIMDEQANPSNSAKQRNVPSLLEDSRF
KAMFENADFEVNKSAEEYRLLAPVLNRLDKSKAKELKKRVEVAHVAELHA
DEAQQREESDNDEDLFGFEKSDGETKDDSGDEASSDDDDRREYVKEMKQA
YKQVKRQREEEEELEDDEQQPDEISDTAKRPQTNGHSQQPTTNGNRFTMT
PLDQHQGSSLLQQRIKKASLQDRVRVMSQLEGQVTNVGRSLGNRQMTFEV
NKQKKSQFHAKKREAEMKKHREERRSIVRPIKSLRLKKVNFK*

LD41558.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fd-PA 721 CG7516-PA 1..721 22..742 3742 100 Plus

LD41558.pep Sequence

Translation from 63 to 2228

> LD41558.pep
MFVNEVNDVKIYNLSAGKSVPDWLTDRRKRSQLMKKVDSRRQIELIQDFD
MPGVCTSIRMSPDQQYILATGTYKPRVKCFEVSNLSIKFERCFDAEVTTF
EVISDDYSKMVFLQCDRYVEIHAAHGRHYRLRIPRFGRDMKYHKPSCDMF
IVGVGRDIFRLNLERGQFLQPFETDGSCLNACEVNPEHHLLVAGTKEGTV
EAWDPRTKQRCSTLDVAMKLPGVKEFPSVTALKFRNGLHMGVGTASGHVL
IYDIRAKQPLLVKNHLNRLPIKRLAFNPAQNAVYSLDEATLKLWDEQTGK
QIAYVESTSSFNDFCTIPDTGMFFVAQEDVKMMTYYVPAMGPAPRWCSFL
DNLTEEIESEVVENVYDDYQFVTAKELAELGMEHLVGSNLLKGYMHGYFM
DARLYNKAKAVVEPFAFDRFRKDKIRQEIESERKSRLQIESKLPKVNKEL
ALKIMDEQANPSNSAKQRNVPSLLEDSRFKAMFENADFEVNKSAEEYRLL
APVLNRLDKSKAKELKKRVEVAHVAELHADEAQQREESDNDEDLFGFEKS
DGETKDDSGDEASSDDDDRREYVKEMKQAYKQVKRQREEEEELEDDEQQP
DEISDTAKRPQTNGHSQQPTTNGNRFTMTPLDQHQGSSLLQQRIKKASLQ
DRVRVMSQLEGQVTNVGRSLGNRQMTFEVNKQKKSQFHAKKREAEMKKHR
EERRSIVRPIKSLRLKKVNFK*

LD41558.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15016-PA 721 GF15016-PA 1..721 1..721 3560 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24261-PA 583 GG24261-PA 1..356 1..356 1994 99.2 Plus
Dere\GG24261-PA 583 GG24261-PA 337..583 470..721 1108 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10401-PA 724 GH10401-PA 1..724 1..721 3419 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fd-PA 721 CG7516-PA 1..721 1..721 3742 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17381-PA 724 GI17381-PA 1..724 1..721 3225 85.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21050-PA 730 GL21050-PA 1..730 1..721 3527 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20407-PA 730 GA20407-PA 1..730 1..721 3540 90.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14860-PA 721 GM14860-PA 1..721 1..721 3851 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22010-PA 823 GD22010-PA 1..583 1..583 3173 99.1 Plus
Dsim\GD22010-PA 823 GD22010-PA 582..823 480..721 1147 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18057-PA 724 GJ18057-PA 1..724 1..721 3361 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18113-PA 718 GK18113-PA 1..718 1..721 3422 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25037-PA 723 GE25037-PA 1..723 1..721 3811 97.8 Plus