BDGP Sequence Production Resources |
Search the DGRC for LD41588
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 415 |
Well: | 88 |
Vector: | pOT2 |
Associated Gene/Transcript | RnrS-RA |
Protein status: | LD41588.pep: gold |
Preliminary Size: | 1621 |
Sequenced Size: | 1593 |
Gene | Date | Evidence |
---|---|---|
CG8975 | 2001-01-01 | Release 2 assignment |
CG8975 | 2001-07-04 | Blastp of sequenced clone |
CG8975 | 2003-01-01 | Sim4 clustering to Release 3 |
RnrS | 2008-04-29 | Release 5.5 accounting |
RnrS | 2008-08-15 | Release 5.9 accounting |
RnrS | 2008-12-18 | 5.12 accounting |
1593 bp (1593 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051936
> LD41588.complete CAACTTTCAAACTGTACACTTAATACACGTCGTGGTTTAAGTGAATTTTA CCAGAGAATCAGAGAAGCGCCCCTACCTGCTAATAATAATCCATTCAAAA ACATCTCAAATGGCGTCCAAGGAAAACATTGCTGACAACATGGAGAAGTT CTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACCAACAACG TTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGCCAAGGAG TCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCATGGAGAA GTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGCGAGAATC CCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTGGCAGATG TACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTC CAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGCCATTTCA TCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTAAACGAG AACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGTTG CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACA GTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTG TTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGC CCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGCATCATCG CCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATT TTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGA GCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGT TCCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATC CGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCCTGCCCGT CAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCG TAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACC AAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAA CTTTTTTGAGAAGAAGGTGGGGGAGTACCAGCGCATGGGAGTGGTCAGCA ACCCCCTGGACAACGTGTTCACCCTGGACGCGGATTTCTAGGGCTGGCCC CGGACATCATTGTTGCAATTTAAACCTCTCAAGGGCTGGCTTCTCATCCT TTATATTTTAATCTGACGGCAATTATATGTAGTCCGTTTTAATTTTAACA TAGGCTAAGAACAATCACAGACCTTCAACACATTCACCTAATCATTTACT TGGACCTCCAATTACGTTTATAATACTATCTACACACTTGACTTTTACGA GGAGCGTACCTTTTCCGAATTCATTGTACATACAACATTTTAAATAAATT TATACATAGACAATTATTAAGCACTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RnrS-RA | 1802 | RnrS-RA | 191..1766 | 1..1576 | 7880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7870362..7871529 | 1575..408 | 5795 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 7872035..7872286 | 410..159 | 1260 | 100 | Minus |
chr2R | 21145070 | chr2R | 7872433..7872592 | 160..1 | 785 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11983144..11984312 | 1576..408 | 5845 | 100 | Minus |
2R | 25286936 | 2R | 11984818..11985069 | 410..159 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 11985216..11985375 | 160..1 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11984343..11985511 | 1576..408 | 5845 | 100 | Minus |
2R | 25260384 | 2R | 11986017..11986268 | 410..159 | 1260 | 100 | Minus |
2R | 25260384 | 2R | 11986415..11986574 | 160..1 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 2318..2398 | 1122..1200 | 112 | 61.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7872433..7872592 | 1..160 | 99 | Minus | |
chr2R | 7870362..7871527 | 410..1575 | 99 | <- | Minus |
chr2R | 7872036..7872284 | 161..409 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 1..1182 | 110..1291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 1..1182 | 110..1291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 1..1182 | 110..1291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 1..1182 | 110..1291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 1..1182 | 110..1291 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 69..1643 | 1..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 69..1643 | 1..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 19..1593 | 1..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 69..1643 | 1..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RnrS-RA | 19..1593 | 1..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11983145..11984310 | 410..1575 | 100 | <- | Minus |
2R | 11984819..11985067 | 161..409 | 100 | <- | Minus |
2R | 11985216..11985375 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11983145..11984310 | 410..1575 | 100 | <- | Minus |
2R | 11984819..11985067 | 161..409 | 100 | <- | Minus |
2R | 11985216..11985375 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11983145..11984310 | 410..1575 | 100 | <- | Minus |
2R | 11984819..11985067 | 161..409 | 100 | <- | Minus |
2R | 11985216..11985375 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7870650..7871815 | 410..1575 | 100 | <- | Minus |
arm_2R | 7872324..7872572 | 161..409 | 100 | <- | Minus |
arm_2R | 7872721..7872880 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11984344..11985509 | 410..1575 | 100 | <- | Minus |
2R | 11986018..11986266 | 161..409 | 100 | <- | Minus |
2R | 11986415..11986574 | 1..160 | 100 | Minus |
Translation from 109 to 1290
> LD41588.pep MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11796-PA | 393 | GF11796-PA | 1..393 | 1..393 | 1903 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22616-PA | 393 | GG22616-PA | 1..393 | 1..393 | 2047 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20400-PA | 393 | GH20400-PA | 6..393 | 1..393 | 1854 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RnrS-PA | 393 | CG8975-PA | 1..393 | 1..393 | 2032 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19586-PA | 393 | GI19586-PA | 6..393 | 1..393 | 1860 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20023-PA | 391 | GL20023-PA | 4..391 | 1..393 | 1839 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21447-PA | 391 | GA21447-PA | 4..391 | 1..393 | 1839 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20395-PA | 393 | GM20395-PA | 1..393 | 1..393 | 2095 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25870-PA | 393 | GD25870-PA | 1..393 | 1..393 | 2095 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18335-PA | 394 | GJ18335-PA | 6..394 | 1..393 | 1876 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22247-PA | 395 | GK22247-PA | 4..395 | 1..393 | 1828 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13485-PA | 393 | GE13485-PA | 1..393 | 1..393 | 2088 | 99 | Plus |
Translation from 109 to 1290
> LD41588.hyp MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RnrS-PA | 393 | CG8975-PA | 1..393 | 1..393 | 2032 | 100 | Plus |