Clone LD41588 Report

Search the DGRC for LD41588

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:415
Well:88
Vector:pOT2
Associated Gene/TranscriptRnrS-RA
Protein status:LD41588.pep: gold
Preliminary Size:1621
Sequenced Size:1593

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8975 2001-01-01 Release 2 assignment
CG8975 2001-07-04 Blastp of sequenced clone
CG8975 2003-01-01 Sim4 clustering to Release 3
RnrS 2008-04-29 Release 5.5 accounting
RnrS 2008-08-15 Release 5.9 accounting
RnrS 2008-12-18 5.12 accounting

Clone Sequence Records

LD41588.complete Sequence

1593 bp (1593 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051936

> LD41588.complete
CAACTTTCAAACTGTACACTTAATACACGTCGTGGTTTAAGTGAATTTTA
CCAGAGAATCAGAGAAGCGCCCCTACCTGCTAATAATAATCCATTCAAAA
ACATCTCAAATGGCGTCCAAGGAAAACATTGCTGACAACATGGAGAAGTT
CTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACCAACAACG
TTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGCCAAGGAG
TCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCATGGAGAA
GTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGCGAGAATC
CCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTGGCAGATG
TACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTC
CAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGCCATTTCA
TCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTAAACGAG
AACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGTTG
CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACA
GTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTG
TTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGC
CCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGCATCATCG
CCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATT
TTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGA
GCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGT
TCCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATC
CGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCCTGCCCGT
CAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCG
TAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACC
AAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAA
CTTTTTTGAGAAGAAGGTGGGGGAGTACCAGCGCATGGGAGTGGTCAGCA
ACCCCCTGGACAACGTGTTCACCCTGGACGCGGATTTCTAGGGCTGGCCC
CGGACATCATTGTTGCAATTTAAACCTCTCAAGGGCTGGCTTCTCATCCT
TTATATTTTAATCTGACGGCAATTATATGTAGTCCGTTTTAATTTTAACA
TAGGCTAAGAACAATCACAGACCTTCAACACATTCACCTAATCATTTACT
TGGACCTCCAATTACGTTTATAATACTATCTACACACTTGACTTTTACGA
GGAGCGTACCTTTTCCGAATTCATTGTACATACAACATTTTAAATAAATT
TATACATAGACAATTATTAAGCACTAAAAAAAAAAAAAAAAAA

LD41588.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1802 RnrS-RA 191..1766 1..1576 7880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7870362..7871529 1575..408 5795 99.7 Minus
chr2R 21145070 chr2R 7872035..7872286 410..159 1260 100 Minus
chr2R 21145070 chr2R 7872433..7872592 160..1 785 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11983144..11984312 1576..408 5845 100 Minus
2R 25286936 2R 11984818..11985069 410..159 1260 100 Minus
2R 25286936 2R 11985216..11985375 160..1 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11984343..11985511 1576..408 5845 100 Minus
2R 25260384 2R 11986017..11986268 410..159 1260 100 Minus
2R 25260384 2R 11986415..11986574 160..1 800 100 Minus
Blast to na_te.dros performed 2019-03-15 16:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 2318..2398 1122..1200 112 61.7 Plus

LD41588.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:40 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7872433..7872592 1..160 99   Minus
chr2R 7870362..7871527 410..1575 99 <- Minus
chr2R 7872036..7872284 161..409 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:02 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 110..1291 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:32 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 110..1291 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:54:54 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 110..1291 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:00 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 110..1291 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:38 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 110..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:48 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 69..1643 1..1575 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:32 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 69..1643 1..1575 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:54 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 19..1593 1..1575 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:00 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 69..1643 1..1575 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:38 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 19..1593 1..1575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:40 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11983145..11984310 410..1575 100 <- Minus
2R 11984819..11985067 161..409 100 <- Minus
2R 11985216..11985375 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:40 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11983145..11984310 410..1575 100 <- Minus
2R 11984819..11985067 161..409 100 <- Minus
2R 11985216..11985375 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:40 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11983145..11984310 410..1575 100 <- Minus
2R 11984819..11985067 161..409 100 <- Minus
2R 11985216..11985375 1..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:54 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7870650..7871815 410..1575 100 <- Minus
arm_2R 7872324..7872572 161..409 100 <- Minus
arm_2R 7872721..7872880 1..160 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:01 Download gff for LD41588.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11984344..11985509 410..1575 100 <- Minus
2R 11986018..11986266 161..409 100 <- Minus
2R 11986415..11986574 1..160 100   Minus

LD41588.pep Sequence

Translation from 109 to 1290

> LD41588.pep
MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST
VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK
AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV
ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA
IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL
KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA
VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP
FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*

LD41588.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11796-PA 393 GF11796-PA 1..393 1..393 1903 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22616-PA 393 GG22616-PA 1..393 1..393 2047 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20400-PA 393 GH20400-PA 6..393 1..393 1854 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-PA 393 CG8975-PA 1..393 1..393 2032 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19586-PA 393 GI19586-PA 6..393 1..393 1860 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20023-PA 391 GL20023-PA 4..391 1..393 1839 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21447-PA 391 GA21447-PA 4..391 1..393 1839 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20395-PA 393 GM20395-PA 1..393 1..393 2095 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25870-PA 393 GD25870-PA 1..393 1..393 2095 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18335-PA 394 GJ18335-PA 6..394 1..393 1876 89.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22247-PA 395 GK22247-PA 4..395 1..393 1828 87.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13485-PA 393 GE13485-PA 1..393 1..393 2088 99 Plus

LD41588.hyp Sequence

Translation from 109 to 1290

> LD41588.hyp
MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST
VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK
AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV
ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA
IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL
KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA
VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP
FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*

LD41588.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-PA 393 CG8975-PA 1..393 1..393 2032 100 Plus