Clone LD41638 Report

Search the DGRC for LD41638

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:416
Well:38
Vector:pOT2
Associated Gene/TranscriptCG3309-RA
Protein status:LD41638.pep: gold
Sequenced Size:2649

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3309 2003-01-01 Sim4 clustering to Release 3
CG3309 2005-01-26 Blastp of sequenced clone
CG3309 2008-04-29 Release 5.5 accounting
CG3309 2008-08-15 Release 5.9 accounting
CG3309 2008-12-18 5.12 accounting

Clone Sequence Records

LD41638.complete Sequence

2649 bp assembled on 2006-11-09

GenBank Submission: BT021379

> LD41638.complete
CCTGATTCCCCTTGTCAATGTCGCTGGCAAATAAATAAATAAATATCAAC
AAAATACAGAATGAGCGCGGATGCGAGAATCAAGCAGATGGCGCCATCGC
TGGACACCACCGAACGGGAGAGGGAGCACCAGAACGTGGATGCCACCAAC
TCGAACTCGGAGCCCAGTGCCAGCGATTGGGTGAACTTCTCGCAATGGAT
GCACTGCTTCTGCGTGGTCACCTTCGATCTAAATCTTGGGCAGGCGCTGG
AGCACGTCTATCCGCCGGCTTTCATGCCCAGCGACCAGGAGGTTAGCAAC
ATTTGCTACATGGCCTTCCCGGACTCAAATTCCGGCTGCATGGGCGACAC
CAAGTTCCACATGCGATTGCGCTGCACAACGCGTCGGGATTCCTTGCCGG
GCTACAATGCGGAATGCTCGCCGGCGCTGCGACAGGATGGCTCCCACTAC
TGGGGCTTCGTCTACTTTCGCCAGAAGCGGGACGCGAATCTGCCGCGTGG
TTACTTCCAGAAGAGCTTTATAATCATTACACGACTGCCGTTCTTCAATC
TGTACTACGACATACTCTCCCAGCTGGCGCCGCGCTACTTTGAGGAGGGC
ACCGACGTCCTGCGTCTGGCCAGCGAGCAAATTAATCGCCAGTGGCCCGG
CCTGCGAGTGGGTAAGCCGCTCCAGCTGCCTCTGCTGGATTGCAGCTATC
AGATCTGCATACCGCGGACCAGCAGCAGTCGAAAGTCGACGGCCGATGGA
GGCATCGCAGGTGGTGCGGTGGAATCGCCACCAGCCATGGCTGCTTGCCC
GGCAGCCAAAGTGCTGGCCTCCGTTAATGAAATCGAACTCTTCCGCTCCC
TGGACTTTGTCATGGAGCAACTGTACACGCTGTGGGAGCTGGTCATCACC
GCCGAGCCCATTGTTGTCGTTGGCACCTCACCCGCCGACTGCTCCCACAT
GGTGCAGACCCTTCTGGCCATGATTGCTCCGCTGGAGTATTGCGCCGAGG
CGCGTCCCTACTTCACCATTCACGACAGCGAATTTCGCGAATTCACACAA
GAGTGCAGCAGCAAGACCACACTGCCCGCCTGCATTTTGGGCGTCACGAA
TCCGTTCTTTGTGAAGCTCCTGAAGGATTGGCCGCACATGCTGCGACTGG
TGGACAACCAGAAGAACATGCAGCAGCAACAGCATCTGCTGCTGGGCCAA
AAACACGCAAGGAACATCGCATCGGCCACATCATTTTCCAGTTCAACGGA
ACTCGGTGGCCGTATAGCACTGAAATCGAACACCAATCTCAATGGCAGCT
CCAGTTCCAGCAATGGCTCGGGCGATGCCTCGTCCGCGGGCCTGCACAGT
AAATATAGGCCGTACCTGAAAAAGGACAAGGCGCTGATCAAAAAGGTGCT
GCTGGGCATGAAGACCAAGCGGCCGGAGCATGTGCAAACCGCACTGATAC
GACGCCATCTGCTCGAGCTGACGCAAAGCTTTATGATACCACTGGAACGG
TATATGGCATCACTGATGCCGCTGCAAAAGGACATCAGTCCGTTTAAGTC
GGCGCCGAATGCCAACAGCTTTAAGCTGGATGACTTTCTGGGCACGCTGG
AAACCGCTGGGCCGCAGCTAACGTCGCCGCTGAAGGGCGACTGGAAGGGC
CTGTACAGACGCTTCTTTCGATCGCCCAATTTTCGCGGCTGGTACGGTGC
ACGTCATCGGGAGCTGCAGCTAACGCTGCAGGATCTACAGCTGCAGGCGC
TATCCGTGGCGAATCTCGAGCACTGGGCGCACGACAAGCAGGAGGTGGAG
ATCATCGATATGATACTCAAGCTCAAGCAAAAACTGAATCTCTATGGCGA
CAAAGCCACGCAGCTGGAGGGCAACAATGGCTCAACTCAGCAGCAGATAC
GCGCCCAGATTGAGTGCATGAAGGGCTTGCTGCCGCCGGATCTCAAGAAT
GTGGTGAATCTTTGATGGTAGTAGCTCAATCCTCGTCCTCCTCCTTCTCT
TCTGCCACTTATCACTTTGGCTGCTCCACATCTGTCTGCTAGTATCCTGT
GATTGTGTGATTGTGCCTGGCGGTGCTCTTTATCAGTGTAAATAGATTTT
AATCGGCGATTAGTCGCCGTATTTGTGTCTAGTTTAATTCTAAAGTGAAT
CCAAGCGAAGCGATGAATGTTGTTAGTTCAAACTACAAGTCAAGTATTAA
ATGTAATCGATGTGTCCCTTCCATATTTTCACATCCATGCGAAAACAATG
CTCATGTCTCAAAATGTCGAAAACCATGCCAATAATATCTATGTGGCTGC
AGCTTGAAACCACTAACCACAACATTGCAGTCCCTTCCTCTCCAGCTTTT
TACTGATTGTGAATGGGAGTTGTGAAGCCAGTTGGTTATACCTTCAGTTT
GTTTCTTTTAAAACCGTTGTGCAACTTTGTGTGTATATCGCTTAAATTGT
TTATGTCAAATATAAGTTAACTATAATACATTAGCCAACAGCTGCAGCCT
TTCCTTATGCCAACGTACATATTCCGTGGATTGCAATGGGAGTTCCAAAG
TGTTTATTTTTTTTTTTATATAAATACAAAACAAAAATGACAACTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD41638.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3309-RA 2699 CG3309-RA 66..2663 1..2598 12990 100 Plus
CG3309.a 2696 CG3309.a 66..2660 1..2598 12920 99.8 Plus
Mcm3-RA 2864 Mcm3-RA 2779..2864 2598..2513 430 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5219224..5220658 2596..1159 7080 99.7 Minus
chrX 22417052 chrX 5220715..5221875 1161..1 5670 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5326673..5328112 2598..1159 7200 100 Minus
X 23542271 X 5328169..5329329 1161..1 5805 100 Minus
X 23542271 X 5142404..5142476 2577..2649 185 83.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5334771..5336210 2598..1159 7200 100 Minus
X 23527363 X 5336267..5337427 1161..1 5805 100 Minus
Blast to na_te.dros performed 2019-03-16 15:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6892 1155..1313 150 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6861 1131..1233 132 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6897 1140..1233 123 61.5 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5447..5599 2143..2289 119 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6798 1154..1233 117 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1078..1152 1154..1233 116 67.5 Plus
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1392..1440 2588..2541 116 73.5 Minus
roo 9092 roo DM_ROO 9092bp 1087..1145 1131..1189 115 66.1 Plus

LD41638.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:57:49 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5220715..5221875 1..1161 99   Minus
chrX 5219224..5220655 1162..2596 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:06 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 1..1905 61..1965 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:13 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 1..1905 61..1965 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:21:47 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 1..1905 61..1965 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:34:17 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 1..1905 61..1965 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:39 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 1..1905 61..1965 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:30 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 8..1972 1..1965 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:13 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 22..2617 1..2596 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:47 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 22..2617 1..2596 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:34:17 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 8..1972 1..1965 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:39 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
CG3309-RA 19..2614 1..2596 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:49 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
X 5326675..5328109 1162..2596 100 <- Minus
X 5328169..5329329 1..1161 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:49 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
X 5326675..5328109 1162..2596 100 <- Minus
X 5328169..5329329 1..1161 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:49 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
X 5326675..5328109 1162..2596 100 <- Minus
X 5328169..5329329 1..1161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:47 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5220708..5222142 1162..2596 100 <- Minus
arm_X 5222202..5223362 1..1161 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:37 Download gff for LD41638.complete
Subject Subject Range Query Range Percent Splice Strand
X 5334773..5336207 1162..2596 100 <- Minus
X 5336267..5337427 1..1161 100   Minus

LD41638.pep Sequence

Translation from 60 to 1964

> LD41638.pep
MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCF
CVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFH
MRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQ
KSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRV
GKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAK
VLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQT
LLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFF
VKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGG
RIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGM
KTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPN
ANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHR
ELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKAT
QLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNL*

LD41638.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20946-PA 647 GF20946-PA 1..647 1..634 2596 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18500-PA 630 GG18500-PA 1..630 1..634 3003 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24361-PA 629 GH24361-PA 21..629 29..634 2268 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3309-PA 634 CG3309-PA 1..634 1..634 3331 100 Plus
CG3309-PB 633 CG3309-PB 1..633 1..634 3314 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11055-PA 622 GI11055-PA 1..622 14..634 2283 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14644-PA 655 GL14644-PA 42..655 26..634 2470 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17271-PA 670 GA17271-PA 43..670 25..634 2465 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12647-PA 634 GM12647-PA 1..634 1..634 3363 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16264-PA 634 GD16264-PA 1..634 1..634 3371 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14812-PA 627 GJ14812-PA 1..627 1..634 2299 71.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14685-PA 677 GK14685-PA 30..677 3..634 2232 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16817-PA 638 GE16817-PA 1..638 1..634 2910 91.9 Plus

LD41638.hyp Sequence

Translation from 60 to 1964

> LD41638.hyp
MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCF
CVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFH
MRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQ
KSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRV
GKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAK
VLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQT
LLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFF
VKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGG
RIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGM
KTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPN
ANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHR
ELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKAT
QLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNL*

LD41638.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3309-PA 634 CG3309-PA 1..634 1..634 3331 100 Plus
CG3309-PB 633 CG3309-PB 1..633 1..634 3314 99.8 Plus