Clone LD41718 Report

Search the DGRC for LD41718

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:417
Well:18
Vector:pOT2
Associated Gene/TranscriptCG2260-RA
Protein status:LD41718.pep: gold
Preliminary Size:2196
Sequenced Size:2016

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2260 2001-01-01 Release 2 assignment
CG2260 2002-04-04 Blastp of sequenced clone
CG2260 2003-01-01 Sim4 clustering to Release 3
CG2260 2008-04-29 Release 5.5 accounting
CG2260 2008-08-15 Release 5.9 accounting
CG2260 2008-12-18 5.12 accounting

Clone Sequence Records

LD41718.complete Sequence

2016 bp (2016 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095054

> LD41718.complete
AAGCAGCACGTGCACGTTGTTGTCAAATTTCAAATTAACTTTATTTGAAG
CCAGCTTTTAAGTTAATTTCATCTTGCTGACACATCAAGATGACGAAAGT
AACGCCGAAAGGGCGCCCGAAGGCTAAGACGCCGTACAAACGCTACTTCG
ACGGCCAAAAGGACACAGAAACGGGCGACGGCGATCTAAAACATGTAAAA
GTGTTCAGCAAAAACCGACAGAATTTCACTGGCGATTTTATCAGTATGAT
TAATAAAACGAAGAAGCCGCGTCCCCAAAAGGCTCCCGCCAAACCCACAA
AGGAGGAGCTGGAAGCTAGGCCCAAGAAGAACCCGATTCCCAAGGAGATC
CTCGACAAGTACTCACGTGGCGAGCAAGTGCAGCCGAAAGGTGTGAAAAC
GCGGCACTTCAAGGAGCAGCAGACGCGCAAGGAGGTCTACCTCGAATACG
CCACCGAGCAGGCGGCCCGCACAGAGCTCCTACTCCAGGAAACCGCTGGG
CAGCTACAGGCAGATGAGGGCGAGACCACCGCCGAATTTAGACAGTCCCA
AATTGCCGAGAATGTGGATATCCAGTCATCGGCCAAGCACTTCAACCTGA
ACATGGAATTCGGTCCTTACCGAATGCGCTACACCAAGAACGGCAGGCAT
TTGCTGCTCGGCGGCAAACGCGGTCATGTGGCCGCCTTCGATTGGGTGAC
CAAGCGTCTGCACTGCGAATTCAATGCGATGGAGAGCGTCGAGGATGTTC
AGTGGCTGCATGTGCCCACCATGTACGCGGTGGCCCAGAAGAGCTGGGTC
TATTTCTACGACAAAAAGGGCACCGAACTGCATTGCATCAAGCGGCTGAA
TCGGGTCAATCGCCTGGACTTCCTGCCCTACCACTTCCTCCTGGCCGCCG
GCAACAGTGCGGGCTATGCTTCCTGGCTGGACGTCTCCATTGGCGAGCTG
GTGGGTAACTTTAACACGGGACTGGGCGATATACGCATGCTGCGACACAA
TCCCCGAAATGGTGTACTCTGCATTGGCGGCGGACGTGGTGTGGTGTCCA
TGTGGTCGCCCAAAGTGCGTGAGCCGCTGGCCAAGCTCCTGTGCCATTCG
ACAGCCATGTCTGCTCTGGCGGTGGAACCCAAGGGCCAGTATTTGGTTAC
CGCTGGCTTGGATAGGGCTGTGAAAGTTTGGGACATTCGGATGCTGGTGC
ACGACAAGCCGCTGACTCATTTCCAGCTGCGTCTGCCCGCCAACGAACTG
GATGTGTCGCAACGTGGCATGCTGGCGCTATCGCAGGGCACCTATCTGGA
GACCTACTCGGATCTGCTCTCCGGCGGAGGTTCGGGTGACGGTACCCGGT
TGCCTTATATCCGCCAACGCTGCGATGCCTTTGTCCACGGGCTGCGTTTC
TGCCCGTACGAAGATGTGCTTGGTGTGTCGACGGCCAAGGGCTTCCAATC
GCTATTGGTGCCCGGCTCTGGAGAGCCCAACTTCGATGCTATGGAAGACA
ATCCGTATGAGACTTCGAAGCAACGACGCGAGCACGAGGTTCACGCTCTG
CTGGAGAAGATTCCGCCCGAACTGATCACCCTGGATCCGCAAGAGATCAC
TGGCGTGGATGCGCCCACGCTGCAGGAGAAGATCGATGCCAAGAGGAAGC
TGTTCCATTTGAAGGCGCCGCGCATCAACATGAAATCGCGCCACAAGATG
AAGGGACGTGGCGGCACTGCCAAGGCGGCGCGCAACAAACAGATCGTCAA
GGATGCCAAGCGAAAGGAGTTTATTGCCGAGGTGCGCGAGGCCAAGAAGA
ACGTTATCAAGCAGCACACAGCCGACGAGGTGGGTGCCAAGGGCAAGGCC
AAGACCAAGGCACCACGCTCCGTTCTGGATCGTTTCAAACCCAAGCCACC
CAAAAAACAGAAAACCTGAACAGAGTTCGTCTTAAGCAGAAGGAATATAA
TGTATACATTAAACTTAGAAGCTTAACCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

LD41718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2260-RA 2011 CG2260-RA 31..2011 1..1981 9875 99.8 Plus
CG1575-RA 2071 CG1575-RA 2016..2071 1981..1926 250 96.4 Minus
CG1575.a 2089 CG1575.a 2034..2089 1981..1926 250 96.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8011231..8012997 1767..1 8775 99.8 Minus
chrX 22417052 chrX 8010959..8011171 1977..1765 1050 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8119354..8121120 1767..1 8835 100 Minus
X 23542271 X 8119078..8119294 1981..1765 1055 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8127452..8129218 1767..1 8835 100 Minus
X 23527363 X 8127176..8127392 1981..1765 1055 99 Minus
Blast to na_te.dros performed on 2019-03-16 04:25:51 has no hits.

LD41718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:26:43 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8010958..8011169 1767..1978 99 <- Minus
chrX 8011232..8012997 1..1766 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:11 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1830 90..1919 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:17 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1830 90..1919 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:48 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1830 90..1919 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:48:03 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1830 90..1919 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:39:41 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1830 90..1919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:34:27 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1977 1..1978 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:17 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1977 1..1978 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:48 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 28..2004 1..1977 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:48:03 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 1..1977 1..1978 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:39:41 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
CG2260-RA 28..2004 1..1977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:43 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
X 8119081..8119292 1767..1978 99 <- Minus
X 8119355..8121120 1..1766 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:43 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
X 8119081..8119292 1767..1978 99 <- Minus
X 8119355..8121120 1..1766 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:43 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
X 8119081..8119292 1767..1978 99 <- Minus
X 8119355..8121120 1..1766 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:48 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8013114..8013325 1767..1978 99 <- Minus
arm_X 8013388..8015153 1..1766 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:20:25 Download gff for LD41718.complete
Subject Subject Range Query Range Percent Splice Strand
X 8127179..8127390 1767..1978 99 <- Minus
X 8127453..8129218 1..1766 100   Minus

LD41718.pep Sequence

Translation from 89 to 1918

> LD41718.pep
MTKVTPKGRPKAKTPYKRYFDGQKDTETGDGDLKHVKVFSKNRQNFTGDF
ISMINKTKKPRPQKAPAKPTKEELEARPKKNPIPKEILDKYSRGEQVQPK
GVKTRHFKEQQTRKEVYLEYATEQAARTELLLQETAGQLQADEGETTAEF
RQSQIAENVDIQSSAKHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAF
DWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFYDKKGTELHCI
KRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRM
LRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQ
YLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQG
TYLETYSDLLSGGGSGDGTRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAK
GFQSLLVPGSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELITLDP
QEITGVDAPTLQEKIDAKRKLFHLKAPRINMKSRHKMKGRGGTAKAARNK
QIVKDAKRKEFIAEVREAKKNVIKQHTADEVGAKGKAKTKAPRSVLDRFK
PKPPKKQKT*

LD41718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20981-PA 613 GF20981-PA 1..603 1..599 2649 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17987-PA 608 GG17987-PA 1..598 1..599 3021 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24866-PA 607 GH24866-PA 1..605 1..609 2389 74.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2260-PA 609 CG2260-PA 1..609 1..609 3202 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14417-PA 604 GI14417-PA 1..592 1..599 2343 74.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20196-PA 609 GL20196-PA 1..609 1..609 2600 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15330-PA 609 GA15330-PA 1..609 1..609 2585 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11210-PA 609 GM11210-PA 1..609 1..609 3203 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16128-PA 609 GD16128-PA 1..609 1..609 3209 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18764-PA 610 GJ18764-PA 1..598 1..599 2418 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18332-PA 601 GK18332-PA 1..599 1..608 2313 72.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17481-PA 607 GE17481-PA 1..597 1..599 3000 95 Plus

LD41718.hyp Sequence

Translation from 89 to 1918

> LD41718.hyp
MTKVTPKGRPKAKTPYKRYFDGQKDTETGDGDLKHVKVFSKNRQNFTGDF
ISMINKTKKPRPQKAPAKPTKEELEARPKKNPIPKEILDKYSRGEQVQPK
GVKTRHFKEQQTRKEVYLEYATEQAARTELLLQETAGQLQADEGETTAEF
RQSQIAENVDIQSSAKHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAF
DWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFYDKKGTELHCI
KRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRM
LRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQ
YLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQG
TYLETYSDLLSGGGSGDGTRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAK
GFQSLLVPGSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELITLDP
QEITGVDAPTLQEKIDAKRKLFHLKAPRINMKSRHKMKGRGGTAKAARNK
QIVKDAKRKEFIAEVREAKKNVIKQHTADEVGAKGKAKTKAPRSVLDRFK
PKPPKKQKT*

LD41718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2260-PA 609 CG2260-PA 1..609 1..609 3202 100 Plus