Clone LD41750 Report

Search the DGRC for LD41750

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:417
Well:50
Vector:pOT2
Associated Gene/TranscriptSrp68-RA
Protein status:LD41750.pep: gold
Preliminary Size:2096
Sequenced Size:2102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5064 2001-01-01 Release 2 assignment
CG5064 2001-09-19 Blastp of sequenced clone
CG5064 2003-01-01 Sim4 clustering to Release 3
Srp68 2008-04-29 Release 5.5 accounting
Srp68 2008-08-15 Release 5.9 accounting
Srp68 2008-12-18 5.12 accounting

Clone Sequence Records

LD41750.complete Sequence

2102 bp (2102 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058698

> LD41750.complete
TTGATTTGTGTCGACTGCTAAGAAAATGGTCGTGCAAGAAGATAATCCAA
ATACTGGGGACGTTCAGGAAAAGACGGAGACTGCTCCGGTGGCAGAGCCC
TCCAAGATCTTCACGGTGGAGATTCTGCACATGATTAAGGATGCCCAGCA
ACAACACGGCCTGCGCCACGGCGACTTCCAGAGGTACCGCGGATACTGCA
GCCGCCGCATCCGTCGATTGAGGAAGGCCCTGAAGTACCCCCAGGGCGAC
AAGCGGCACTTCAAAAGACGCGACGTGACCATTGGCCAATTGACAGGCAA
GAAGGCGGACGAGCGTTTCATCCACATCCCATTGATCTGCGCCGAGCGGG
CCTGGGCGTATGCCATGCAGCTCAAGCAGGAGTCCAATACGGAGCCGCGA
AAGCGTTTCCATCTGGTCAACAAGCTGCGCAGGGCCTGTTTCTATGCCCT
CCAGCTCCAGGAGTTGTGTAATACGGAGGCTTTCGATGCGCGCACTAAGC
TAGAGTGCGAAGCCTATGTTGCCTGGATGCACGGAACCCTGCACTTTGAG
CTGCAGCTATGGAAAACCGCTGGCGAGCACCTAAAGCGCGCCCAAGTGGT
GTACGAAAACCTGGGCAAGGCTCTGCCCGAAGATGAACAAGAGCTTTACC
GCGCTAAGGTTAATGAATTTACGCCCAATCTGCGCTACTGCGCCTACAAC
ATCAGCGGTGGCGCCAGTGGCGGCAAGATCGACGAGATCCTGGAGCTGCG
CGCTCAGGGAGTGCTTGAGAATCTTGACGTACTGGTCAGTCAGACAAAGA
CGGAGAGCAGCGAGGGCCTGCAGACGATCGACTGGCGCGGTCGCAAGGTC
ACCGTGCGTCCGGAGAAGGTGCGTTTGTTCCTGCTCAGTGCTCAGGAGTT
GGACAAGTCGCTGGCCAAGACCACCAAGCAGGATGCCAAGATAGAATTGA
TTGAGCGTATTTTGATGGACTGCAAGGATGCCATCCAGGCCGTTCGCGAC
GAAATCAAACAGGATCCCAAGCTGCGTTCGTTAACCACCGGTCAGACCGT
ATCCGGCGTACAATATCTACTGGCATATTTAAGTTATATTCGCCATAGCC
GTACACTGCAGCGTAATCTTTGCCTAGTGGAACAGGCTAAGCTCAACTTT
TACGATCCCAACCTGCAGTCTCAACAAAATGTGGGTGACGGCAAACGCGT
CCGACCCCAGGATTTGGCCCGTCTTTACGAGATCATCCTGCAGAACGTGA
CGGAAATGCAGCAGATAAACGGTTTGGAGGACGACGCCACGTACCAAAGC
GAGGTGGAGAACCTGGCCATCACCTTCAAGGCCTTCCGCTGCTACTACAT
TGCGCTCACACTCATCGACATAAAGAAATGGAAAGAAGCCGTGGCGCTTT
ACGAACGCGCATCTAACTACGCCACCGAGGCGCTGAAAGGCAAGAGTAGC
CCGGAGTTTCAGCTGCAGGAGGAACTCAAAAAGGTCGTGTCCGCCATTGA
CGGATGCAAGTTCTCCGCCCATGCATACAGTGTGCTGGAGGATGACAACA
GCGAGGAGTCCGGAACCACCACCAAGTCGCAGAAGACCACAAAACCGCTG
TATGAGCGTTTGTCACTATACAAGGAGGATCAGTCCCTGCACACCAAGGC
GCCTAACGTGTTCAAGCTAACCCCTGACATGGAACCCATACCATGCAAAC
CGATTTTCTTTGACCTGGCTATGACCTACGTGGAGCTTCCCTCGCTGGAG
GGCAAACTTGAATCGCCCGGCAAGAAAGGAGCCTCCATTACCGGCTTTGT
CAAGGGATTCCTCGGATGGGGTGGGGGCGGAAACAAGTGAAGTGGATTCT
AACCACTACAACGTATTCTTCTGGAATTCCACGCATCCATGTTACACTTA
TAAAGCCTTTAGATCCATGTCCACGCTGCGGTATGTCCGTTTTATAAGTT
ATTTGTTTGGGCTTTTACCCCCGCCAGATTTGTTTTTTCTACGAAACTTT
TGTAAGTTGCATATTGAACAACTATTCGGTAATAAAGGAACCTTTTAGAG
AGAACCTTTTTAGAGAGTTCTTCGAGGGCAAAAAAAAAAAAAAAAAAAAA
AA

LD41750.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Srp68-RA 2246 Srp68-RA 90..2171 1..2082 10410 100 Plus
Srp68.a 2173 Srp68.a 208..2167 123..2082 9800 100 Plus
Srp68.a 2173 Srp68.a 52..173 1..122 610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8968518..8969464 1133..2079 4615 99.2 Plus
chr3L 24539361 chr3L 8967800..8968463 473..1136 3305 99.8 Plus
chr3L 24539361 chr3L 8967388..8967737 123..472 1690 98.9 Plus
chr3L 24539361 chr3L 8967162..8967283 1..122 610 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8976455..8977404 1133..2082 4750 100 Plus
3L 28110227 3L 8975737..8976400 473..1136 3320 100 Plus
3L 28110227 3L 8975325..8975674 123..472 1750 100 Plus
3L 28110227 3L 8975099..8975220 1..122 610 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8969555..8970504 1133..2082 4750 100 Plus
3L 28103327 3L 8968837..8969500 473..1136 3320 100 Plus
3L 28103327 3L 8968425..8968774 123..472 1750 100 Plus
3L 28103327 3L 8968199..8968320 1..122 610 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:18:28 has no hits.

LD41750.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:19:16 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8967162..8967283 1..122 100 -> Plus
chr3L 8967388..8967737 123..472 98 -> Plus
chr3L 8967800..8968462 473..1135 99 -> Plus
chr3L 8968521..8969464 1136..2079 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:13 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 1..1815 26..1840 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:20 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 1..1815 26..1840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:27 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 1..1815 26..1840 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:43 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 1..1815 26..1840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:33 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 1..1815 26..1840 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:27 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 52..2130 1..2079 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:20 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 52..2130 1..2079 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:27 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 54..2132 1..2079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:44 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 52..2130 1..2079 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:33 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
Srp68-RA 54..2132 1..2079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:16 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8975099..8975220 1..122 100 -> Plus
3L 8975325..8975674 123..472 100 -> Plus
3L 8975737..8976399 473..1135 100 -> Plus
3L 8976458..8977401 1136..2079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:16 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8975099..8975220 1..122 100 -> Plus
3L 8975325..8975674 123..472 100 -> Plus
3L 8975737..8976399 473..1135 100 -> Plus
3L 8976458..8977401 1136..2079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:19:16 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8975099..8975220 1..122 100 -> Plus
3L 8975325..8975674 123..472 100 -> Plus
3L 8975737..8976399 473..1135 100 -> Plus
3L 8976458..8977401 1136..2079 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:27 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8968199..8968320 1..122 100 -> Plus
arm_3L 8968425..8968774 123..472 100 -> Plus
arm_3L 8968837..8969499 473..1135 100 -> Plus
arm_3L 8969558..8970501 1136..2079 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:04 Download gff for LD41750.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8968425..8968774 123..472 100 -> Plus
3L 8968837..8969499 473..1135 100 -> Plus
3L 8969558..8970501 1136..2079 100   Plus
3L 8968199..8968320 1..122 100 -> Plus

LD41750.pep Sequence

Translation from 25 to 1839

> LD41750.pep
MVVQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGD
FQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIH
IPLICAERAWAYAMQLKQESNTEPRKRFHLVNKLRRACFYALQLQELCNT
EAFDARTKLECEAYVAWMHGTLHFELQLWKTAGEHLKRAQVVYENLGKAL
PEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLENL
DVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKTT
KQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLA
YLSYIRHSRTLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARL
YEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLIDIK
KWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGCKFSAHA
YSVLEDDNSEESGTTTKSQKTTKPLYERLSLYKEDQSLHTKAPNVFKLTP
DMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITGFVKGFLGWGG
GGNK*

LD41750.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24369-PA 604 GF24369-PA 1..594 1..593 2965 94.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14364-PA 605 GG14364-PA 1..605 1..604 3121 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16536-PA 607 GH16536-PA 1..596 1..593 2818 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Srp68-PA 604 CG5064-PA 1..604 1..604 3130 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13825-PA 606 GI13825-PA 1..595 1..593 2840 88.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15071-PA 591 GL15071-PA 1..579 1..593 2699 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18632-PA 604 GA18632-PA 1..592 1..593 2799 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25108-PA 604 GM25108-PA 1..604 1..604 3192 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14144-PA 604 GD14144-PA 1..604 1..604 3179 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11691-PA 606 GJ11691-PA 1..595 1..593 2852 89.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12346-PA 603 GK12346-PA 3..592 5..593 2831 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20795-PA 605 GE20795-PA 1..605 1..604 3136 96.5 Plus

LD41750.hyp Sequence

Translation from 25 to 1839

> LD41750.hyp
MVVQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGD
FQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIH
IPLICAERAWAYAMQLKQESNTEPRKRFHLVNKLRRACFYALQLQELCNT
EAFDARTKLECEAYVAWMHGTLHFELQLWKTAGEHLKRAQVVYENLGKAL
PEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLENL
DVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKTT
KQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLA
YLSYIRHSRTLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARL
YEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLIDIK
KWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGCKFSAHA
YSVLEDDNSEESGTTTKSQKTTKPLYERLSLYKEDQSLHTKAPNVFKLTP
DMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITGFVKGFLGWGG
GGNK*

LD41750.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Srp68-PA 604 CG5064-PA 1..604 1..604 3130 100 Plus