Clone LD41848 Report

Search the DGRC for LD41848

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:418
Well:48
Vector:pOT2
Associated Gene/TranscriptCG4558-RA
Protein status:LD41848.pep: gold
Preliminary Size:2050
Sequenced Size:2085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4558 2001-01-01 Release 2 assignment
CG4558 2001-10-10 Blastp of sequenced clone
CG4558 2003-01-01 Sim4 clustering to Release 3
CG4558 2008-04-29 Release 5.5 accounting
CG4558 2008-08-15 Release 5.9 accounting
CG4558 2008-12-18 5.12 accounting

Clone Sequence Records

LD41848.complete Sequence

2085 bp (2085 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061462

> LD41848.complete
AACAAATAAAATTATAGAAAACAAAAAAAAAAAAGGATGCTATGTTCTAA
AAATGTACGTTGAGTGATTTGCGACCAACGGGAAATCCCCCACAAAGACA
CGACAACGAAATTAGATCGGAAAATCGAGCTCCAACGCATTTGTTTATGT
GACCCAAGGAGCGCCATGGCGGATCCGGAGGATTATGATCTGAACTTTGT
TCAGCTGAGTCGCCAGCAGGCGCTGCAGCGATATGCGGGTGCAGTGCGTC
AGCTGCGCCGGCTGGCTGATCAGCGGTACGGTGTGCGATCCCTTAGCTTC
GACAATTATGTGCTGTTTCAGTATTTCCGGCAACGCAATTGGCAAACTGG
CGTCACGCCACCCGCCCCCTTAATGGCCTACCTCAAGCTTGAGGTACTGC
ATCATCTGCTGGACCGACGACGACAGATCCTCTGCTGGCTGTTCTACCTC
ACGGTGGTGTCGCTCTGCGTGGCCGCCTACCGTTATGAGGTAACCAGCTC
CACCGGCGGACATCAGGAGCGCGTTGTCCAGGCCATGGTCTATCCCGGGA
TGCGCATGTGGCGGCGGATGACCATGCCGCTGATCCAACGATTCCCACAG
CTTACCGAACTCTACGACGAGTCCTGCCTGATGGGCAATCCGTTTTTTCA
GCTAGAGGATCTGAGCTGCGGACCGTGTGCCGAAGTGGAGACCGTCTGGC
TGGAGGGCGAGGAGTGTGCAAATGGTCATCCGCTGGAGTACCATCAGAAC
CACAAGTGCCATCAGCCGGAGGGATCGCCCATCGCCTTTAGGAGCAACCA
GCAGGAGTCCATTGACTTGAGCCACTTCTACAACATCTACGCTAGCAATC
ATCAGATCTTCCAGCGCGACGCGTATCGGGTGCACTCGACCAACCAGGAT
GTGCACAATCTTGAGGATCTCTTTGGGCAGTTCAACAGCAGCTGGACCCA
GCAGGCGCACAATCTTTGGCGCTGCAATCGCATGCTGCCCGCGCGACTCC
TGCGTCCCATTTTCGCCCGGCCAACGCGATTGCCCAGCATGGGCGTGGCC
CTGGAGCGTTATGTGGCCATCGATACTGCCCAGGCGCCGGCCTACACATT
GCCGGAAACGGAATGCCCCAATGTCTATATACACCAGGCGGTAGGCACGC
GGTTCATCATCCTGCGACCCACCAGTGAGTGCCGGCACCGCTGTCGCACC
TTGTCTCTGCGACTTACCCAGTCCTTTGTGCGTGAGTATCGTTTCGATTG
CTTTTGTTCCGGGGCCAACACATCACATCAGAAGGTTCACTGTTTAAGGA
TACCTTAGATATACCTTATTTTTTGAGTTATTTAACAAAGGCAGTAGATA
AGCTCTTGGTCAGCTATAACTGACAAATATTATAGTTTTGTTATAATTTC
AATTGAGTATTTGTTGCAGCAAGTTTTCAATGAACCTTTCAGTGTGGGAT
TTCTTACTAATTCCCTATGCTTTTGCAGTCAGTTACAATTGGTTGTACTG
GAAACCGATCTCTGCGCCGGATCCCATCTCCGAAACGCTGTCCATCAGCC
TAATTGGATCTTACTGCTAGAGGATGCCTATTCAGATGGCAGTCCACGTT
TCCCGCTTCCCTCGCTCCTAGCTTTAAGCGCAATATACTTATATATAGAT
ATATACACACACGACAACCAGGACTTTTACCAAGCCAAAATTATTTTACG
AATTTTGCCGCTCCATTGGATAAGCAAGCAAAACAAAAGTATGGAAACAA
GGGAAGCTAGAAGCTGCCTTCGTTTTCAATTTACTAGACCCTTAGGCCAC
CGGCTCAATTCGTCGCCCATTGTAATCCTCAAGTCCTAGATCGTAAGCCT
AAGTTTAGTTAAACAGTTAACAGTTAGCTCCTGGCAGCCGCGCTTCATCC
TTGTGTTCGTCGTTCTAACCATTTTGCATTTAAAACTCTCGACTCTACGT
TCTGTTCACACCAACTAGCGTAGCCAACGGAAAGCGATTTTGTAAATATC
CATTGCCAGACTTGAGTTTGAATTTGTGTTTTTGCAACAACTCACGAAAT
AAAAGATACCTATAAAAAAAAAAAAAAAAAAAAAA

LD41848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4558-RA 2112 CG4558-RA 50..2112 1..2063 10315 100 Plus
CG4558-RB 1910 CG4558-RB 50..1280 1..1231 6155 100 Plus
CG4558-RB 1910 CG4558-RB 1281..1865 1479..2063 2925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6742026..6744076 1..2063 9870 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6849822..6851884 1..2063 10315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6857920..6859982 1..2063 10315 100 Plus
Blast to na_te.dros performed 2019-03-16 20:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 1455..1486 1..32 115 84.4 Plus

LD41848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:42:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6742026..6743392 1..1367 99 == Plus
chrX 6743393..6744076 1381..2063 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:20 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 1..1143 166..1308 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 1..1143 166..1308 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:15 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 1..1143 166..1308 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:58 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 1..1143 166..1308 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:41 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 1..1143 166..1308 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:54 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 50..2112 1..2063 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 50..2112 1..2063 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:15 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 53..2115 1..2063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:58 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 51..2113 1..2063 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:41 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
CG4558-RA 53..2115 1..2063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
X 6849822..6851884 1..2063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
X 6849822..6851884 1..2063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:09 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
X 6849822..6851884 1..2063 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:15 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6743855..6745917 1..2063 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:31 Download gff for LD41848.complete
Subject Subject Range Query Range Percent Splice Strand
X 6857920..6859982 1..2063 100   Plus

LD41848.pep Sequence

Translation from 165 to 1307

> LD41848.pep
MADPEDYDLNFVQLSRQQALQRYAGAVRQLRRLADQRYGVRSLSFDNYVL
FQYFRQRNWQTGVTPPAPLMAYLKLEVLHHLLDRRRQILCWLFYLTVVSL
CVAAYRYEVTSSTGGHQERVVQAMVYPGMRMWRRMTMPLIQRFPQLTELY
DESCLMGNPFFQLEDLSCGPCAEVETVWLEGEECANGHPLEYHQNHKCHQ
PEGSPIAFRSNQQESIDLSHFYNIYASNHQIFQRDAYRVHSTNQDVHNLE
DLFGQFNSSWTQQAHNLWRCNRMLPARLLRPIFARPTRLPSMGVALERYV
AIDTAQAPAYTLPETECPNVYIHQAVGTRFIILRPTSECRHRCRTLSLRL
TQSFVREYRFDCFCSGANTSHQKVHCLRIP*

LD41848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20862-PA 421 GF20862-PA 7..396 6..360 1524 77 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19618-PA 385 GG19618-PA 1..360 1..360 1852 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24793-PA 418 GH24793-PA 8..393 6..360 1365 70.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4558-PA 380 CG4558-PA 1..380 1..380 2061 100 Plus
CG4558-PB 385 CG4558-PB 1..360 1..360 1921 98.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15290-PA 444 GI15290-PA 7..419 6..360 1361 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13402-PA 348 GL13402-PA 48..317 6..259 958 70.4 Plus
Dper\GL23011-PA 88 GL23011-PA 11..88 63..143 259 67.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18256-PA 455 GA18256-PA 48..430 6..360 1443 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12541-PA 363 GM12541-PA 1..363 1..367 1862 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24760-PA 94 GD24760-PA 1..69 292..360 338 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16437-PA 384 GJ16437-PA 7..359 6..360 1427 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25678-PA 380 GK25678-PA 12..355 11..360 1324 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16779-PA 385 GE16779-PA 1..360 1..360 1821 93.3 Plus

LD41848.hyp Sequence

Translation from 165 to 1307

> LD41848.hyp
MADPEDYDLNFVQLSRQQALQRYAGAVRQLRRLADQRYGVRSLSFDNYVL
FQYFRQRNWQTGVTPPAPLMAYLKLEVLHHLLDRRRQILCWLFYLTVVSL
CVAAYRYEVTSSTGGHQERVVQAMVYPGMRMWRRMTMPLIQRFPQLTELY
DESCLMGNPFFQLEDLSCGPCAEVETVWLEGEECANGHPLEYHQNHKCHQ
PEGSPIAFRSNQQESIDLSHFYNIYASNHQIFQRDAYRVHSTNQDVHNLE
DLFGQFNSSWTQQAHNLWRCNRMLPARLLRPIFARPTRLPSMGVALERYV
AIDTAQAPAYTLPETECPNVYIHQAVGTRFIILRPTSECRHRCRTLSLRL
TQSFVREYRFDCFCSGANTSHQKVHCLRIP*

LD41848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4558-PA 380 CG4558-PA 1..380 1..380 2061 100 Plus
CG4558-PB 385 CG4558-PB 1..360 1..360 1921 98.9 Plus