Clone LD41866 Report

Search the DGRC for LD41866

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:418
Well:66
Vector:pOT2
Associated Gene/TranscriptCG6412-RA
Protein status:LD41866.pep: gold
Preliminary Size:1605
Sequenced Size:1518

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6412 2001-01-01 Release 2 assignment
CG6412 2001-07-04 Blastp of sequenced clone
CG6412 2003-01-01 Sim4 clustering to Release 3
CG6412 2008-04-29 Release 5.5 accounting
CG6412 2008-08-15 Release 5.9 accounting
CG6412 2008-12-18 5.12 accounting

Clone Sequence Records

LD41866.complete Sequence

1518 bp (1518 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051938

> LD41866.complete
CAACACGGAAAATTGTCAAAATTTTCAGTTTCAAAATTAATTGCTCGAAT
TAAGCACACAGAAAAGCCGAAAACTAAACTATCGACGCTTACCAGTCGTT
CACCTATCGAGGCACCACACTCGCTTTGGATTTATTCGCGCCGCAACGCG
ATTAATTTTTCTTGAACCGAAGCGAACATACGAAGGAGTTGAAAACAAAT
GCAAATCTCACACAGGCTTTTCCGTTGTTTAGAATGAATTGATTTTCCGG
GCAACTACTACATAGCGACAGGTCGGAAAACGGAAAAACAAACAAGCCGG
CGAGTTGCCCTTGACAGCAGGCAAAGAGCAACAATTCAATTCGCACACAA
ATCACGCTAGAAATCATTTTGGCCTCCCAGTAAATTTCGGAAATTTTTTG
GAAAAATGCTGCTACAAAGGTTTTTCACACGCGCACTTCACTCCACGCGG
CAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAGAAGAGTGCCCT
GGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAATTGCAAGAAGG
CGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAAAGTGGCTGCAC
GAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAGGTCGCAGATCG
AGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGGAAACCGGGGCG
CCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCAGGAACGATACC
TTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTGCAATACACGGA
CTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTTTGATGCGGACG
CCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGGGCGACCACCTG
GCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATCCGGCGCGCATT
GTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTACGCCCATCCCG
CACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGGTGGGCAAGTAC
GGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTGGACTTTGAGTT
TCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCCGACAAAGATCG
GCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACGATGAGACGTGC
CTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACGGTGGGCGAGGC
TTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCGCTTCGAGTGCG
GAGAGCACACGGAACGCAGCCTGGAGGCGATCATTCGCTCGCAGCACCAG
AGCAGCAATTAACTAGCCATTAAGCAGAGTCTAGAACACTAAATTGTTAT
TAGCACAACAGCTGAAGATTGTTAAAACCGAAATTCTGGACAATGTTCTG
GTCAAAATTTGCATGTAAAACAAGTAAAACAACCATTACGATCAAAAAAA
AAAAAAAAAAAAAAAAAA

LD41866.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1579 CG6412-RA 39..1532 1..1494 7470 100 Plus
Dhc36C.b 12239 Dhc36C.b 1..70 161..92 350 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17497901..17498564 1493..830 3320 100 Minus
chr2L 23010047 chr2L 17499124..17499706 583..1 2915 100 Minus
chr2L 23010047 chr2L 17498668..17498917 831..582 1250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499267..17499931 1494..830 3325 100 Minus
2L 23513712 2L 17500491..17501073 583..1 2915 100 Minus
2L 23513712 2L 17500035..17500284 831..582 1250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499267..17499931 1494..830 3325 100 Minus
2L 23513712 2L 17500491..17501073 583..1 2915 100 Minus
2L 23513712 2L 17500035..17500284 831..582 1250 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:45:56 has no hits.

LD41866.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:46:42 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17497901..17498562 832..1493 100 <- Minus
chr2L 17498668..17498916 583..831 100 <- Minus
chr2L 17499125..17499706 1..582 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:21 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 406..1362 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:34 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 406..1362 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:12:44 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 406..1362 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:02 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 406..1362 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:12 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 406..1362 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:52 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 37..1529 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:34 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 37..1529 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:44 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 34..1526 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:02 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 37..1529 1..1493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:12 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 34..1526 1..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:42 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499268..17499929 832..1493 100 <- Minus
2L 17500035..17500283 583..831 100 <- Minus
2L 17500492..17501073 1..582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:42 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499268..17499929 832..1493 100 <- Minus
2L 17500035..17500283 583..831 100 <- Minus
2L 17500492..17501073 1..582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:42 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499268..17499929 832..1493 100 <- Minus
2L 17500035..17500283 583..831 100 <- Minus
2L 17500492..17501073 1..582 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:44 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499268..17499929 832..1493 100 <- Minus
arm_2L 17500035..17500283 583..831 100 <- Minus
arm_2L 17500492..17501073 1..582 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:04 Download gff for LD41866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499268..17499929 832..1493 100 <- Minus
2L 17500035..17500283 583..831 100 <- Minus
2L 17500492..17501073 1..582 100   Minus

LD41866.hyp Sequence

Translation from 405 to 1361

> LD41866.hyp
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSN*

LD41866.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 318 CG6412-PA 1..318 1..318 1684 100 Plus

LD41866.pep Sequence

Translation from 405 to 1361

> LD41866.pep
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSN*

LD41866.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15096-PA 318 GF15096-PA 1..318 1..318 1435 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21737-PA 318 GG21737-PA 1..318 1..318 1647 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10152-PA 312 GH10152-PA 1..312 1..318 1294 74.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
mEFTs-PA 318 CG6412-PA 1..318 1..318 1684 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22377-PA 315 GI22377-PA 1..315 1..318 1291 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15933-PA 317 GL15933-PA 1..317 1..318 1318 75.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19572-PA 317 GA19572-PA 1..317 1..318 1305 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17120-PA 318 GM17120-PA 1..318 1..318 1643 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21861-PA 318 GD21861-PA 1..318 1..318 1637 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20276-PA 315 GJ20276-PA 1..315 1..318 1316 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18224-PA 323 GK18224-PA 1..322 1..318 1282 75.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13126-PA 318 GE13126-PA 1..318 1..318 1652 96.5 Plus