Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD41905.complete Sequence
2361 bp (2361 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061464
> LD41905.complete
CTACACTGGCTTTGTCCGCCGACTGAACCAAGATTAATTTGATCACCTAA
CCTCACACAGCAGCGAAAATGGCCCAGCTTACACAGATGACCAACGAGCA
GCTCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCG
GAAGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAAC
TTCTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGT
CGAGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCA
GCGACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCC
AGCACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGC
CATCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGA
TCTACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGAC
ACCTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCG
CCACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCA
AGTACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTC
CTGGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACA
GCTTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCA
CCTACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAG
AAGGATCGGCAGGAGGAGCAGCACGAGGAGTAGGCGACAAAAAGAACATC
AAATACCAACAGGCAGCAGCCAACGTCATTGATGACCTCATCGCTGCTGC
CGCCCACCCAAACAGAACTTTTCGTAGCCTCGCCAGCCGATCGACGTCAG
AGAGAGCCCAACAACCGGAGAGCTGGAGATGGGGAGCAGCCACATCAACA
GCAGCAACAGCAGCCACATCTCTTCATACTCTTCATACTCACTGGCAATC
GGCGTGCCGGTAAGCCTCGACTAGCTTCTGAAATCCACAAATCCACGCTG
TTTGTATTGCTATTCGCAATGCCTCGAAAACGGCTCTATTTTCATATAAT
TTCACGCCGACTTGCGGCTACTTTGGCACAGAACGCCAGCTTTTGGAAAG
CAATAATTTTTATTGCAACATTGAACCTTTATTTGCAACTAGAAACTAGA
TTTCGAGAATCATCGGGCGGGGCGGCTGAGGATCTGGCATTTCGTCCGTA
AGATCGGTTATTCGCAATGGAGGAATATGATATTCGAACCAAATGGCGGG
TGAAGTGCCTCGGCATGGAGCTCCATTTTCTTCGAATCTTATGTTTTGAC
ATTGCGAGTCTGAAATGGATGTTGCCTGATCTCCAGCCGCCCCGCACAAC
CGTTGATTCTCACAACCGCCGGCTCCACTTTGTGCCGGTCAGCGGAGAAA
AAGCGATTATTTGGCTATCAAAAGATATGATCACTGTGTTGAGAGACATG
GCAATCATCGCTATTGTAACCATATATTTGCTGATTTTTCGTCTGATCCT
GGTCCTTTGTGAAGCTAGCAAAAAACCCCCCGCCCGGTGAATGCCCACTT
AGATCCTTTTGCAGGAGGATTTCGACGGCCCTGAAGGTGGGCGCCACCCG
TTTCCGGTAGCGGCTTCGGCTGCTTCCGGTTTCCGGTGTCGCAACCCTTC
GCGATGTCCCCCGTGCGAGTGGAGCTACAGTGGGCGTGAGCCGGGCAAAA
CCTAAATTTCTTCGGAGATTTAAAAAACCAACAAATTTTTTGACTTTTGT
CAAAACAATTCGAACCCACATAGCACTACGATGGCTAACGATTCGCCATC
CGTGCGGTTGGCACGCCAAAACTGTCTCTTCGAGATCACGGGCCTAGGGC
TGTTTAACATTCGACCCAAGCGATTTCGCGACAGGCTTCGGCACGCCAGT
ATATAACCCAAAACACACAAACGTCAGGGGCTGGAACGCGTCACTGCCGT
GCTCCTCCAGCCGGCACAGTCATTCCCCGCCCCCACACCAAGCAAAACCG
GCCGCTTGTGCAGATGACATAGGCGCGACCAGCCAACTGACCCGGCTGAC
CAGACTTGCACCGTGCGCCATCAACTGGAATCTTGGCCACAAGCACAGCA
ATAGTTTGGCCCGCTATTCCCACACAGAAACCCAGAGTGGGGGCCTATGG
AAGACCACAAGTGGTTGCGTGGAACTGCTAAAAATATAAAACTGTAAAAC
TAAAGACTGAAACTAGAAAACAACCATTAAACTCAGAAACGGAAAAAAAA
AAAAAAAAAAA
LD41905.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-RA | 2372 | Arc1-RA | 27..2372 | 1..2346 | 11730 | 100 | Plus |
CG10102-RA | 549 | CG10102-RA | 86..549 | 370..833 | 2305 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 10245227..10247569 | 2342..1 | 11545 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 10247734..10249068 | 1704..370 | 6660 | 99.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14357923..14360268 | 2346..1 | 11730 | 100 | Minus |
2R | 25286936 | 2R | 14360433..14361767 | 1704..370 | 6660 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 14359122..14361467 | 2346..1 | 11730 | 100 | Minus |
2R | 25260384 | 2R | 14361632..14362966 | 1704..370 | 6660 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-16 02:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2820 | 594..1020 | 176 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2748 | 682..1098 | 166 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2539 | 758..1018 | 144 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2400 | 934..1020 | 139 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2346 | 985..1020 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6758 | 985..1020 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6864 | 926..1018 | 122 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6899 | 828..1020 | 121 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6639..6821 | 842..1020 | 119 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6854 | 911..1020 | 119 | 61.1 | Plus |
F-element | 4708 | F-element F 4708bp | 2897..3013 | 810..924 | 119 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6779 | 983..1020 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6800 | 983..1020 | 118 | 78.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1136 | 959..1020 | 118 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1111..1148 | 983..1020 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6833 | 924..1020 | 117 | 63 | Plus |
LD41905.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:21 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 10245227..10247569 | 1..2342 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:24 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 1..765 | 69..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:34 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 1..765 | 69..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:38 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 1..765 | 69..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:34 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 1..765 | 69..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:26 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 1..765 | 69..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:47 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 27..2368 | 1..2342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:34 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 27..2368 | 1..2342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:38 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 30..2371 | 1..2342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:35 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 27..2368 | 1..2342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:26 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc1-RA | 30..2371 | 1..2342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14357927..14360268 | 1..2342 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14357927..14360268 | 1..2342 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14357927..14360268 | 1..2342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:38 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10245432..10247773 | 1..2342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:41 Download gff for
LD41905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14359126..14361467 | 1..2342 | 100 | | Minus |
LD41905.pep Sequence
Translation from 68 to 832
> LD41905.pep
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*
LD41905.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-PA | 254 | CG12505-PA | 1..254 | 1..254 | 1335 | 100 | Plus |
Arc2-PA | 193 | CG13941-PA | 1..189 | 4..202 | 568 | 53.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11668-PA | 250 | GA11668-PA | 1..250 | 1..254 | 954 | 70.5 | Plus |
Dpse\GA12644-PA | 194 | GA12644-PA | 1..190 | 4..202 | 607 | 54.3 | Plus |
LD41905.hyp Sequence
Translation from 68 to 832
> LD41905.hyp
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*
LD41905.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc1-PA | 254 | CG12505-PA | 1..254 | 1..254 | 1335 | 100 | Plus |
Arc2-PA | 193 | CG13941-PA | 1..189 | 4..202 | 568 | 53.3 | Plus |