Clone LD41905 Report

Search the DGRC for LD41905

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:5
Vector:pOT2
Associated Gene/TranscriptArc1-RA
Protein status:LD41905.pep: gold
Preliminary Size:2348
Sequenced Size:2361

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12505 2001-01-01 Release 2 assignment
CG12505 2001-10-10 Blastp of sequenced clone
CG12505 2003-01-01 Sim4 clustering to Release 3
Arc1 2008-04-29 Release 5.5 accounting
Arc1 2008-08-15 Release 5.9 accounting
Arc1 2008-12-18 5.12 accounting

Clone Sequence Records

LD41905.complete Sequence

2361 bp (2361 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061464

> LD41905.complete
CTACACTGGCTTTGTCCGCCGACTGAACCAAGATTAATTTGATCACCTAA
CCTCACACAGCAGCGAAAATGGCCCAGCTTACACAGATGACCAACGAGCA
GCTCCGCGAGCTGATCGAAGCTGTAAGAGCGGCCGCCGTGGGCGCCGCCG
GAAGTGCAGCAGCAGCCGGAGGAGCAGACGCCAGCAGAGGCAAAGGCAAC
TTCTCCGCTTGCACACACAGCTTCGGCGGAACCCGCGACCACGACGTGGT
CGAGGAGTTCATCGGCAACATCGAGACATACAAGGATGTAGAAGGTATCA
GCGACGAGAACGCCCTGAAGGGCATCTCGCTGCTGTTCTACGGTATGGCC
AGCACCTGGTGGCAAGGCGTCCGCAAGGAGGCCACCACGTGGAAGGAAGC
CATCGCTCTCATCCGCGAACACTTCTCGCCCACCAAGCCCGCCTACCAGA
TCTACATGGAATTCTTCCAAAACAAGCAGGACGACCATGACCCCATTGAC
ACCTTCGTCATCCAGAAGCGAGCGCTGCTGGCCCAGCTGCCCAGCGGTCG
CCACGACGAGGAAACGGAACTGGATCTTCTGTTCGGTCTGCTGAACATCA
AGTACCGCAAGCACATCTCCCGCCACAGTGTCCATACCTTCAAGGATCTC
CTGGAACAGGGCCGCATCATCGAGCACAACAACCAGGAGGACGAGGAACA
GCTTGCCACAGCAAAGAACACCCGTGGCTCCAAGCGCACCACCCGCTGCA
CCTACTGCAGTTTCCGGGGGCACACCTTCGACAACTGCCGTAAGCGCCAG
AAGGATCGGCAGGAGGAGCAGCACGAGGAGTAGGCGACAAAAAGAACATC
AAATACCAACAGGCAGCAGCCAACGTCATTGATGACCTCATCGCTGCTGC
CGCCCACCCAAACAGAACTTTTCGTAGCCTCGCCAGCCGATCGACGTCAG
AGAGAGCCCAACAACCGGAGAGCTGGAGATGGGGAGCAGCCACATCAACA
GCAGCAACAGCAGCCACATCTCTTCATACTCTTCATACTCACTGGCAATC
GGCGTGCCGGTAAGCCTCGACTAGCTTCTGAAATCCACAAATCCACGCTG
TTTGTATTGCTATTCGCAATGCCTCGAAAACGGCTCTATTTTCATATAAT
TTCACGCCGACTTGCGGCTACTTTGGCACAGAACGCCAGCTTTTGGAAAG
CAATAATTTTTATTGCAACATTGAACCTTTATTTGCAACTAGAAACTAGA
TTTCGAGAATCATCGGGCGGGGCGGCTGAGGATCTGGCATTTCGTCCGTA
AGATCGGTTATTCGCAATGGAGGAATATGATATTCGAACCAAATGGCGGG
TGAAGTGCCTCGGCATGGAGCTCCATTTTCTTCGAATCTTATGTTTTGAC
ATTGCGAGTCTGAAATGGATGTTGCCTGATCTCCAGCCGCCCCGCACAAC
CGTTGATTCTCACAACCGCCGGCTCCACTTTGTGCCGGTCAGCGGAGAAA
AAGCGATTATTTGGCTATCAAAAGATATGATCACTGTGTTGAGAGACATG
GCAATCATCGCTATTGTAACCATATATTTGCTGATTTTTCGTCTGATCCT
GGTCCTTTGTGAAGCTAGCAAAAAACCCCCCGCCCGGTGAATGCCCACTT
AGATCCTTTTGCAGGAGGATTTCGACGGCCCTGAAGGTGGGCGCCACCCG
TTTCCGGTAGCGGCTTCGGCTGCTTCCGGTTTCCGGTGTCGCAACCCTTC
GCGATGTCCCCCGTGCGAGTGGAGCTACAGTGGGCGTGAGCCGGGCAAAA
CCTAAATTTCTTCGGAGATTTAAAAAACCAACAAATTTTTTGACTTTTGT
CAAAACAATTCGAACCCACATAGCACTACGATGGCTAACGATTCGCCATC
CGTGCGGTTGGCACGCCAAAACTGTCTCTTCGAGATCACGGGCCTAGGGC
TGTTTAACATTCGACCCAAGCGATTTCGCGACAGGCTTCGGCACGCCAGT
ATATAACCCAAAACACACAAACGTCAGGGGCTGGAACGCGTCACTGCCGT
GCTCCTCCAGCCGGCACAGTCATTCCCCGCCCCCACACCAAGCAAAACCG
GCCGCTTGTGCAGATGACATAGGCGCGACCAGCCAACTGACCCGGCTGAC
CAGACTTGCACCGTGCGCCATCAACTGGAATCTTGGCCACAAGCACAGCA
ATAGTTTGGCCCGCTATTCCCACACAGAAACCCAGAGTGGGGGCCTATGG
AAGACCACAAGTGGTTGCGTGGAACTGCTAAAAATATAAAACTGTAAAAC
TAAAGACTGAAACTAGAAAACAACCATTAAACTCAGAAACGGAAAAAAAA
AAAAAAAAAAA

LD41905.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-RA 2372 Arc1-RA 27..2372 1..2346 11730 100 Plus
CG10102-RA 549 CG10102-RA 86..549 370..833 2305 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10245227..10247569 2342..1 11545 99.6 Minus
chr2R 21145070 chr2R 10247734..10249068 1704..370 6660 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:36:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14357923..14360268 2346..1 11730 100 Minus
2R 25286936 2R 14360433..14361767 1704..370 6660 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14359122..14361467 2346..1 11730 100 Minus
2R 25260384 2R 14361632..14362966 1704..370 6660 99.9 Minus
Blast to na_te.dros performed 2019-03-16 02:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2389..2820 594..1020 176 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2748 682..1098 166 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2282..2539 758..1018 144 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2400 934..1020 139 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2346 985..1020 126 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6758 985..1020 126 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6864 926..1018 122 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6701..6899 828..1020 121 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6639..6821 842..1020 119 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6854 911..1020 119 61.1 Plus
F-element 4708 F-element F 4708bp 2897..3013 810..924 119 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6779 983..1020 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6800 983..1020 118 78.9 Plus
roo 9092 roo DM_ROO 9092bp 1076..1136 959..1020 118 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1111..1148 983..1020 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6833 924..1020 117 63 Plus

LD41905.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:21 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10245227..10247569 1..2342 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:24 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 1..765 69..833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:34 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 1..765 69..833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:38 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 1..765 69..833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:34 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 1..765 69..833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:26 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 1..765 69..833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:47 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 27..2368 1..2342 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:34 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 27..2368 1..2342 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:38 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 30..2371 1..2342 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:35 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 27..2368 1..2342 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:26 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
Arc1-RA 30..2371 1..2342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14357927..14360268 1..2342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14357927..14360268 1..2342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:21 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14357927..14360268 1..2342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:38 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10245432..10247773 1..2342 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:41 Download gff for LD41905.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14359126..14361467 1..2342 100   Minus

LD41905.pep Sequence

Translation from 68 to 832

> LD41905.pep
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*

LD41905.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-PA 254 CG12505-PA 1..254 1..254 1335 100 Plus
Arc2-PA 193 CG13941-PA 1..189 4..202 568 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11668-PA 250 GA11668-PA 1..250 1..254 954 70.5 Plus
Dpse\GA12644-PA 194 GA12644-PA 1..190 4..202 607 54.3 Plus

LD41905.hyp Sequence

Translation from 68 to 832

> LD41905.hyp
MAQLTQMTNEQLRELIEAVRAAAVGAAGSAAAAGGADASRGKGNFSACTH
SFGGTRDHDVVEEFIGNIETYKDVEGISDENALKGISLLFYGMASTWWQG
VRKEATTWKEAIALIREHFSPTKPAYQIYMEFFQNKQDDHDPIDTFVIQK
RALLAQLPSGRHDEETELDLLFGLLNIKYRKHISRHSVHTFKDLLEQGRI
IEHNNQEDEEQLATAKNTRGSKRTTRCTYCSFRGHTFDNCRKRQKDRQEE
QHEE*

LD41905.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Arc1-PA 254 CG12505-PA 1..254 1..254 1335 100 Plus
Arc2-PA 193 CG13941-PA 1..189 4..202 568 53.3 Plus