Clone LD41918 Report

Search the DGRC for LD41918

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:18
Vector:pOT2
Associated Gene/TranscriptRanbp11-RA
Protein status:LD41918.pep: gold
Preliminary Size:3142
Sequenced Size:3397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8212 2001-01-01 Release 2 assignment
CG33139 2001-11-29 Blastp of sequenced clone
CG33139 2003-01-01 Sim4 clustering to Release 3
Ranbp11 2008-04-29 Release 5.5 accounting
Ranbp11 2008-08-15 Release 5.9 accounting
Ranbp11 2008-12-18 5.12 accounting

Clone Sequence Records

LD41918.complete Sequence

3397 bp (3397 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069650

> LD41918.complete
CAGCACGCGCCGCAGAAATTTGCCAATAATTTTCGTCCTCGCAAGCGTCG
CAAGAGGAGGCGTCGTGTGATGGAAATGGCAACGGGAGCAGTATCTGGAG
CAGCCGCAGCGGGTGCTGGAGCGTCGGTGGAGCAGCTGGTAGCCCAGACA
CTGCAGGCGGCCACAAATCCGAGCCATGAGATTGTCCAGAAGGCGGAGGC
GCAGCTGCGCGAGTGGGAGCAGCAGCCGGGCTTCTTTCCCACGATTGCCC
GTCTGAGCATGCGACGAGGTGGCGGCGGCGACGTGGTGTCCAGTACGGAG
GACTCCGAGGTGAAGGTGCGCTGGATGGCGGCTGTCTACCTAAAGAATGG
CGTGGAGCGCTATTGGCGGCCCAATTCGCGGCAGGAACTGCCCGCGGAGC
AAAAGCAGCAGATCCGGGAAGTACTTCTGCGTCACTACGACGCAGAGGAA
GTGCCCCAGGTAGCCCTGCAGGTAGCCGTGCTCCTGGGTCGCCTGGCACG
CACGGATTACCCGCGATTTTGGCCGGATCTGCTGCCGACACTCATGAAGC
AGCTGCAGTCCTGCGGTACGGATGGGGATTCGGCCCTGCAGCAGCGAATT
CTTATTGTCCTACACTATGTCCTCAAGGCCCTGGCCTCACGGCGTCTGAT
GGCCGAGCAGCGTGCCTTCCAGGAGCTGGGCTTACAGATATTTGGATATC
TGGCGTGGGACATTTGGGCACCACTTACGACGCGCTTTTTGCAGCTCGTG
CGAAAGGACGAGGCCATGGCCCTCAATGCCCTTCAACGGGCGTATGTGGT
GATGAGAACCCTGCGCAAGCTGGTGGTCTACGGCTGTGCCAAGCCGTACA
AGTCCACGGATCACATGAACTTTGTGGAGCAGCTTTTCCAGCGGTTGCGA
CAGTGCCTCGAACTGCGCTATGAACTGAAAGTGGGATCGGCCACACCAGG
CACTGCCACGATACTCACCGAATTGGAGCGCTTTGTGATTAAGATGATGA
AGACCCTCAATGAACTGATGGAGCGGCATTCTGTGTCCTTTGCGAGGTTC
GTTCCTGTGGCCCTGGAGTTCAGCTTCCACTATGTGTTCCACGAGGGCAC
CGCCCTCATTTTCGACGCCGGCGATCGCATTAACTTTAAAAACTTTGCCA
TACAGGCGCTGAACATGCTGAAAGGTATCATGCTGAGCGGCAACGATAGC
ATCAGTGCTCCGCCCGAAGGTGGTGCTCACATAGAGGATGAGCTGTTAGC
CAGCGCTGCTCAAAGCCAAGCCAAGTTCTTCACAGCGGAGCGAGTGACCT
ACATCTGTGAGAAGATCGTGACGCACTATTTTCTGCTCACTCAACAGGAG
CTGGAGGAGTGGCAGCAGGATCCAGAGGGCTATGACCAGGACGACGGCGG
TGGTGATGCTTGGAAGTACGCCTTAAGGCCAAGCGTGGAGACCCTTTATT
TCACATGTTTTACTCAGCATTCGCAAGTGATGATTCCGGAGGTGCTCCGT
TTCGTAAGGCGTGCCCAGCAATTGCAGCTGACCCCGGAATCTGACCTGAA
GGCCATTCTACTGAAAGACGCTATCTACAATGCCGTAGGCCAGGCAGCCT
TTCATTTCTTTAACAAGCTGGACTTTGGCGCATGGCTGACATCCCAATTG
CTTGCGGAGCTGCGCGTGGAAGCTCTGAACTTTCGGATCCTACGGCGTCG
CATCATCTGGCTGGTAGGCCATTGGGTTGGCGTCCAGTTGCCCAGAGAAC
TGAGACCGCTGGCTTACGAAGCATGCCTGCATCTTCTCCGGCCGCAGGAG
GACATGCCCACCAGGTTGGCCGCTGCCAGGACGTTGAATCTGTTGATCGA
CGATTTTGAGTTTATGCCGGAAGCGTTCCACCCGTATTTTCCATCCCTCT
TCGAGGCCCTCTTTTTGCTGCTCCATGAGGCCGGCGAGTGCGACACCAAG
ATCGTGGTGCTGGGCACGATGACGCTACTTGTGGAGAAGATGAGCGAGTA
CATCGAGCCGCAGGCATTGCAGTTCATTGCGTATTTACCCCTCCTGTGGC
GCGAGAGCGAGGAACACGACCTTCTGCGCTGCGCCATCATTGGCACCCTA
GAGCAGCTGGTTCGAACGATACGGGATGTCCCAGAGCCCATGAAGCCCTT
CCTCTACAGCGTGATCGAGCTGAGCACGGATCTTCAGCAACCCTCGCACG
TCTACCTCATCGAAGATGGTATCATGCTCTGGCTGGCGGTGATTGGGAAC
TCGACTGCACTGACACCCGAACTACTTGGTCTGTGCGACCACCTTCTGCC
TATTATCGAGATGTCATCGGAGAACCTGCGCACCGTGCTGCAGCTGATTC
ATGCCTATATACTGCTGGACGCTCAGGCCTATCTGAGTCGTTACGGTGAG
GGTTTCGTGGCCTACTGCGTGCGCTCTTTCGAGGACATACGTGTGGAGGG
AATAATTGCCATGCTGCGGATCATCGAGACATGCCTGAAAACGGACGCGG
CGTTGGGACTGCGGCTGGTGCGCCCAGCACTGCCCTTTGTCTTCCAGCAG
GTGTGCCTTAAGCAGGAGTATCCCATGACAATGGGATGGTATCTGACCAT
CGTGGCCCGCACCCTGCTCATTGACCAGTCTGTTTTCATGTCGGTGGTAC
AGCAATTGCCACAAGCGGACGCTTTGGCCCGCATCCTGGACGTTTGGATC
GAGATGTTCCCAATGGTTCCCGACACGCACGCAGAGAAGAGAAAGCTCTT
CTGCCTGGCCTTCGCCTCGATCTTTGGAAGCAATGAGCTGCTGCTTGCTC
GCCTGCCACATATCCTGCAGCTGGTGGACGAAACGTTGGGCGAAGTGATG
GACAAGCAGTACGCCGCCACCGAGGAGGGTGCGTCACAGGCCACGCCTCG
CTTCTATGATTCATTGGTCATTCATGACGAACACGAGCTGGACGATCTGC
AGCAGCAGCTGGGCAGTGGCGGCGGTGTCAGCGAGGAATTTCACACCAAG
GGCTACCCGGCCAAGACCTATCACGACGACCGCCACAGGCAGTTGGTGCT
CAAAGATCCCGTTTACAAGATCCCCCTTACCGAGTATCTCAAGTGGCAGC
TGCAGTCGTTGCAGGCACAGCTGGGATCCCAGCGATATGAGCAGGTAATG
TGCTCCGTGGTTCCCGAGGTACGGGAAAGGATTACCATGTACATAGAGCA
GACTGTGCCCAAGGCCTGTGTGGTGTGCGCGGGCTCCGGCTCCGGATCGG
GAGCGCCTGCGGACAGGACGCTCTCCGAACAGGTGGAGTCCGGCTGATTC
CGGACTGCTGTGCTTTAAAAGCTTTCTACGCTAAGTTATTAATGTATTTT
GTATTGAAATTATATATTTTTAATTGTTAAAAAAAAAAAAAAAAAAA

LD41918.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp11-RA 3482 Ranbp11-RA 100..3482 1..3383 16915 100 Plus
nc_7057.a 2301 nc_7057.a 160..2134 1975..1 9875 100 Minus
nc_7057.a 2301 nc_7057.a 12..160 2187..2039 745 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11569916..11572102 1..2187 10830 99.7 Plus
chr2R 21145070 chr2R 11573404..11574597 2185..3378 5910 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15682736..15684922 1..2187 10935 100 Plus
2R 25286936 2R 15686222..15687420 2185..3383 5995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15683935..15686121 1..2187 10935 100 Plus
2R 25260384 2R 15687421..15688619 2185..3383 5995 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:01:42 has no hits.

LD41918.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:02:24 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11569916..11572102 1..2187 99 -> Plus
chr2R 11573407..11574597 2188..3378 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:29 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 1..3228 70..3297 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:30 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 1..3228 70..3297 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:29 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 1..3228 70..3297 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:07 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 1..3228 70..3297 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:06 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 1..3228 70..3297 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:10:17 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 21..3398 1..3378 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:30 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 21..3398 1..3378 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:29 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 18..3395 1..3378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:07 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 21..3398 1..3378 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:06 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp11-RA 18..3395 1..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:24 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15682736..15684922 1..2187 100 -> Plus
2R 15686225..15687415 2188..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:24 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15682736..15684922 1..2187 100 -> Plus
2R 15686225..15687415 2188..3378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:24 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15682736..15684922 1..2187 100 -> Plus
2R 15686225..15687415 2188..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:29 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11570241..11572427 1..2187 100 -> Plus
arm_2R 11573730..11574920 2188..3378 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:16 Download gff for LD41918.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15683935..15686121 1..2187 100 -> Plus
2R 15687424..15688614 2188..3378 100   Plus

LD41918.hyp Sequence

Translation from 0 to 3296

> LD41918.hyp
QHAPQKFANNFRPRKRRKRRRRVMEMATGAVSGAAAAGAGASVEQLVAQT
LQAATNPSHEIVQKAEAQLREWEQQPGFFPTIARLSMRRGGGGDVVSSTE
DSEVKVRWMAAVYLKNGVERYWRPNSRQELPAEQKQQIREVLLRHYDAEE
VPQVALQVAVLLGRLARTDYPRFWPDLLPTLMKQLQSCGTDGDSALQQRI
LIVLHYVLKALASRRLMAEQRAFQELGLQIFGYLAWDIWAPLTTRFLQLV
RKDEAMALNALQRAYVVMRTLRKLVVYGCAKPYKSTDHMNFVEQLFQRLR
QCLELRYELKVGSATPGTATILTELERFVIKMMKTLNELMERHSVSFARF
VPVALEFSFHYVFHEGTALIFDAGDRINFKNFAIQALNMLKGIMLSGNDS
ISAPPEGGAHIEDELLASAAQSQAKFFTAERVTYICEKIVTHYFLLTQQE
LEEWQQDPEGYDQDDGGGDAWKYALRPSVETLYFTCFTQHSQVMIPEVLR
FVRRAQQLQLTPESDLKAILLKDAIYNAVGQAAFHFFNKLDFGAWLTSQL
LAELRVEALNFRILRRRIIWLVGHWVGVQLPRELRPLAYEACLHLLRPQE
DMPTRLAAARTLNLLIDDFEFMPEAFHPYFPSLFEALFLLLHEAGECDTK
IVVLGTMTLLVEKMSEYIEPQALQFIAYLPLLWRESEEHDLLRCAIIGTL
EQLVRTIRDVPEPMKPFLYSVIELSTDLQQPSHVYLIEDGIMLWLAVIGN
STALTPELLGLCDHLLPIIEMSSENLRTVLQLIHAYILLDAQAYLSRYGE
GFVAYCVRSFEDIRVEGIIAMLRIIETCLKTDAALGLRLVRPALPFVFQQ
VCLKQEYPMTMGWYLTIVARTLLIDQSVFMSVVQQLPQADALARILDVWI
EMFPMVPDTHAEKRKLFCLAFASIFGSNELLLARLPHILQLVDETLGEVM
DKQYAATEEGASQATPRFYDSLVIHDEHELDDLQQQLGSGGGVSEEFHTK
GYPAKTYHDDRHRQLVLKDPVYKIPLTEYLKWQLQSLQAQLGSQRYEQVM
CSVVPEVRERITMYIEQTVPKACVVCAGSGSGSGAPADRTLSEQVESG*

LD41918.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp11-PA 1075 CG33139-PA 1..1075 24..1098 5529 100 Plus

LD41918.pep Sequence

Translation from 69 to 3296

> LD41918.pep
MEMATGAVSGAAAAGAGASVEQLVAQTLQAATNPSHEIVQKAEAQLREWE
QQPGFFPTIARLSMRRGGGGDVVSSTEDSEVKVRWMAAVYLKNGVERYWR
PNSRQELPAEQKQQIREVLLRHYDAEEVPQVALQVAVLLGRLARTDYPRF
WPDLLPTLMKQLQSCGTDGDSALQQRILIVLHYVLKALASRRLMAEQRAF
QELGLQIFGYLAWDIWAPLTTRFLQLVRKDEAMALNALQRAYVVMRTLRK
LVVYGCAKPYKSTDHMNFVEQLFQRLRQCLELRYELKVGSATPGTATILT
ELERFVIKMMKTLNELMERHSVSFARFVPVALEFSFHYVFHEGTALIFDA
GDRINFKNFAIQALNMLKGIMLSGNDSISAPPEGGAHIEDELLASAAQSQ
AKFFTAERVTYICEKIVTHYFLLTQQELEEWQQDPEGYDQDDGGGDAWKY
ALRPSVETLYFTCFTQHSQVMIPEVLRFVRRAQQLQLTPESDLKAILLKD
AIYNAVGQAAFHFFNKLDFGAWLTSQLLAELRVEALNFRILRRRIIWLVG
HWVGVQLPRELRPLAYEACLHLLRPQEDMPTRLAAARTLNLLIDDFEFMP
EAFHPYFPSLFEALFLLLHEAGECDTKIVVLGTMTLLVEKMSEYIEPQAL
QFIAYLPLLWRESEEHDLLRCAIIGTLEQLVRTIRDVPEPMKPFLYSVIE
LSTDLQQPSHVYLIEDGIMLWLAVIGNSTALTPELLGLCDHLLPIIEMSS
ENLRTVLQLIHAYILLDAQAYLSRYGEGFVAYCVRSFEDIRVEGIIAMLR
IIETCLKTDAALGLRLVRPALPFVFQQVCLKQEYPMTMGWYLTIVARTLL
IDQSVFMSVVQQLPQADALARILDVWIEMFPMVPDTHAEKRKLFCLAFAS
IFGSNELLLARLPHILQLVDETLGEVMDKQYAATEEGASQATPRFYDSLV
IHDEHELDDLQQQLGSGGGVSEEFHTKGYPAKTYHDDRHRQLVLKDPVYK
IPLTEYLKWQLQSLQAQLGSQRYEQVMCSVVPEVRERITMYIEQTVPKAC
VVCAGSGSGSGAPADRTLSEQVESG*

LD41918.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11495-PA 1078 GF11495-PA 2..1078 11..1075 5035 89.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20539-PA 1071 GG20539-PA 3..1071 9..1075 5465 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22822-PA 1075 GH22822-PA 3..1051 19..1057 4143 76.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Impbeta11-PA 1075 CG33139-PA 1..1075 1..1075 5529 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21200-PA 1055 GI21200-PA 2..1030 18..1054 4277 79.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11765-PA 740 GL11765-PA 1..740 330..1075 3455 89.4 Plus
Dper\GL11764-PA 319 GL11764-PA 14..319 20..328 1302 79.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17313-PA 1070 GA17313-PA 14..1070 20..1075 4807 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21630-PA 1087 GM21630-PA 1..946 1..946 4954 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11132-PA 1075 GD11132-PA 1..1075 1..1075 5613 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20801-PA 1063 GJ20801-PA 2..1050 18..1063 4394 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17845-PA 1089 GK17845-PA 2..1058 18..1053 4474 81.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11724-PA 929 GE11724-PA 446..929 595..1075 2397 95.5 Plus
Dyak\GE11724-PA 929 GE11724-PA 1..440 3..441 2139 96.1 Plus