Clone LD41948 Report

Search the DGRC for LD41948

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:48
Vector:pOT2
Associated Gene/TranscriptCG32425-RA
Protein status:LD41948.pep: gold
Sequenced Size:2856

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32425 2003-02-13 Blastp of sequenced clone
CG32425 2008-04-29 Release 5.5 accounting
CG32425 2008-08-15 Release 5.9 accounting
CG32425 2008-12-18 5.12 accounting

Clone Sequence Records

LD41948.complete Sequence

2856 bp (2856 high quality bases) assembled on 2003-02-13

GenBank Submission: BT010040

> LD41948.complete
TTCTTCCTTTGCGACCAGGAGCTTTTCTGCAGCAGTTTCCTCCGAAACTT
ACGCCCGTGCAGATTTATGGCCGGAAAATCATAGCACCGCCAGCAACGTC
GAGCTAATGGAGGCCATGAAGAAATTGGACGCGGACCTGGTGGCCCTTTT
CGCCACTGCTGCCTCCGCCGAACCTCTTAAGATTAGGAAACAGCAGGAGG
TCCTGTGGCCGGGAGCCGAGCCGGAGCAAACCGCCCAGGAATCGGAGGAT
GATGAGCTGGTGATGACGCCGGAGCTCTTCCGCAGCTGCAACGCCTTGCA
GCTGCACTTGGAGGCACTGACATTGCAGCCGGAGGGAACCCAACGCATGG
AACTGGTTCAGAACGAAGTGCGACCCATTTTCACCGTGGAGTGCCAGCTG
TCGGGGGACTTGATCCGTAAAGTGCCGCGCCAACCGATGTTCCACATCAT
GCAGTTCGAGTCGGAGAAGTTCCAGAGCCTGACGCAGTGCACCCGTTTCG
GGCAGACGGCTCAGCGTCAGGTCGATATGGAAGATAAGAGCCTGCAGGAT
CCGGAACAGAGTGCTGGCCATGTAGACATCACGGTTTGGTGGCGCGAACC
CGGCACCTGTCTCAACGAAATGCTCGGCATGGGCCGCCTGGAGCTCAGGG
AGCTCTACAGGGCATCCCTGTTGGAGCAGTGCAAGTGCATTGCCATTCGG
CGACGCGACGTCCACCTGGGTAGCGTGTACTTGAAGATCAGTCTGCTTCA
GAATTTGAATGGTAGCCCGGAGCAGCCGCAGCAACAGCAGCAGCAGCCGG
GCCAAAAGAACGAAAGTGGAAACAAGGCAGCAGTTAATTGCAACTCGAAG
GCCGTTTTAACGCCCCCTCAGCCGCCGGCGCCGCCACCTCCTCCTCCCCA
AGCCAACAACAACAGCAAGGCCATCTTGGAGTGCATCAACTTCATGGCAG
AGACCAATAAAGTCCGTCTCCTCAGGGGTTATCTCTACGCCGGGGAGCTG
CGTCAATTAACGGCGGGCGGTAGTAAGACCGCGTGCCAGGAGCTATCACT
TGAGCCCTTCTGGCAGCCGCAGCCACTGCTGAGCAAGTTAACCGATGGGG
GATCCTTCGAGCTGCAGGAGCAATTCGCCATCATCAATGATGAGCGCTTC
CTGCAGAGCGTCGAGCGGCAGCAGCTGGTCATGGAGCTGCGTCCATTGGG
AGGAGTCGTACGACTTCCGCTGCACCAGTTCTTCATCGCCTACAGAGACT
CCAGCATCACAAATCACCTGTGCAAGGGAAAGCTACCAGTGATCTCCATC
GATGGCTGGGCACCAATTGTCAGTGCTGAGAACAAGACGCCTCTGGGCGA
GCTCAAGGTGCTTCTGGCCATTGGAAGTGAGTCGCAGATTGCTCAACTGA
AGCAGCTGCGTGGCTTCGACCATGACAACAACCAAGTACCGGCTCCAAGC
CGGACCACAGACTTACTCGACATGCTTCAAAATGCCATCGCAGCTCCGAC
GCCGAATATCGCAGGTCCAGTAATGCCGCCGCCACCGGCTCCTCCAGCGC
CCAGTACCTTTAGCTTCCAGTTGCGCATCGTGGGAGCTGCTGGACTGCCC
CTAAATCCCGGCTATGGGAAATCGAAGAAGCAAGTAAAACGTCAGTCGGC
AGCCAAGCGCTTCCCGCCCAACGAACCTCCCAACACCTATGTGACCTTCC
AGGCCATCAGTTGCAATAGTCAGACCTATAAGTCGCACGAAGGATTGGTG
TACGCCACACCAATTGTACCCAAATCGACGAAGCCCCAGTGGCTTAGCAA
GTTCCGCGTGGACGTGAGTCGCGATTATCGCAGCAATCCCCAGAAGCTTT
TCATTCTGAAGCTTTGGAAAAAGGCGGTTGTTAGCCCAAATGGCATCACA
GAGCCGTCTCCCCATGAAGATGCCATAATAGGATTCGCTGCACTTAATCT
TAACCAAAAACAAGCGGGCGGAGGCTTTCCCAGCGGATGGCATAACATAG
TAGACTTCAATGGACGTGTGACTGGGGGAATCGAGGCGCACGTGGAGCCC
ATATCGCCCAGTGTAGATACCGTAATCGATCAGTTCGAGAAGTCCATGGA
ACTGGGTCACTTGCAGTTGGGCCAGGCCATCAAGCGCAAATACACGGAGC
TGGAGGAGATCTCGCAGAGATTGCGATCTCGGCTGGTGGATGTGACGGGG
GAAACGCTGAAGTTCCCGGAATTCGATGTCGACTCCGCATTGGACAGTTG
GCAACAGGAGGGAGATGACGATGATTTAGCGGAGGACTTTGAACGCTCCC
TACGCACTCCCACGCCCCCTGGCTCGCCAACGCCCTCCACCAGCACCGCC
GCACAAAATCTCAGAAACTCGAACGGTCAGGAATAGCCCAGGGCCAAAAG
TCAGTTAAGAATGTTTTTTCCTCTCTCCACATCTCGATGTCGTCTCTGAT
ATTGGCTCAAATGGTAGCTATAGTTAACCATCTAGATTTAGGCAATATAT
ATATATATAATGCGCGGATCTTAATCTGATCTGATATTATGCTGTACTTA
AATTGGCATCCCAGTTTTGCCTCGATTCACCGTCTTATGGCTGTCTATAT
AGCATAAAATCAAAGCTAGCAACGATCACCCAGCGATCGTTTCATTGAGT
TACAAATCGTCGATTGAATATTGTTTTAAGTCACGAGGATTTTTCCCAGC
AACCACACGGAATATGTATTAGTTTCGGAACTGTGTTAATCACCTAAGTA
TTTAGACACTATTACCTAATAAAACTTTAAATAAAATTACAATTGCTAAA
GCAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

LD41948.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-RE 3083 CG32425-RE 70..2881 1..2812 14060 100 Plus
CG32425.a 2818 CG32425.a 89..2818 83..2812 13650 100 Plus
CG32425.b 3241 CG32425.b 328..3056 84..2812 13645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20502128..20503097 1838..2807 4835 99.9 Plus
chr3L 24539361 chr3L 20499020..20499769 84..833 3750 100 Plus
chr3L 24539361 chr3L 20501509..20502065 1281..1837 2785 100 Plus
chr3L 24539361 chr3L 20500924..20501375 831..1282 2260 100 Plus
chr3L 24539361 chr3L 20486323..20486406 1..84 420 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20513138..20514112 1838..2812 4875 100 Plus
3L 28110227 3L 20510030..20510779 84..833 3750 100 Plus
3L 28110227 3L 20512519..20513075 1281..1837 2785 100 Plus
3L 28110227 3L 20511934..20512385 831..1282 2260 100 Plus
3L 28110227 3L 20497343..20497426 1..84 420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20506238..20507212 1838..2812 4875 100 Plus
3L 28103327 3L 20503130..20503879 84..833 3750 100 Plus
3L 28103327 3L 20505619..20506175 1281..1837 2785 100 Plus
3L 28103327 3L 20505034..20505485 831..1282 2260 100 Plus
3L 28103327 3L 20490443..20490526 1..84 420 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:59:49 has no hits.

LD41948.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:45 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20486323..20486405 1..83 100 -> Plus
chr3L 20499020..20499769 84..833 96 -> Plus
chr3L 20500927..20501375 834..1282 100 -> Plus
chr3L 20501511..20502065 1283..1837 100 -> Plus
chr3L 20502128..20503097 1838..2807 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:53 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 1..2280 107..2386 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:47 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 1..2280 107..2386 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:43:18 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 1..2280 107..2386 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:54 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RA 1..2280 107..2386 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:09 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 1..2280 107..2386 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:53 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 1..2807 1..2807 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:47 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 1..2807 1..2807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:18 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 21..2827 1..2807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:55 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 1..2807 1..2807 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:09 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
CG32425-RE 21..2827 1..2807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:45 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497343..20497425 1..83 100 -> Plus
3L 20510030..20510779 84..833 100 -> Plus
3L 20511937..20512385 834..1282 100 -> Plus
3L 20512521..20513075 1283..1837 100 -> Plus
3L 20513138..20514107 1838..2807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:45 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497343..20497425 1..83 100 -> Plus
3L 20510030..20510779 84..833 100 -> Plus
3L 20511937..20512385 834..1282 100 -> Plus
3L 20512521..20513075 1283..1837 100 -> Plus
3L 20513138..20514107 1838..2807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:45 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20497343..20497425 1..83 100 -> Plus
3L 20510030..20510779 84..833 100 -> Plus
3L 20511937..20512385 834..1282 100 -> Plus
3L 20512521..20513075 1283..1837 100 -> Plus
3L 20513138..20514107 1838..2807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:18 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20490443..20490525 1..83 100 -> Plus
arm_3L 20503130..20503879 84..833 100 -> Plus
arm_3L 20505037..20505485 834..1282 100 -> Plus
arm_3L 20505621..20506175 1283..1837 100 -> Plus
arm_3L 20506238..20507207 1838..2807 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:42 Download gff for LD41948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20503130..20503879 84..833 100 -> Plus
3L 20505037..20505485 834..1282 100 -> Plus
3L 20505621..20506175 1283..1837 100 -> Plus
3L 20506238..20507207 1838..2807 100   Plus
3L 20490443..20490525 1..83 100 -> Plus

LD41948.hyp Sequence

Translation from 0 to 2385

> LD41948.hyp
SSFATRSFSAAVSSETYARADLWPENHSTASNVELMEAMKKLDADLVALF
ATAASAEPLKIRKQQEVLWPGAEPEQTAQESEDDELVMTPELFRSCNALQ
LHLEALTLQPEGTQRMELVQNEVRPIFTVECQLSGDLIRKVPRQPMFHIM
QFESEKFQSLTQCTRFGQTAQRQVDMEDKSLQDPEQSAGHVDITVWWREP
GTCLNEMLGMGRLELRELYRASLLEQCKCIAIRRRDVHLGSVYLKISLLQ
NLNGSPEQPQQQQQQPGQKNESGNKAAVNCNSKAVLTPPQPPAPPPPPPQ
ANNNSKAILECINFMAETNKVRLLRGYLYAGELRQLTAGGSKTACQELSL
EPFWQPQPLLSKLTDGGSFELQEQFAIINDERFLQSVERQQLVMELRPLG
GVVRLPLHQFFIAYRDSSITNHLCKGKLPVISIDGWAPIVSAENKTPLGE
LKVLLAIGSESQIAQLKQLRGFDHDNNQVPAPSRTTDLLDMLQNAIAAPT
PNIAGPVMPPPPAPPAPSTFSFQLRIVGAAGLPLNPGYGKSKKQVKRQSA
AKRFPPNEPPNTYVTFQAISCNSQTYKSHEGLVYATPIVPKSTKPQWLSK
FRVDVSRDYRSNPQKLFILKLWKKAVVSPNGITEPSPHEDAIIGFAALNL
NQKQAGGGFPSGWHNIVDFNGRVTGGIEAHVEPISPSVDTVIDQFEKSME
LGHLQLGQAIKRKYTELEEISQRLRSRLVDVTGETLKFPEFDVDSALDSW
QQEGDDDDLAEDFERSLRTPTPPGSPTPSTSTAAQNLRNSNGQE*

LD41948.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PA 759 CG32425-PA 1..759 36..794 3959 100 Plus
CG32425-PE 759 CG32425-PE 1..759 36..794 3959 100 Plus
CG32425-PC 480 CG32425-PC 1..480 315..794 2500 100 Plus
CG32425-PF 530 CG32425-PF 278..526 29..277 1283 100 Plus
CG32425-PB 246 CG32425-PB 1..242 36..277 1251 100 Plus

LD41948.pep Sequence

Translation from 106 to 2385

> LD41948.pep
MEAMKKLDADLVALFATAASAEPLKIRKQQEVLWPGAEPEQTAQESEDDE
LVMTPELFRSCNALQLHLEALTLQPEGTQRMELVQNEVRPIFTVECQLSG
DLIRKVPRQPMFHIMQFESEKFQSLTQCTRFGQTAQRQVDMEDKSLQDPE
QSAGHVDITVWWREPGTCLNEMLGMGRLELRELYRASLLEQCKCIAIRRR
DVHLGSVYLKISLLQNLNGSPEQPQQQQQQPGQKNESGNKAAVNCNSKAV
LTPPQPPAPPPPPPQANNNSKAILECINFMAETNKVRLLRGYLYAGELRQ
LTAGGSKTACQELSLEPFWQPQPLLSKLTDGGSFELQEQFAIINDERFLQ
SVERQQLVMELRPLGGVVRLPLHQFFIAYRDSSITNHLCKGKLPVISIDG
WAPIVSAENKTPLGELKVLLAIGSESQIAQLKQLRGFDHDNNQVPAPSRT
TDLLDMLQNAIAAPTPNIAGPVMPPPPAPPAPSTFSFQLRIVGAAGLPLN
PGYGKSKKQVKRQSAAKRFPPNEPPNTYVTFQAISCNSQTYKSHEGLVYA
TPIVPKSTKPQWLSKFRVDVSRDYRSNPQKLFILKLWKKAVVSPNGITEP
SPHEDAIIGFAALNLNQKQAGGGFPSGWHNIVDFNGRVTGGIEAHVEPIS
PSVDTVIDQFEKSMELGHLQLGQAIKRKYTELEEISQRLRSRLVDVTGET
LKFPEFDVDSALDSWQQEGDDDDLAEDFERSLRTPTPPGSPTPSTSTAAQ
NLRNSNGQE*

LD41948.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10352-PA 739 GF10352-PA 1..739 1..759 2646 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16125-PA 758 GG16125-PA 1..758 1..759 3537 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14555-PA 879 GH14555-PA 81..848 1..733 2294 62.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32425-PA 759 CG32425-PA 1..759 1..759 3959 100 Plus
CG32425-PE 759 CG32425-PE 1..759 1..759 3959 100 Plus
CG32425-PC 480 CG32425-PC 1..480 280..759 2500 100 Plus
CG32425-PB 246 CG32425-PB 1..242 1..242 1251 100 Plus
CG32425-PF 530 CG32425-PF 285..526 1..242 1251 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13403-PA 967 GI13403-PA 195..962 1..749 2264 59.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12797-PA 577 GL12797-PA 3..569 2..546 1653 62.4 Plus
Dper\GL20474-PA 93 GL20474-PA 1..58 625..678 224 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16893-PA 764 GA16893-PA 1..742 1..733 2617 70.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22304-PA 742 GM22304-PA 1..742 1..759 3525 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14897-PA 758 GD14897-PA 1..758 1..759 3949 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11527-PA 780 GJ11527-PA 1..751 1..738 2440 65.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12297-PA 907 GK12297-PA 38..883 1..733 2197 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19693-PA 758 GE19693-PA 1..758 1..759 3515 93.3 Plus
Dyak\GE23239-PA 367 GE23239-PA 1..367 393..759 1706 93.5 Plus