Clone LD41958 Report

Search the DGRC for LD41958

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:58
Vector:pOT2
Associated Gene/TranscriptCG5168-RA
Protein status:LD41958.pep: gold
Preliminary Size:1746
Sequenced Size:1638

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5168 2001-01-01 Release 2 assignment
CG5168 2001-07-04 Blastp of sequenced clone
CG5168 2003-01-01 Sim4 clustering to Release 3
CG5168 2008-04-29 Release 5.5 accounting
CG5168 2008-08-15 Release 5.9 accounting
CG5168 2008-12-18 5.12 accounting

Clone Sequence Records

LD41958.complete Sequence

1638 bp (1638 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051942

> LD41958.complete
AACAAAGTTCAGTATATTTAATGTTAAACAAAATAACACAGTTTTGTTAA
TTGATTGTGAATCACGTATCTCCATTCACCTTCCCCAGTCCGAGAATCGG
ATTGTTTATAACCGCATTATCATCGAGTGCGTTAAATAGGGCGTAGGCGT
ACCATCGGACTGGATCCACCTTAAATAATATGGCTGCCGAGATAAAACCA
GCTCAGCGGACCAACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATT
GCTGAGTAAGCTGGAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAA
TTCCGGGCGAAAACGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGC
GTTTGGCTAAAACGCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTA
TATGCCTTCCGGCTGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACC
TGTACGTCGGCCAGGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAA
GACTGCAATCGCCTGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCG
GGTCATGGCCGTGGTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCG
GCAAAGATAAGCAGTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTG
GGCGGATACAACTTTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTT
GGCCAAGTATGCCTTTGTGGGCGATCATGCTGGACAGATAACAATGCTAA
GGTGCGATGTTCAGGGAGTGCAACTAATTACCACTTTCAATGGACATTCG
GCGGAAATCCGGTGCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAG
CGGAGCTTGCGATCAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTG
GCACCATTTACGAGCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCG
TACGCGAATCACACGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGT
GGTTTTTTGGGAAATGAATGCAATGCGGAAAGAGGTTCCTGGCTGGGTGG
ATACCAACAACTGTCAGCTTTGCTCCAGGCCCTTCTTCTGGAACTTCCGC
TCAATGATGGATCAAAAGCAGCTGGGAATACGACAGCATCATTGTCGCCA
CTGCGGCAAAGCCGTGTGCGACAACTGTTCCACCAATCGCATTAACATAC
CCATAATGGGCTTCGAGTTTGATGTGCGTACCTGTGATCCGTGCTACAAA
CAACTTCAGACAGTCGAGCGCCCCTCGCTGGCTTCATTCAATGACGCCAA
GCATTCGATCGTCTACATGGACCTGGACGAGGACAGAAAGCGCCTGTTGA
CAGTGGGCCAGGACAGGCTCATCAAGATCTGGGATCTCTCCAACATCTGG
GCATAAAACATCCTGTACGCACACGCACGTACCAAAGGTATAATCATTCA
CGAGGCGTTTCGGTCTTAACTGGAACACCCAATTAACGAACGATGTGGCT
GGCAACGACCAAATCCAGTCCCTGCTGCTTAGGTTCTCATATAATTGATG
TAAAGCAATAATCATTGTATGTACGTATGCTTACATTCAACACATAAATA
CACGAATCCATCGATTAAAAAAAAAAAAAAAAAAAAAA

LD41958.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-RA 1708 CG5168-RA 91..1708 1..1618 8090 100 Plus
CG5168.b 1599 CG5168.b 70..1599 89..1618 7650 100 Plus
CG5168.c 1669 CG5168.c 392..1669 341..1618 6390 100 Plus
CG5168.c 1669 CG5168.c 70..321 89..340 1260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10423822..10424313 1125..1616 2460 100 Plus
chr2L 23010047 chr2L 10422582..10422931 341..690 1750 100 Plus
chr2L 23010047 chr2L 10422172..10422511 1..340 1700 100 Plus
chr2L 23010047 chr2L 10423562..10423762 926..1126 990 99.5 Plus
chr2L 23010047 chr2L 10423374..10423501 801..928 640 100 Plus
chr2L 23010047 chr2L 10423202..10423314 689..801 565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10424991..10425484 1125..1618 2470 100 Plus
2L 23513712 2L 10423751..10424100 341..690 1750 100 Plus
2L 23513712 2L 10423341..10423680 1..340 1700 100 Plus
2L 23513712 2L 10424731..10424931 926..1126 1005 100 Plus
2L 23513712 2L 10424543..10424670 801..928 640 100 Plus
2L 23513712 2L 10424371..10424483 689..801 565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10424991..10425484 1125..1618 2470 100 Plus
2L 23513712 2L 10423751..10424100 341..690 1750 100 Plus
2L 23513712 2L 10423341..10423680 1..340 1700 100 Plus
2L 23513712 2L 10424731..10424931 926..1126 1005 100 Plus
2L 23513712 2L 10424543..10424670 801..928 640 100 Plus
2L 23513712 2L 10424371..10424483 689..801 565 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:32:39 has no hits.

LD41958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:24 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10422172..10422511 1..340 100 -> Plus
chr2L 10422582..10422929 341..688 100 -> Plus
chr2L 10423202..10423314 689..801 100 -> Plus
chr2L 10423375..10423501 802..928 100 -> Plus
chr2L 10423565..10423761 929..1125 99 -> Plus
chr2L 10423823..10424313 1126..1616 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:32 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 1..1227 180..1406 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:25 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RB 1..1227 180..1406 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:52 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 1..1227 180..1406 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:53 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 1..1227 180..1406 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:36 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 1..1227 180..1406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:39 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 27..1642 1..1616 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:25 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 27..1642 1..1616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:52 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 8..1623 1..1616 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:53 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 27..1642 1..1616 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:36 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 8..1623 1..1616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:24 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10423341..10423680 1..340 100 -> Plus
2L 10423751..10424098 341..688 100 -> Plus
2L 10424371..10424483 689..801 100 -> Plus
2L 10424544..10424670 802..928 100 -> Plus
2L 10424734..10424930 929..1125 100 -> Plus
2L 10424992..10425482 1126..1616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:24 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10423341..10423680 1..340 100 -> Plus
2L 10423751..10424098 341..688 100 -> Plus
2L 10424371..10424483 689..801 100 -> Plus
2L 10424544..10424670 802..928 100 -> Plus
2L 10424734..10424930 929..1125 100 -> Plus
2L 10424992..10425482 1126..1616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:24 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10423341..10423680 1..340 100 -> Plus
2L 10423751..10424098 341..688 100 -> Plus
2L 10424371..10424483 689..801 100 -> Plus
2L 10424544..10424670 802..928 100 -> Plus
2L 10424734..10424930 929..1125 100 -> Plus
2L 10424992..10425482 1126..1616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:52 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10423341..10423680 1..340 100 -> Plus
arm_2L 10423751..10424098 341..688 100 -> Plus
arm_2L 10424371..10424483 689..801 100 -> Plus
arm_2L 10424544..10424670 802..928 100 -> Plus
arm_2L 10424734..10424930 929..1125 100 -> Plus
arm_2L 10424992..10425482 1126..1616 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:53 Download gff for LD41958.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10423341..10423680 1..340 100 -> Plus
2L 10423751..10424098 341..688 100 -> Plus
2L 10424371..10424483 689..801 100 -> Plus
2L 10424544..10424670 802..928 100 -> Plus
2L 10424734..10424930 929..1125 100 -> Plus
2L 10424992..10425482 1126..1616 100   Plus

LD41958.pep Sequence

Translation from 179 to 1405

> LD41958.pep
MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISV
SDDKTVRVWLKRDSGQYWPSICQYMPSGCTAIEYVSESRHLYVGQENGTV
TQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHC
TESGKRVGGYNFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLI
TTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKRGTIYELQGHS
NKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSR
PFFWNFRSMMDQKQLGIRQHHCRHCGKAVCDNCSTNRINIPIMGFEFDVR
TCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI
WDLSNIWA*

LD41958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15787-PA 408 GF15787-PA 1..408 1..408 2156 95.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10130-PA 408 GG10130-PA 1..408 1..408 2191 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13608-PA 408 GH13608-PA 1..408 1..408 2010 88.5 Plus
Dgri\GH14795-PA 404 GH14795-PA 71..301 42..280 150 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Wdfy2-PB 408 CG5168-PB 1..408 1..408 2205 100 Plus
Wdfy2-PA 408 CG5168-PA 1..408 1..408 2205 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20433-PA 408 GI20433-PA 1..408 1..408 2068 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18988-PA 408 GL18988-PA 1..408 1..408 2088 92.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18706-PA 408 GA18706-PA 1..408 1..408 2086 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18372-PA 408 GM18372-PA 1..408 1..408 2206 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23699-PA 408 GD23699-PA 1..408 1..408 2206 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13775-PA 408 GJ13775-PA 1..408 1..408 2071 91.2 Plus
Dvir\GJ13548-PA 405 GJ13548-PA 67..297 42..280 156 22.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15257-PA 409 GK15257-PA 1..409 1..408 2024 90 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18942-PA 408 GE18942-PA 1..408 1..408 2188 97.8 Plus

LD41958.hyp Sequence

Translation from 179 to 1405

> LD41958.hyp
MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISV
SDDKTVRVWLKRDSGQYWPSICQYMPSGCTAIEYVSESRHLYVGQENGTV
TQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHC
TESGKRVGGYNFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLI
TTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKRGTIYELQGHS
NKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSR
PFFWNFRSMMDQKQLGIRQHHCRHCGKAVCDNCSTNRINIPIMGFEFDVR
TCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI
WDLSNIWA*

LD41958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-PB 408 CG5168-PB 1..408 1..408 2205 100 Plus
CG5168-PA 408 CG5168-PA 1..408 1..408 2205 100 Plus