Clone LD41976 Report

Search the DGRC for LD41976

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:76
Vector:pOT2
Associated Gene/TranscriptAats-lys-RB
Protein status:LD41976.pep: gold
Sequenced Size:1996

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Aats-lys-RB 2011-10-19 Manual selection by Ken Wan

Clone Sequence Records

LD41976.complete Sequence

1996 bp assembled on 2012-04-30

GenBank Submission: BT133498.1

> LD41976.complete
TTGCATGTGTGCAGTTCTGCTGATGAAATACGCTGCTTAAAATAACCATG
TTCGCCCGCTGCGCCCTTAGAACCGTGCAGGGGTCATGGCCCCGATGCAG
ATACACCGGAATTCAGCCACTTGCCGCCGGTTTCCACGTGAGCGCTCCGC
AAATGGAGCCAAGCAAGCAGACCAAACTTGAGCTAAAGCGTCGCCTGAAG
GCCGAGCAAAAGGCCAAGGAGAAGGCTGAGAAGGCGGCCGCTGCGCCGGC
GGAAAATACTGCTGGCAAGAAGAAGAGCAGTGCCGCCGAGGAGGAGGAGA
TCTCGCCGAATGAATACTTTAAGCTGCGCTCCGCCGCCGTTCAGGAGCTG
AAACGTTCACCCGCAACGGATCCCTATCCACACAAGTTCCATGTGAGTAG
CTCGCTGGAAGACTTCATTGCCAAGTACGAGAACAGCCTCAAGGAGGGCG
AGACCCTGGAGAATGTCAAACTGAGCGTGGCTGGGCGCGTGCATGCCATA
CGCGAGTCGGGCGCCAAGCTCATTTTCTACGATCTGCGCGGCGAGGGCGT
CAAGGTGCAGGTGATGGCCAGCGCTAAGTCCTACAAGTCGGAGGCGGATT
TCGAAATCGATACGTCCAAATTGCGACGTGGTGATATCATCGGCGTTGTC
GGACATCCCGGCAAAACCAAGAAGGGTGAACTGTCCGTTATGCCCAGCGA
GATCAAGCTGCTATCGCCCTGTCTACACATGCTGCCCCATCTGCATTTCG
GGTTGAAGGACAAGGAGACGCGCTACCGCCAGCGCTATCTTGATCTCATT
CTCAACAACAATGTGCGAGAGAAATTCCAGATCCGTGCCAAGATCATCTC
GTACGTGCGTCAGTTCCTGGATCGTCTGGGTTTCCTGGAGATCGAGACGC
CCATGATGAACATGATCGCCGGTGGAGCCACTGCCAAGCCCTTCGTGACG
CATCACAATGACCTCAAGATGGATCTGTTCATGCGCATTGCTCCGGAGCT
GTATCACAAGATGCTGGTGGTGGGTGGACTCGATCGTGTGTACGAGATCG
GACGGCAGTTCCGCAACGAGGGCATCGACCTCACCCACAATCCTGAATTC
ACCACGTGCGAGTTCTACATGGCGTATGCCGACTACGCTGACATTATGGA
TATCACCGAGCAGTTGGTCTCGGGAATGGTGAAAGCGATCCGTGGCTCCT
ACAAGGTCATCTATCATCCGGAGGGTCCAGAGGGACCTGAGCAAGAACTT
GACTTTACGCCGCCCTTTAAGCGCGTATCCATGATCAAAACGCTGGAAGA
GAAGCTGCAGGTGAAGTTCCCCGCGGCCGACACCTTCAATTCGCCAGAGA
CGAATCAGTTCCTGTCTCAGCTGTGCGCTAAGCACCAGGTCGAGTGCCCA
GCTCCGCGCACCACTGCCCGCCTGCTGGACAAGCTCGTCGGCGAATTCAT
CGAGGAGTTTTGCGTGAATCCAACGTTCATCTGTGAGCATCCGCAGATCA
TGTCGCCGCTGGCCAAGTACCATCGCAGTATTCCCGGCCTGACGGAGCGC
TTCGAACTGTTTGTGGCCAAGAAGGAGATTTGCAACGCGTATACCGAGTT
GAACGATCCGGTTGTGCAGCGCGAGCGTTTCGAGCAGCAGGCCAGCGACA
AGGCGGCCGGCGATGATGAGGCCCAGCTGGTCGACGAGAACTTCTGCACG
TCCCTGGAGTACGGACTGCCGCCCACCGGTGGTTTTGGCATGGGCATCGA
TCGCCTGGCCATGTTCCTCACGGACTCCAACAACATCAAGGAGGTTCTGC
TGTTCCCCGCCATGAAACCGGAGGATGCCAACCGCACGGCAGCGGAAACT
GCTCCCACCGCACAGCAGTAGATGGCCAACGCCGCTCACTCCACTCAGAC
CCAATCCTTGTACGTTACGCTGGTCCCGGACTAATCCCAGTTGCTAAGTT
ATTCAACCAATAAACATTTTTCCCAATAAAAAAAAAAAAAAAAAAA

LD41976.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9498327..9499284 1798..841 4760 99.8 Minus
chrX 22417052 chrX 9499344..9500007 842..179 3320 100 Minus
chrX 22417052 chrX 9498082..9498270 1977..1789 945 100 Minus
chrX 22417052 chrX 9500137..9500314 178..1 890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9606612..9607569 1798..841 4760 99.8 Minus
X 23542271 X 9607629..9608292 842..179 3320 100 Minus
X 23542271 X 9606365..9606555 1979..1789 955 100 Minus
X 23542271 X 9608422..9608599 178..1 890 100 Minus
Blast to na_te.dros performed 2019-03-15 13:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 7727..7764 1571..1608 118 78.9 Plus

LD41976.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:58:00 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9498082..9498268 1791..1977 100 <- Minus
chrX 9498335..9499282 843..1790 100 <- Minus
chrX 9499344..9500007 179..842 100 <- Minus
chrX 9500137..9500314 1..178 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-30 15:43:35 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RC 1..1824 48..1871 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:18:11 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RB 1..1824 48..1871 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:46:06 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RB 1..1824 48..1871 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 15:43:34 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RC 223..2199 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:18:11 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RB 243..2219 1..1977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:46:06 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RB 243..2219 1..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:00 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606367..9606553 1791..1977 100 <- Minus
X 9606620..9607567 843..1790 100 <- Minus
X 9607629..9608292 179..842 100 <- Minus
X 9608422..9608599 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:00 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606367..9606553 1791..1977 100 <- Minus
X 9606620..9607567 843..1790 100 <- Minus
X 9607629..9608292 179..842 100 <- Minus
X 9608422..9608599 1..178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:00 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606367..9606553 1791..1977 100 <- Minus
X 9606620..9607567 843..1790 100 <- Minus
X 9607629..9608292 179..842 100 <- Minus
X 9608422..9608599 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:18:11 Download gff for LD41976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9500400..9500586 1791..1977 100 <- Minus
arm_X 9502455..9502632 1..178 100   Minus
arm_X 9500653..9501600 843..1790 100 <- Minus
arm_X 9501662..9502325 179..842 100 <- Minus

LD41976.hyp Sequence

Translation from 47 to 1870

> LD41976.hyp
MFARCALRTVQGSWPRCRYTGIQPLAAGFHVSAPQMEPSKQTKLELKRRL
KAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEEEISPNEYFKLRSAAVQE
LKRSPATDPYPHKFHVSSSLEDFIAKYENSLKEGETLENVKLSVAGRVHA
IRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTSKLRRGDIIGV
VGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDL
ILNNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFV
THHNDLKMDLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPE
FTTCEFYMAYADYADIMDITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQE
LDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSPETNQFLSQLCAKHQVEC
PAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQIMSPLAKYHRSIPGLTE
RFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFC
TSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFPAMKPEDANRTAAE
TAPTAQQ*

LD41976.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-lys-PC 607 CG12141-PC 1..607 1..607 3150 100 Plus
Aats-lys-PB 607 CG12141-PB 1..607 1..607 3150 100 Plus
Aats-lys-PA 574 CG12141-PA 9..574 42..607 2915 99.6 Plus
CG31739-PC 1082 CG31739-PC 340..654 55..372 195 24.5 Plus
CG31739-PB 1082 CG31739-PB 340..654 55..372 195 24.5 Plus

LD41976.pep Sequence

Translation from 47 to 1870

> LD41976.pep
MFARCALRTVQGSWPRCRYTGIQPLAAGFHVSAPQMEPSKQTKLELKRRL
KAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEEEISPNEYFKLRSAAVQE
LKRSPATDPYPHKFHVSSSLEDFIAKYENSLKEGETLENVKLSVAGRVHA
IRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTSKLRRGDIIGV
VGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDL
ILNNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFV
THHNDLKMDLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPE
FTTCEFYMAYADYADIMDITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQE
LDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSPETNQFLSQLCAKHQVEC
PAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQIMSPLAKYHRSIPGLTE
RFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFC
TSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFPAMKPEDANRTAAE
TAPTAQQ*

LD41976.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22422-PA 580 GF22422-PA 57..580 85..607 2666 93.3 Plus
Dana\GF15370-PA 1132 GF15370-PA 501..722 160..374 201 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18967-PA 574 GG18967-PA 9..574 42..607 2958 97.3 Plus
Dere\GG22777-PA 1145 GG22777-PA 546..715 206..374 190 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17710-PA 582 GH17710-PA 9..580 42..607 2663 85.7 Plus
Dgri\GH21379-PA 533 GH21379-PA 207..525 238..587 199 23.3 Plus
Dgri\GH13102-PA 1125 GH13102-PA 498..667 206..374 182 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
LysRS-PC 607 CG12141-PC 1..607 1..607 3150 100 Plus
LysRS-PB 607 CG12141-PB 1..607 1..607 3150 100 Plus
LysRS-PA 574 CG12141-PA 9..574 42..607 2915 99.6 Plus
AspRS-m-PC 1082 CG31739-PC 340..654 55..372 195 24.5 Plus
AspRS-m-PB 1082 CG31739-PB 340..654 55..372 195 24.5 Plus
AspRS-m-PA 1082 CG31739-PA 340..654 55..372 195 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15452-PA 554 GI15452-PA 9..550 42..581 2461 86.7 Plus
Dmoj\GI14195-PA 1190 GI14195-PA 561..756 206..418 184 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27002-PA 518 GL27002-PA 170..500 266..596 1720 92.4 Plus
Dper\GL27002-PA 518 GL27002-PA 9..173 42..203 554 70.5 Plus
Dper\GL18794-PA 1091 GL18794-PA 436..683 160..418 183 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11433-PA 584 GA11433-PA 9..566 42..596 2610 86.9 Plus
Dpse\GA16436-PA 1106 GA16436-PA 451..698 160..418 183 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11355-PA 574 GM11355-PA 9..574 42..607 2975 98.1 Plus
Dsec\GM17213-PA 1088 GM17213-PA 493..714 160..374 200 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16054-PA 610 GD16054-PA 11..610 8..607 3164 97.8 Plus
Dsim\GD24088-PA 887 GD24088-PA 493..714 160..374 198 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19167-PA 580 GJ19167-PA 9..576 42..607 2588 86 Plus
Dvir\GJ17510-PA 1132 GJ17510-PA 443..689 158..418 185 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25859-PA 578 GK25859-PA 9..567 42..599 2616 89.6 Plus
Dwil\GK18240-PA 1078 GK18240-PA 493..688 206..418 192 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15441-PA 580 GE15441-PA 9..573 42..605 2941 97.2 Plus
Dyak\GE12772-PA 1141 GE12772-PA 542..711 206..374 189 27.9 Plus