Clone LD41978 Report

Search the DGRC for LD41978

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:419
Well:78
Vector:pOT2
Associated Gene/TranscriptCG11964-RA
Protein status:LD41978.pep: gold
Preliminary Size:1919
Sequenced Size:1872

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11964 2001-01-01 Release 2 assignment
CG11964 2001-07-04 Blastp of sequenced clone
CG11964 2003-01-01 Sim4 clustering to Release 3
CG11964 2008-04-29 Release 5.5 accounting
CG11964 2008-08-15 Release 5.9 accounting
CG11964 2008-12-18 5.12 accounting

Clone Sequence Records

LD41978.complete Sequence

1872 bp (1872 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051943

> LD41978.complete
AATGGACATCGGCGAACTGCTGGCGTTTAAGCCGGAACAGACGCCAAAGC
GTCCGCACGACGACGAGGACGATGAATTCGATTTGGCGAGCTCGCACGGA
AAACGGGGCGGTGTCGATGAGAAAACCAAACGCATGCGGCGCATCGCCGA
TGCCAAGGAGTCCGCACACTATGTCAAGCAAAGTGGAGGAGCCACCGGTG
GCAGTGGCACTTCCGCCTTTGAATTCGATCCGGAACTGACAGAGGAGGAA
CGCCTGAACATCCTGAAGTACGTGGAGAACGAGGAGGCCGATGGCGATGT
TCTGGATGAGCAGAGCCTGAAGAAACTGATACTGGTGTTCGAGAAGCGTA
ACTTGAAGAACCAGGAGATGCGCATCAAGTTTGCCGACAGTCCCGAGAAG
TTCATGGACTCCGAGGTGGAGCTGCACACGGTAATCCAGGAGCTGAAGGG
CGTGGCCACGGTGCCCGATCTGTATCCAATTCTCGTGGATCTGCACGGCC
TGCACAGTTTGCTCGAACTGCTGGCACATCAGAACACAGACATAGCCGTG
GCCGTGGTAGATCTGCTGCAAGAAGTGACCGATGTTGATATCCTGGGCGA
AAGTCAAGAGGGTGCCGAATCCTTGATTGAAGCACTGAGAAAAGAGCAAA
TCTGTGCTCTGCTTGTCCAGAATCTGGAGCGACTGAACGAACAGGTTAAG
GAGGAAGCCGATGGCGTGCATAATACGCTGGCCATAGTGGAAAATCTTAC
CGAAATCGATTCGGAATTCGTGAAGGAAGCCGCTGAACAGGGACTGCTCG
CCTGGCTGCTGAAACGGCTGCGCGGCAAGTCGCCCTTCGATCCCAACAAA
CTCTACTGCAGCGAGATACTTTCCATACTTATACAAACGGAGAACGAGAA
CCGATTACTGCTGGGTTCTCTGGATGGCGTGGATGTGCTGCTCCAGCAGC
TGGCTGTCTACAAGAGACACGATCCCGCTAGCAACGAGGAGCAGGAGTAC
ATGCAGAACCTCTTCAATTGCCTTTGTTCCGCTCTGATGGCCCGCGAGAA
TCGCGATCGTTTTCTCAGCGGCGAGGGTCTGCAGCTGATGAACCTAATGC
TGCGCGAGAAGAAGATGTCTAGAAATGGATCGCTCAAGGTGTTGGATCAT
GCCATGGCTGGCCAGGATGGCAGAGACAACTGCAACAAGTTTGTCGAAAT
TCTCGGCTTGCGCACCATCTTCCCACTCTTTATGAAAACCCCCAAGCGCA
ACAAGCAGCGCCTAATCTCCGCCGATGAGCATGAGGAGCATGTGACCTCC
GTAATCGCATCAATGTTGCGAAACTGCAAGGGCACACACCGCCAGCGAAT
GTTGGCCAAGTTCACGGAGAATGATCACGAGAAGGTGGATCGCCTGCTGG
AGCTGCACCTCAAGTATCTGGCCAAGGTGGAAGCCATAGACAAGGAGATC
GATCAGCAGGCTAAGGATCCCACCATTGATGAGGACGAGGAGGCGGAGAA
TAACTATATAAAACGACTGACCGGCGGGCTGTTCACGCTGCAGCGCATCG
ACTACATCCTGCTGGAGGTCAGTGCCACTGGCGACACCGTCAAGCAGCGT
GTACTGCAGATCCTTAACTTGCGCGGCGCTTCCATGAAGACCATTCGCAG
CATAATGAGGGAATACGCTGGCAACCTGGGCGATGGCGACACCGACTGGC
GGGAACAGGAGCAGAACCACATATTATCTCTAGTCGATCGTTTCTAAGGC
TCAACACACAATAAACAAAACATAAATATTATGAAAATCTTTAAAAATGT
GGCGGGTCAGAAGTTTACATCTGAAATTTGAGATTAAAATTTTGAACAAT
GAAAAAAAAAAAAAAAAAAAAA

LD41978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-RA 2188 CG11964-RA 62..1915 1..1854 9270 100 Plus
skap-RA 1777 skap-RA 1701..1777 1854..1778 385 100 Minus
skap-RB 1780 skap-RB 1704..1780 1854..1778 385 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4769397..4770833 1466..30 7125 99.7 Minus
chr3R 27901430 chr3R 4769138..4769335 1661..1464 990 100 Minus
chr3R 27901430 chr3R 4768887..4769077 1851..1661 940 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8943464..8944900 1466..30 7185 100 Minus
3R 32079331 3R 8943205..8943402 1661..1464 990 100 Minus
3R 32079331 3R 8942951..8943144 1854..1661 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8684295..8685731 1466..30 7185 100 Minus
3R 31820162 3R 8684036..8684233 1661..1464 990 100 Minus
3R 31820162 3R 8683782..8683975 1854..1661 970 100 Minus
3R 31820162 3R 8685787..8685817 31..1 155 100 Minus
Blast to na_te.dros performed 2019-03-16 20:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1508..1568 1737..1797 116 65.6 Plus

LD41978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:42:12 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4768887..4769076 1662..1851 99 <- Minus
chr3R 4769138..4769333 1466..1661 100 <- Minus
chr3R 4769398..4770831 32..1465 99 <- Minus
chr3R 4770889..4770919 1..31 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:34 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 1..1746 2..1747 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:27 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 1..1746 2..1747 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:18 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 1..1746 2..1747 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:55 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 1..1746 2..1747 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:48 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 1..1746 2..1747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:41 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 19..1869 1..1851 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:27 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 30..1880 1..1851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:18 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 35..1885 1..1851 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:55 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 19..1869 1..1851 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:48 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
CG11964-RA 35..1885 1..1851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:12 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8942954..8943143 1662..1851 100 <- Minus
3R 8943205..8943400 1466..1661 100 <- Minus
3R 8943465..8944898 32..1465 100 <- Minus
3R 8944956..8944986 1..31 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:12 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8942954..8943143 1662..1851 100 <- Minus
3R 8943205..8943400 1466..1661 100 <- Minus
3R 8943465..8944898 32..1465 100 <- Minus
3R 8944956..8944986 1..31 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:42:12 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8942954..8943143 1662..1851 100 <- Minus
3R 8943205..8943400 1466..1661 100 <- Minus
3R 8943465..8944898 32..1465 100 <- Minus
3R 8944956..8944986 1..31 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:18 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4768676..4768865 1662..1851 100 <- Minus
arm_3R 4768927..4769122 1466..1661 100 <- Minus
arm_3R 4769187..4770620 32..1465 100 <- Minus
arm_3R 4770678..4770708 1..31 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:55 Download gff for LD41978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8683785..8683974 1662..1851 100 <- Minus
3R 8684036..8684231 1466..1661 100 <- Minus
3R 8684296..8685729 32..1465 100 <- Minus
3R 8685787..8685817 1..31 100   Minus

LD41978.hyp Sequence

Translation from 0 to 1746

> LD41978.hyp
MDIGELLAFKPEQTPKRPHDDEDDEFDLASSHGKRGGVDEKTKRMRRIAD
AKESAHYVKQSGGATGGSGTSAFEFDPELTEEERLNILKYVENEEADGDV
LDEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVELHTVIQELKG
VATVPDLYPILVDLHGLHSLLELLAHQNTDIAVAVVDLLQEVTDVDILGE
SQEGAESLIEALRKEQICALLVQNLERLNEQVKEEADGVHNTLAIVENLT
EIDSEFVKEAAEQGLLAWLLKRLRGKSPFDPNKLYCSEILSILIQTENEN
RLLLGSLDGVDVLLQQLAVYKRHDPASNEEQEYMQNLFNCLCSALMAREN
RDRFLSGEGLQLMNLMLREKKMSRNGSLKVLDHAMAGQDGRDNCNKFVEI
LGLRTIFPLFMKTPKRNKQRLISADEHEEHVTSVIASMLRNCKGTHRQRM
LAKFTENDHEKVDRLLELHLKYLAKVEAIDKEIDQQAKDPTIDEDEEAEN
NYIKRLTGGLFTLQRIDYILLEVSATGDTVKQRVLQILNLRGASMKTIRS
IMREYAGNLGDGDTDWREQEQNHILSLVDRF*

LD41978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-PA 581 CG11964-PA 1..581 1..581 2949 100 Plus

LD41978.pep Sequence

Translation from 1 to 1746

> LD41978.pep
MDIGELLAFKPEQTPKRPHDDEDDEFDLASSHGKRGGVDEKTKRMRRIAD
AKESAHYVKQSGGATGGSGTSAFEFDPELTEEERLNILKYVENEEADGDV
LDEQSLKKLILVFEKRNLKNQEMRIKFADSPEKFMDSEVELHTVIQELKG
VATVPDLYPILVDLHGLHSLLELLAHQNTDIAVAVVDLLQEVTDVDILGE
SQEGAESLIEALRKEQICALLVQNLERLNEQVKEEADGVHNTLAIVENLT
EIDSEFVKEAAEQGLLAWLLKRLRGKSPFDPNKLYCSEILSILIQTENEN
RLLLGSLDGVDVLLQQLAVYKRHDPASNEEQEYMQNLFNCLCSALMAREN
RDRFLSGEGLQLMNLMLREKKMSRNGSLKVLDHAMAGQDGRDNCNKFVEI
LGLRTIFPLFMKTPKRNKQRLISADEHEEHVTSVIASMLRNCKGTHRQRM
LAKFTENDHEKVDRLLELHLKYLAKVEAIDKEIDQQAKDPTIDEDEEAEN
NYIKRLTGGLFTLQRIDYILLEVSATGDTVKQRVLQILNLRGASMKTIRS
IMREYAGNLGDGDTDWREQEQNHILSLVDRF*

LD41978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17276-PA 582 GF17276-PA 1..582 1..581 2711 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17409-PA 581 GG17409-PA 1..581 1..581 2989 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22182-PA 589 GH22182-PA 1..589 1..581 2694 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11964-PA 581 CG11964-PA 1..581 1..581 2949 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22703-PA 586 GI22703-PA 1..586 1..581 2713 88.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22278-PA 581 GL22278-PA 1..581 1..581 2725 88.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11299-PA 581 GA11299-PA 1..581 1..581 2716 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26298-PA 581 GM26298-PA 1..581 1..581 3040 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20833-PA 581 GD20833-PA 1..581 1..581 3045 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23432-PA 588 GJ23432-PA 1..588 1..581 2691 88.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11115-PA 582 GK11115-PA 1..582 1..581 2719 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24812-PA 581 GE24812-PA 1..581 1..581 3007 97.9 Plus