Clone LD42024 Report

Search the DGRC for LD42024

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:24
Vector:pOT2
Associated Gene/TranscriptCG17600-RA
Protein status:LD42024.pep: gold
Preliminary Size:2348
Sequenced Size:2302

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17600 2001-01-01 Release 2 assignment
CG17602 2001-01-01 Release 2 assignment
CG17596 2001-01-01 Release 2 assignment
CG17600 2001-09-19 Blastp of sequenced clone
CG17600 2008-04-29 Release 5.5 accounting
CG17600 2008-08-15 Release 5.9 accounting
CG17600 2008-12-18 5.12 accounting

Clone Sequence Records

LD42024.complete Sequence

2302 bp (2302 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058699

> LD42024.complete
TGAAATGGAATTTGTTGAATTTTAATTGCACGCAGCACGCTGCCGGCGAA
AACAACAGCAAAATTAGCGGGCTGATTTCATTCAACCTGAGATAAAGCAA
CAATAATAGCGCACAACACATCGCAAAGGCGCAGCAGGAGAAAATAGCTG
ATAAATAGACAATAATAAATAAATATTACACACAAAGGCCAGGGACGCCG
CTTTAATTAGACTTGTCAATGAATCAGTGACATCACCGATCATCATAACC
CAATCATCTCAGCCAATCAGCAGAAATGACAGAGACCAGTAATCAGCAGC
CTGGCGGCGAAGATTTCAATGGCCGCCACTCGGCATCGCCGGCCCGCACC
ATTGATTCGCATGATTCCACCACCGGCAGCATGGATACCATTGTGGATCG
CAGCCTGAATCCTGAGGAACTCCATCAGGTGGTGACCACCATCGAACATA
GCACGAATACCACGAACTTGGCGGGATCGGGCGGTAGTCTGACCAACTCG
CAAATCGGCATGCTTCAACGGGATGAGAATCGAAAACAGCAGGAGGACCA
GGAGCAGGCGCGCCAGGATGCCCAAAGTCACATCTATTCGAGTCCTGTCT
ACGATGAGAAGCCGCCGGCGGTGAAACTCCTATCCGCCGCCCTAGACTTG
GATGCCCAAAAATCCCAGGCAAACAATGATGACGATAATAAGCCCAATCT
TATTTCGCACCAAGAGTTCAAACAACAGCTGCAGGAAGCTATTGCTTCGC
GGCAACCAAACCAGGTGAATGGCACTAAGAGTGGGGCCACCACTTTGGAC
TCCAGGATCAGTCGTAAACAGCGCTGTCCACCGGAATTTATTAAGTACAA
GGAGGGCAGCGAGGGTGGAGGCAGTGGCTCATCGCTTTCCTCGAAAGATC
GGCGCAAGCGCAAGGCGAGCAATGAATGCTGCTCGGCATTTCCACTGCAA
ATAGTGTTGGGCACTCTCCAGTTGCTCCTGGCCATATCGCTGGTGGCCCT
GGGATCACTTCTGATCGTCCGAGAGGCAGCGCTCTCACTGGCGGGATGCG
GCATCTGGACGGGATTGATAGCAGCCGTTACGGGCTCCCTTGGAGTGGTG
AGCATGCGCAAAACCCAGACAGCGTTTTTGGCCCTCAGTTTGGTCTGCAT
CGCCAGCAGCACCCTGGCTCTGGCTATTTCCGGCGTGGGATTGTCAAGGG
ACCTCAACAGGATGGCGGAGCAAAAGGGTGAACAGTTCGACTTGATCGAT
ACCAACAGCGAGGTTTCCGCTGCCTGCGGCCTAATTTTTGCCCTGTTTCT
TCATTTTGTGGTCAGTATTGTATCCGTCTATCGTTGCGCCCTTCAGATTT
GCACTAAGTCGGAACATAGTGAGCTTCGCGACGTGATTATCAAGTCGAAT
GCTTCGGGAATCGCTCTGGACCAACAGAAGGTGGACCAGTACATCAAGGC
GATGTCTCTGAATGGCAGTGAAAAGGTGAACACCGAGAAGCTAGCGGCTA
TGTGGATGTATGCCACCCAGATGGGAAGCCTGCCGCCAACAGTCCGCAAA
CTGACGCCTCCATCGCGGCAGATCATGCTCATTCCCTCCACCGCTGGCAA
TGGGATGGCACCACCACCGCCCACACGCTTGCCACCTCCGCCTCCGGGCG
CCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTGCCGGCGCAGTACCGT
GGAATGACCCTTCCCTACATGCGACCTGGGCCCGGATCCGTGACCTACGC
CCACCCGGCTAGCCTAAGCGGGACATACCGGACTCACAAGAGCACAAAGT
CAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGGGCGGGAAAGTCTGAT
GCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGATGTCCTGGACGGTGC
TCCCAATTTCCAGTATACGGGTCTAGATCGAGCCATAGCTGATAGCTTTT
TGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCACGTCGACTATTCGTCG
TCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGCATCCTTCAAAACGAA
GATCGTTTGCCGGGATGTGGTGATGTGACGGGAAAAGCATCCGCTCTCTA
GTTCCCAGTTTCCCAGACTTTTGTATATATTTTTTTTACGGAGCCACAAC
GAAATCCCATCTATGTGGGGCTTTGTCTGATAAATTACCCCTTTTATATC
CATTACTCTATCAATGTACTTACATATGCGTATAGCTCTTAAGACACATT
AAAATTAATCGAATAAAGATATATTAAGCAAACTAAAAAAAAAAAAAAAA
AA

LD42024.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RA 2562 CG17600-RA 188..2472 1..2285 11425 100 Plus
CG17600.b 1046 CG17600.b 71..998 1358..2285 4640 100 Plus
CG17600.c 1127 CG17600.c 316..1127 1473..2284 4060 100 Plus
CG17600.c 1127 CG17600.c 1..311 1167..1477 1555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21937310..21937990 1604..2284 3405 100 Plus
chrX 22417052 chrX 21923995..21924549 212..766 2775 100 Plus
chrX 22417052 chrX 21924705..21925178 762..1235 2370 100 Plus
chrX 22417052 chrX 21911349..21911559 1..211 1055 100 Plus
chrX 22417052 chrX 21936904..21937034 1474..1604 655 100 Plus
chrX 22417052 chrX 21925234..21925359 1234..1359 630 100 Plus
chrX 22417052 chrX 21936726..21936845 1358..1477 600 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22542025 1604..2285 3410 100 Plus
X 23542271 X 22528029..22528583 212..766 2775 100 Plus
X 23542271 X 22528739..22529212 762..1235 2370 100 Plus
X 23542271 X 22515383..22515593 1..211 1055 100 Plus
X 23542271 X 22540938..22541068 1474..1604 655 100 Plus
X 23542271 X 22529268..22529393 1234..1359 630 100 Plus
X 23542271 X 22540760..22540879 1358..1477 600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22526436..22527117 1604..2285 3410 100 Plus
X 23527363 X 22513121..22513675 212..766 2775 100 Plus
X 23527363 X 22513831..22514304 762..1235 2370 100 Plus
X 23527363 X 22500475..22500685 1..211 1055 100 Plus
X 23527363 X 22526030..22526160 1474..1604 655 100 Plus
X 23527363 X 22514360..22514485 1234..1359 630 100 Plus
X 23527363 X 22525852..22525971 1358..1477 600 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:49:34 has no hits.

LD42024.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:33 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21911349..21911559 1..211 100 -> Plus
chrX 21923995..21924547 212..764 100 -> Plus
chrX 21924708..21925178 765..1235 100 -> Plus
chrX 21925236..21925357 1236..1357 100 -> Plus
chrX 21936726..21936843 1358..1475 100 -> Plus
chrX 21936906..21937034 1476..1604 100 -> Plus
chrX 21937311..21937990 1605..2284 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:01:46 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1..1803 276..2078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:23 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1..1803 276..2078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:13:07 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1..1803 276..2078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:29:47 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1..1803 276..2078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:36 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1..1803 276..2078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:46 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 185..2468 1..2284 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:23 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 185..2468 1..2284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:07 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 187..2470 1..2284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:29:47 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 185..2468 1..2284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:36 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 187..2470 1..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:33 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
X 22515383..22515593 1..211 100 -> Plus
X 22528029..22528581 212..764 100 -> Plus
X 22528742..22529212 765..1235 100 -> Plus
X 22529270..22529391 1236..1357 100 -> Plus
X 22540760..22540877 1358..1475 100 -> Plus
X 22540940..22541068 1476..1604 100 -> Plus
X 22541345..22542024 1605..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:33 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
X 22515383..22515593 1..211 100 -> Plus
X 22528029..22528581 212..764 100 -> Plus
X 22528742..22529212 765..1235 100 -> Plus
X 22529270..22529391 1236..1357 100 -> Plus
X 22540760..22540877 1358..1475 100 -> Plus
X 22540940..22541068 1476..1604 100 -> Plus
X 22541345..22542024 1605..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:33 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
X 22515383..22515593 1..211 100 -> Plus
X 22528029..22528581 212..764 100 -> Plus
X 22528742..22529212 765..1235 100 -> Plus
X 22529270..22529391 1236..1357 100 -> Plus
X 22540760..22540877 1358..1475 100 -> Plus
X 22540940..22541068 1476..1604 100 -> Plus
X 22541345..22542024 1605..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:07 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21917219..21917429 1..211 100 -> Plus
arm_X 21929865..21930417 212..764 100 -> Plus
arm_X 21930578..21931048 765..1235 100 -> Plus
arm_X 21931106..21931227 1236..1357 100 -> Plus
arm_X 21942596..21942713 1358..1475 100 -> Plus
arm_X 21942776..21942904 1476..1604 100 -> Plus
arm_X 21943181..21943860 1605..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:07 Download gff for LD42024.complete
Subject Subject Range Query Range Percent Splice Strand
X 22500475..22500685 1..211 100 -> Plus
X 22513121..22513673 212..764 100 -> Plus
X 22513834..22514304 765..1235 100 -> Plus
X 22514362..22514483 1236..1357 100 -> Plus
X 22525852..22525969 1358..1475 100 -> Plus
X 22526032..22526160 1476..1604 100 -> Plus
X 22526437..22527116 1605..2284 100   Plus

LD42024.pep Sequence

Translation from 275 to 2077

> LD42024.pep
MTETSNQQPGGEDFNGRHSASPARTIDSHDSTTGSMDTIVDRSLNPEELH
QVVTTIEHSTNTTNLAGSGGSLTNSQIGMLQRDENRKQQEDQEQARQDAQ
SHIYSSPVYDEKPPAVKLLSAALDLDAQKSQANNDDDNKPNLISHQEFKQ
QLQEAIASRQPNQVNGTKSGATTLDSRISRKQRCPPEFIKYKEGSEGGGS
GSSLSSKDRRKRKASNECCSAFPLQIVLGTLQLLLAISLVALGSLLIVRE
AALSLAGCGIWTGLIAAVTGSLGVVSMRKTQTAFLALSLVCIASSTLALA
ISGVGLSRDLNRMAEQKGEQFDLIDTNSEVSAACGLIFALFLHFVVSIVS
VYRCALQICTKSEHSELRDVIIKSNASGIALDQQKVDQYIKAMSLNGSEK
VNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGNGMAPPPPT
RLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYAHPASLSGT
YRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGAPNFQYTGL
DRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTKIVCRDVVM
*

LD42024.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21005-PA 257 GF21005-PA 14..257 362..600 964 91 Plus
Dana\GF18979-PA 77 GF18979-PA 1..44 277..320 222 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19749-PA 361 GG19749-PA 1..361 1..361 1677 92.3 Plus
Dere\GG19751-PA 261 GG19751-PA 1..261 338..600 1112 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24077-PA 784 GH24077-PA 17..363 16..362 1177 72.9 Plus
Dgri\GH24078-PA 221 GH24078-PA 1..221 393..600 598 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 600 CG17600-PA 1..600 1..600 3044 100 Plus
CG17600-PD 603 CG17600-PD 1..603 1..600 3030 99.5 Plus
CG17600-PC 208 CG17600-PC 1..208 393..600 1083 100 Plus
CG17600-PB 208 CG17600-PB 1..208 393..600 1083 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14475-PA 1196 GI14475-PA 1..365 1..362 1196 68.2 Plus
Dmoj\GI14476-PA 256 GI14476-PA 27..256 361..600 597 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13300-PA 391 GL13300-PA 1..391 1..361 1051 63.7 Plus
Dper\GL13303-PA 244 GL13303-PA 1..244 358..600 1024 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14574-PA 402 GA14574-PA 1..402 1..361 1314 72.7 Plus
Dpse\GA22829-PA 248 GA22829-PA 9..248 362..600 1017 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11734-PA 361 GM11734-PA 1..361 1..361 1736 95.3 Plus
Dsec\GM11737-PA 238 GM11737-PA 4..238 362..600 1023 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17549-PA 361 GD17549-PA 1..361 1..361 1729 95 Plus
Dsim\GD17551-PA 261 GD17551-PA 7..245 358..600 982 93 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18812-PA 1257 GJ18812-PA 1..378 1..362 1305 74 Plus
Dvir\GJ18813-PA 250 GJ18813-PA 7..250 362..600 940 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25773-PA 347 GK25773-PA 17..347 13..361 1076 69.5 Plus
Dwil\GK25775-PA 221 GK25775-PA 1..221 393..600 671 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17942-PA 361 GE17942-PA 1..361 1..361 1684 92 Plus
Dyak\GE17945-PA 240 GE17945-PA 4..240 362..600 1041 92.5 Plus

LD42024.hyp Sequence

Translation from 275 to 2077

> LD42024.hyp
MTETSNQQPGGEDFNGRHSASPARTIDSHDSTTGSMDTIVDRSLNPEELH
QVVTTIEHSTNTTNLAGSGGSLTNSQIGMLQRDENRKQQEDQEQARQDAQ
SHIYSSPVYDEKPPAVKLLSAALDLDAQKSQANNDDDNKPNLISHQEFKQ
QLQEAIASRQPNQVNGTKSGATTLDSRISRKQRCPPEFIKYKEGSEGGGS
GSSLSSKDRRKRKASNECCSAFPLQIVLGTLQLLLAISLVALGSLLIVRE
AALSLAGCGIWTGLIAAVTGSLGVVSMRKTQTAFLALSLVCIASSTLALA
ISGVGLSRDLNRMAEQKGEQFDLIDTNSEVSAACGLIFALFLHFVVSIVS
VYRCALQICTKSEHSELRDVIIKSNASGIALDQQKVDQYIKAMSLNGSEK
VNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGNGMAPPPPT
RLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYAHPASLSGT
YRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGAPNFQYTGL
DRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTKIVCRDVVM
*

LD42024.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 600 CG17600-PA 1..600 1..600 3044 100 Plus
CG17600-PD 603 CG17600-PD 1..603 1..600 3030 99.5 Plus
CG17600-PC 208 CG17600-PC 1..208 393..600 1083 100 Plus
CG17600-PB 208 CG17600-PB 1..208 393..600 1083 100 Plus