Clone LD42035 Report

Search the DGRC for LD42035

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:35
Vector:pOT2
Associated Gene/TranscriptCG5126-RA
Protein status:LD42035.pep: gold
Preliminary Size:1697
Sequenced Size:1663

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5126 2001-01-01 Release 2 assignment
CG5126 2001-07-04 Blastp of sequenced clone
CG5126 2003-01-01 Sim4 clustering to Release 3
CG5126 2008-04-29 Release 5.5 accounting
CG5126 2008-08-15 Release 5.9 accounting
CG5126 2008-12-18 5.12 accounting

Clone Sequence Records

LD42035.complete Sequence

1663 bp (1663 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051944

> LD42035.complete
AAATATACACCTACTTGCGTATATTGTCAGTTAAGATTACCCATTCAGAT
AGCAATTGATTCCTGCGTGGAGGTCACGATGTCGACGCAACAGCAGCAGT
TAGACTATATAGAGCGCCACCTGGTGTACGACATCTTCAAGAACTTTGGT
CCGAGTGCTTCGCTGGAATCGCACAGCGTTGAGTGCTCCAATGGACTGGA
CGGCTTCATGTCCGCCTTGTACACCGTTACGCTGGACGTGGTCATCGCCG
AGCGCAAGCGGACGGAGGTCGTCCTGGTCAAATTCATGAAGGGAACGGAA
GAGTTCCGGGAGAGCAGCAACTCGTACATCCAGTTTTCCAACGAGATCTT
CGCCTACGCCGAGATCCTGCCCGCCTATGAGAATGTGCTTCGGACGAGTC
ACCTGGAAAGCGAAGTGGTAAAGAACTGGGTTCCCTGTTGCTACTTCGCC
AGGTTTGGCCACGTTGAAGGTTTAGGGAATGGTAGGGAATCGGTGCTGGC
CCTAAAGCATCTCAAGGGCGATGGCTACCAATTGGGGCCAAGGCTAACCC
TTCGACGGGATCAGCTGGAGGCCATGGTAGGACTAGTGGGTCCGTTCCAT
GCTCTGGGCTACGCCACGAAAATCCTCCAGCCGAACGTTCATGCTCGTTT
GCGCGCCGGAGTGGTGGACATGCCCTTCGTGTCCAGCTCAGGAAAGGGCA
TCTTTGATGTCCTCTATCGCGTGGCTTTCGATCGGTTCTACGAGTTCTAC
GACCGGCAAAAGGAGCAGCTCCTCCAGGGGGCAGACCCCGGATTCGGGGC
CGCCATCGAGCGACTGCGGGAGAAGTACTTCAAGCAGCCAACTCTCCTGC
TGGAGAGAATCCGCACCAGCTCCTTTGCCGAAGATCAACCGGACAGCCAC
TTTGCCACCTTTCTGCACGGCGACTACAACAGGAACAACGTGCTGTTCCA
CTACGGCGCTGAAGATAAGGTGGACGCTATCAAAGCCATCGATTTCCAGG
AGCTGCGCTTCAGCACTACGGCCATTGACCTGAGCTTCTTTATGTACATG
AACACGCCATCCGAAGGAAGGAAGGAGATCTACGCCGACTTGTTGCGCAA
GTACCATCGAAGCATGATCGAAATGTTGGAACTGGTTCTGCGCCGAAACC
GGAACGAGTTGACCGACGATCGGGTGGACCAGTTGCTACAGGAATACAGC
TTCGAACGCTTCAATGCCCACTTCAAACGATATGCCTTCTACGGACCAAT
GGTATGCATGCACTTCCTTCCCTGGCTGCTCGGCACCGAGAAGGATTGCG
CCGAGTTGTCCCGCCTCTTCGAGACGGATATGCACGGCCCCGCCTTCCAC
CAGTTGTCCTTGGACATCGCTGGCGATGAGGCGAACCAGGAGATCTTCAA
GACCGTTCGTCACGCCTATGAGCATGGCTACATGGACGAGATTTAGATTC
CCTTGCACAATTCCATACTTAAAGCATTTACAATTTAAATTTAAACCTAA
TTTGAGACTGTATTTACGAACTATTTACAATTTGAACTTCGCAACTAATG
CTAAATGAACGCGACAAGGTGGAGGAAGTGTAATCGAGGTAAACAACAAT
GCTTAAATGCCCCTATATTCAAGCGGAATAAAATCATACACTTTAAAAAA
AAAAAAAAAAAAA

LD42035.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5126-RA 1795 CG5126-RA 60..1705 1..1646 8230 100 Plus
CG4896-RE 3756 CG4896-RE 3592..3756 1646..1482 825 100 Minus
CG4896-RD 3176 CG4896-RD 3017..3176 1646..1487 800 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1182247..1183423 1644..468 5810 99.6 Minus
chr2L 23010047 chr2L 1183477..1183947 471..1 2355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1182295..1183473 1646..468 5895 100 Minus
2L 23513712 2L 1183527..1183997 471..1 2355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1182295..1183473 1646..468 5895 100 Minus
2L 23513712 2L 1183527..1183997 471..1 2355 100 Minus
Blast to na_te.dros performed 2019-03-15 22:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1293..1366 1539..1460 116 65 Minus

LD42035.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:54 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1182247..1183421 470..1644 99 <- Minus
chr2L 1183479..1183947 1..469 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:36 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 1..1368 79..1446 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:28 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 1..1368 79..1446 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:50 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 1..1368 79..1446 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:56 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 1..1368 79..1446 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:45 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 1..1368 79..1446 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:43 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 25..1668 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:28 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 25..1668 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:50 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 24..1667 1..1644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:56 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 25..1668 1..1644 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:45 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
CG5126-RA 24..1667 1..1644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:54 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1182297..1183471 470..1644 100 <- Minus
2L 1183529..1183997 1..469 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:54 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1182297..1183471 470..1644 100 <- Minus
2L 1183529..1183997 1..469 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:54 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1182297..1183471 470..1644 100 <- Minus
2L 1183529..1183997 1..469 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:50 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1182297..1183471 470..1644 100 <- Minus
arm_2L 1183529..1183997 1..469 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:56 Download gff for LD42035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1182297..1183471 470..1644 100 <- Minus
2L 1183529..1183997 1..469 100   Minus

LD42035.hyp Sequence

Translation from 0 to 1445

> LD42035.hyp
KYTPTCVYCQLRLPIQIAIDSCVEVTMSTQQQQLDYIERHLVYDIFKNFG
PSASLESHSVECSNGLDGFMSALYTVTLDVVIAERKRTEVVLVKFMKGTE
EFRESSNSYIQFSNEIFAYAEILPAYENVLRTSHLESEVVKNWVPCCYFA
RFGHVEGLGNGRESVLALKHLKGDGYQLGPRLTLRRDQLEAMVGLVGPFH
ALGYATKILQPNVHARLRAGVVDMPFVSSSGKGIFDVLYRVAFDRFYEFY
DRQKEQLLQGADPGFGAAIERLREKYFKQPTLLLERIRTSSFAEDQPDSH
FATFLHGDYNRNNVLFHYGAEDKVDAIKAIDFQELRFSTTAIDLSFFMYM
NTPSEGRKEIYADLLRKYHRSMIEMLELVLRRNRNELTDDRVDQLLQEYS
FERFNAHFKRYAFYGPMVCMHFLPWLLGTEKDCAELSRLFETDMHGPAFH
QLSLDIAGDEANQEIFKTVRHAYEHGYMDEI*

LD42035.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5126-PA 455 CG5126-PA 1..455 27..481 2384 100 Plus
CG11893-PA 416 CG11893-PA 20..416 36..481 211 20.8 Plus
CG31300-PA 422 CG31300-PA 20..339 36..379 203 21.9 Plus
CG2004-PG 425 CG2004-PG 44..424 67..478 179 24.1 Plus
CG2004-PF 425 CG2004-PF 44..424 67..478 179 24.1 Plus

LD42035.pep Sequence

Translation from 78 to 1445

> LD42035.pep
MSTQQQQLDYIERHLVYDIFKNFGPSASLESHSVECSNGLDGFMSALYTV
TLDVVIAERKRTEVVLVKFMKGTEEFRESSNSYIQFSNEIFAYAEILPAY
ENVLRTSHLESEVVKNWVPCCYFARFGHVEGLGNGRESVLALKHLKGDGY
QLGPRLTLRRDQLEAMVGLVGPFHALGYATKILQPNVHARLRAGVVDMPF
VSSSGKGIFDVLYRVAFDRFYEFYDRQKEQLLQGADPGFGAAIERLREKY
FKQPTLLLERIRTSSFAEDQPDSHFATFLHGDYNRNNVLFHYGAEDKVDA
IKAIDFQELRFSTTAIDLSFFMYMNTPSEGRKEIYADLLRKYHRSMIEML
ELVLRRNRNELTDDRVDQLLQEYSFERFNAHFKRYAFYGPMVCMHFLPWL
LGTEKDCAELSRLFETDMHGPAFHQLSLDIAGDEANQEIFKTVRHAYEHG
YMDEI*

LD42035.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20839-PA 317 GF20839-PA 1..158 1..158 654 76.6 Plus
Dana\GF20839-PA 317 GF20839-PA 259..317 397..455 288 86.4 Plus
Dana\GF18512-PA 449 GF18512-PA 39..357 18..353 227 25.2 Plus
Dana\GF17566-PA 422 GF17566-PA 54..390 41..417 188 20.4 Plus
Dana\GF10136-PA 471 GF10136-PA 54..403 34..398 186 23.5 Plus
Dana\GF19128-PA 426 GF19128-PA 31..425 13..452 184 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24605-PA 455 GG24605-PA 1..455 1..455 2321 94.9 Plus
Dere\GG17657-PA 457 GG17657-PA 1..457 1..455 1936 77.5 Plus
Dere\GG22726-PA 438 GG22726-PA 33..414 18..424 218 23.5 Plus
Dere\GG11392-PA 422 GG11392-PA 54..336 41..350 194 22.5 Plus
Dere\GG20590-PA 439 GG20590-PA 98..354 86..373 169 24.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12143-PA 459 GH12143-PA 1..459 1..455 1468 60.3 Plus
Dgri\GH12146-PA 137 GH12146-PA 1..88 44..131 260 54.5 Plus
Dgri\GH15763-PA 443 GH15763-PA 33..401 18..410 188 22.5 Plus
Dgri\GH12146-PA 137 GH12146-PA 89..137 375..455 174 42 Plus
Dgri\GH14961-PA 452 GH14961-PA 54..451 34..453 163 21.9 Plus
Dgri\GH18230-PA 420 GH18230-PA 54..339 41..353 156 20.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5126-PA 455 CG5126-PA 1..455 1..455 2384 100 Plus
CG11893-PA 416 CG11893-PA 20..416 10..455 211 20.8 Plus
CG14314-PA 438 CG14314-PA 33..346 18..353 210 23.8 Plus
CG31300-PA 422 CG31300-PA 20..339 10..353 203 21.9 Plus
CG2004-PG 425 CG2004-PG 44..424 41..452 179 24.1 Plus
CG2004-PF 425 CG2004-PF 44..424 41..452 179 24.1 Plus
CG2004-PD 425 CG2004-PD 44..424 41..452 179 24.1 Plus
CG2004-PC 425 CG2004-PC 44..424 41..452 179 24.1 Plus
CG2004-PA 425 CG2004-PA 44..424 41..452 179 24.1 Plus
CG13658-PB 422 CG13658-PB 54..339 41..353 172 21.8 Plus
CG5644-PA 459 CG5644-PA 56..452 34..452 171 23 Plus
CG31104-PA 420 CG31104-PA 18..420 10..455 156 18.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16200-PA 456 GI16200-PA 1..456 1..455 1592 63.2 Plus
Dmoj\GI23724-PA 447 GI23724-PA 37..405 18..410 199 23.6 Plus
Dmoj\GI15575-PA 420 GI15575-PA 43..419 41..452 173 24.6 Plus
Dmoj\GI19247-PA 457 GI19247-PA 99..421 86..448 163 23.3 Plus
Dmoj\GI19246-PA 457 GI19246-PA 99..421 86..448 160 22.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26879-PA 456 GL26879-PA 1..456 1..455 1836 76.1 Plus
Dper\GL12598-PA 448 GL12598-PA 37..355 18..353 213 23.5 Plus
Dper\GL15044-PA 456 GL15044-PA 59..449 34..452 171 24.7 Plus
Dper\GL13040-PA 424 GL13040-PA 44..389 41..416 159 24.1 Plus
Dper\GL10725-PA 434 GL10725-PA 87..314 74..331 158 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22648-PA 456 GA22648-PA 1..456 1..455 1847 77.4 Plus
Dpse\GA12901-PA 448 GA12901-PA 37..355 18..353 212 23.5 Plus
Dpse\GA16250-PA 422 GA16250-PA 45..390 32..417 174 21.3 Plus
Dpse\GA19027-PA 456 GA19027-PA 59..449 34..452 171 24.7 Plus
Dpse\GA15179-PA 424 GA15179-PA 44..423 41..452 160 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16618-PA 386 GM16618-PA 1..386 70..455 2036 98.2 Plus
Dsec\GM17835-PA 422 GM17835-PA 54..339 41..353 211 23.7 Plus
Dsec\GM15287-PA 439 GM15287-PA 34..397 18..410 209 22.8 Plus
Dsec\GM21117-PA 425 GM21117-PA 30..424 13..452 181 24.2 Plus
Dsec\GM24900-PA 459 GM24900-PA 56..452 34..452 164 23 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22920-PA 455 GD22920-PA 1..455 1..455 2400 98.2 Plus
Dsim\GD21204-PA 422 GD21204-PA 54..339 41..353 211 24.3 Plus
Dsim\GD19214-PA 368 GD19214-PA 34..347 18..353 209 23.5 Plus
Dsim\GD21209-PA 416 GD21209-PA 20..416 10..455 190 20.2 Plus
Dsim\GD16097-PA 425 GD16097-PA 30..424 13..452 184 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15891-PA 456 GJ15891-PA 1..456 1..455 1593 64.3 Plus
Dvir\GJ23282-PA 448 GJ23282-PA 38..416 18..420 183 21.9 Plus
Dvir\GJ15182-PA 420 GJ15182-PA 20..419 18..452 169 23.4 Plus
Dvir\GJ13682-PA 443 GJ13682-PA 46..441 34..452 161 22.6 Plus
Dvir\GJ23473-PA 422 GJ23473-PA 42..336 29..351 151 21.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25451-PA 455 GK25451-PA 1..455 1..455 1505 61.4 Plus
Dwil\GK11249-PA 440 GK11249-PA 38..349 23..353 195 24 Plus
Dwil\GK20724-PA 436 GK20724-PA 40..419 29..448 169 22.8 Plus
Dwil\GK12285-PA 492 GK12285-PA 152..488 86..455 168 23.3 Plus
Dwil\GK10325-PA 424 GK10325-PA 24..423 18..452 159 23.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15699-PA 455 GE15699-PA 1..455 1..455 2310 93.4 Plus
Dyak\GE16447-PA 455 GE16447-PA 1..455 1..455 1953 77.6 Plus
Dyak\GE25520-PA 438 GE25520-PA 33..346 18..353 209 23.5 Plus
Dyak\GE17434-PA 425 GE17434-PA 30..424 13..452 190 24.2 Plus
Dyak\GE23592-PA 416 GE23592-PA 20..333 10..353 181 22.1 Plus