Clone LD42037 Report

Search the DGRC for LD42037

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:37
Vector:pOT2
Associated Gene/TranscriptCG8420-RA
Protein status:LD42037.pep: gold
Preliminary Size:1984
Sequenced Size:1961

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8420 2001-01-01 Release 2 assignment
CG8420 2001-07-04 Blastp of sequenced clone
CG8420 2003-01-01 Sim4 clustering to Release 3
CG8420 2008-04-29 Release 5.5 accounting
CG8420 2008-08-15 Release 5.9 accounting
CG8420 2008-12-18 5.12 accounting

Clone Sequence Records

LD42037.complete Sequence

1961 bp (1961 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051945

> LD42037.complete
AGTTTTCGGCTGTGCTGGCTGCTCTACGCTGCGATCTCCGTTCTCCGTTC
TCCAATCTTTGTAATATCTGTTTAGATATACATAGTTATAGTATATACAT
ACATATATTTCGTGTGCTCAGTGGAGCGTCTTCCGCGTTTTGTGGCTGCG
TCGCTTAATTGGCCCAAAAGTATCTCAAGTGTGTGATTGTGAAAGTTCCT
GAAGCAAAATGTACGTGAGACGAGCTCTGCTCTTGGCCTGCCTGCTGTGC
CTCCAGCCGCTGGGTCCATCTATGGCCAGCGAGGATGAGTCCAATCCGCT
GCTGGACATGGCCTCCATGTTCTTCCAGGAGGCGCTGTCCAACCAGAACG
GTGGCAACAATGGAGGAGGCGGTGCTGGTTTGGCGGGTGTGGCCTCGCTA
ATTGGCACCTTCATGCAAGCGAGTGGCAAATCTGGAGGCGCCGGAGCAGG
AGGCGGCGGTGCTGGTGGCGCCATGCAGATCCTCTCGGGCCTGGGCAGTC
TTCTGTCCAAGAGTCAGGGCGGTCAGAGCGGTGGCTTCGATCCCTCCATC
ATTGGCAATGTCCTCGAGATGTTCACCCAGGGCGATGACGAGGAAGCCAC
TCCACAGCAAAAGCGCAGCAATGGCGGTGGCTCTGAATCTGGCATTGGTC
TGGATACCATACTGCAAGTGGCATCCGCCTTCATGAACACCCAGGGCAAC
GATAAGGCCACACATCATCACCAGCAGAAGCGATCCACCGCCACGGAACC
GGAATCCGAGAACGGACTGATGAACCTTCTGCCACTGGTCATGCAGGCGG
TTAGCTCCTTTGCCGGTCCCGAGGGTCAGAGCACCCAGGAGAAGCACAAG
AGCCACGCCTGGGTGCTGCCCCCATTCCTGGAGCACATTCACGTGCTGTG
GGATCACTTCTCCAACTCCGAGCTGGCTGATGCGTTGTACGAGAAGTCCG
GAGTTAACAAAATCATGAAGGGCTTCAAGGGTTCCGATGGCAAGCTGGAC
TATGATAAGCTCTTCGAGTCGCTGAATAACCAATCCTTCCGTCGCCGCTG
GATCAAGTCGGCCACACTCTACCTGGCCGACTGGGCCAGCTACCTGGCCA
ATCCCGAGGTGTATCTCAGGTACTTCCAGACGGCACAGATCATGTTTAAC
GGCTTGCTGAAGTCTCAAGGTTACCCCAAGCAGACCCACTTCGATCCCTC
CCGTCCGGGCGAGACCATCTCGAATCTCTTGGACCATGTGGCCAAGCATC
ATCTGAACGTTAAGATCGATTCGAGGCAGTACGTCAAGCCAGCCGTGGGC
TATGCCAAGGAACTGCTAAAACTTGGCCAGGCACGCGGATTACTTCAGTT
CAATGCCACCGAGATCAGCGACAAGCTAACGGATACGCTTAACCTGGAGG
TTATTGAACCGGTGCTGAAAGTCCATCGCGCCTACAGATACATCTCCAAG
TCGCCGCAATGCGATCGCTACGTGCTCTGTCAGCTGAATGCAGCGGCTCT
CGATCAGCAGGAGAAGCAGAGGCAGCACGACCAATACCAGCAGCACCACC
AGCCCAAGCAGAGCCAACTGAATCGCCCGACATCGGCGTCCAGTCTAATT
GCCGGAGTTAGTCCGAAAATCGTTAAGATCGGGAGCATGGGTGCGGCAAT
CTTCATTAGCACGGAAACCGGTACGCCGTTCTGGACCCTCTTCGGTGTGA
TCAATGCGCCATACAATTGCGAGGCCAAATATCCAGTCGACTGCAATGGT
TTCCACGAGGGCGAGGCCAAGGTGACCACGGAATATATCCACAACGAGTT
GTAGTATTCCAGTTGCAAATGGACAAGCGAGATCCGGACAAGAAAAGTAG
AAGACGAAGGCTCATTAAGACGATTTAGCTGTAATTGAGATAAAGATTTC
GTGTGTATATAGTATTACGGATTGAAATATATATTTAAATTTAAAAAAAA
AAAAAAAAAAA

LD42037.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420.a 2119 CG8420.a 171..2115 1..1945 9725 100 Plus
CG8420-RA 2215 CG8420-RA 221..2165 1..1945 9725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5073260..5074230 1..971 4855 100 Plus
chr3R 27901430 chr3R 5076458..5076784 1398..1724 1620 99.7 Plus
chr3R 27901430 chr3R 5075709..5075993 1117..1401 1410 99.6 Plus
chr3R 27901430 chr3R 5077015..5077235 1722..1942 1030 97.7 Plus
chr3R 27901430 chr3R 5074615..5074767 969..1121 765 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9247466..9248436 1..971 4855 100 Plus
3R 32079331 3R 9250654..9250980 1398..1724 1635 100 Plus
3R 32079331 3R 9249917..9250201 1117..1401 1425 100 Plus
3R 32079331 3R 9251211..9251434 1722..1945 1120 100 Plus
3R 32079331 3R 9248823..9248975 969..1121 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8988297..8989267 1..971 4855 100 Plus
3R 31820162 3R 8991485..8991811 1398..1724 1635 100 Plus
3R 31820162 3R 8990748..8991032 1117..1401 1425 100 Plus
3R 31820162 3R 8992042..8992265 1722..1945 1120 100 Plus
3R 31820162 3R 8989654..8989806 969..1121 765 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:01:50 has no hits.

LD42037.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:02:28 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5073260..5074229 1..970 100 -> Plus
chr3R 5074617..5074765 971..1119 100 -> Plus
chr3R 5075712..5075991 1120..1399 99 -> Plus
chr3R 5076460..5076783 1400..1723 99 -> Plus
chr3R 5077017..5077213 1724..1920 97 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:24:37 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 1..1596 209..1804 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:29 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 1..1596 209..1804 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:36 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 1..1596 209..1804 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:57 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 1..1596 209..1804 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:17 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 1..1596 209..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:45 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 16..1957 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:29 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 16..1957 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:36 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 18..1959 1..1942 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:58 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 16..1957 1..1942 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:17 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 18..1959 1..1942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:28 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9247466..9248435 1..970 100 -> Plus
3R 9248825..9248973 971..1119 100 -> Plus
3R 9249920..9250199 1120..1399 100 -> Plus
3R 9250656..9250979 1400..1723 100 -> Plus
3R 9251213..9251431 1724..1942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:28 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9247466..9248435 1..970 100 -> Plus
3R 9248825..9248973 971..1119 100 -> Plus
3R 9249920..9250199 1120..1399 100 -> Plus
3R 9250656..9250979 1400..1723 100 -> Plus
3R 9251213..9251431 1724..1942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:02:28 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9247466..9248435 1..970 100 -> Plus
3R 9248825..9248973 971..1119 100 -> Plus
3R 9249920..9250199 1120..1399 100 -> Plus
3R 9250656..9250979 1400..1723 100 -> Plus
3R 9251213..9251431 1724..1942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:36 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5073188..5074157 1..970 100 -> Plus
arm_3R 5074547..5074695 971..1119 100 -> Plus
arm_3R 5075642..5075921 1120..1399 100 -> Plus
arm_3R 5076378..5076701 1400..1723 100 -> Plus
arm_3R 5076935..5077153 1724..1942 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:58 Download gff for LD42037.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8988297..8989266 1..970 100 -> Plus
3R 8989656..8989804 971..1119 100 -> Plus
3R 8990751..8991030 1120..1399 100 -> Plus
3R 8991487..8991810 1400..1723 100 -> Plus
3R 8992044..8992262 1724..1942 100   Plus

LD42037.pep Sequence

Translation from 208 to 1803

> LD42037.pep
MYVRRALLLACLLCLQPLGPSMASEDESNPLLDMASMFFQEALSNQNGGN
NGGGGAGLAGVASLIGTFMQASGKSGGAGAGGGGAGGAMQILSGLGSLLS
KSQGGQSGGFDPSIIGNVLEMFTQGDDEEATPQQKRSNGGGSESGIGLDT
ILQVASAFMNTQGNDKATHHHQQKRSTATEPESENGLMNLLPLVMQAVSS
FAGPEGQSTQEKHKSHAWVLPPFLEHIHVLWDHFSNSELADALYEKSGVN
KIMKGFKGSDGKLDYDKLFESLNNQSFRRRWIKSATLYLADWASYLANPE
VYLRYFQTAQIMFNGLLKSQGYPKQTHFDPSRPGETISNLLDHVAKHHLN
VKIDSRQYVKPAVGYAKELLKLGQARGLLQFNATEISDKLTDTLNLEVIE
PVLKVHRAYRYISKSPQCDRYVLCQLNAAALDQQEKQRQHDQYQQHHQPK
QSQLNRPTSASSLIAGVSPKIVKIGSMGAAIFISTETGTPFWTLFGVINA
PYNCEAKYPVDCNGFHEGEAKVTTEYIHNEL*

LD42037.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16583-PA 526 GF16583-PA 1..526 1..531 2199 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15312-PA 535 GG15312-PA 2..535 1..531 2727 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19923-PA 539 GH19923-PA 1..539 1..531 2126 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-PA 531 CG8420-PA 1..531 1..531 2775 100 Plus
CG8420-PB 220 CG8420-PB 1..220 312..531 1160 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22041-PA 538 GI22041-PA 1..538 1..531 1973 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13940-PA 514 GL13940-PA 8..514 33..531 2135 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21065-PA 538 GA21065-PA 1..538 1..531 2253 85.8 Plus
Dpse\GA21065-PB 219 GA21065-PB 1..219 312..531 998 89.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23786-PA 267 GM23786-PA 38..267 305..531 1227 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18597-PA 534 GD18597-PA 1..534 1..531 2805 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24093-PA 533 GJ24093-PA 1..533 1..531 2103 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22429-PA 539 GK22429-PA 1..539 1..531 2134 80 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25931-PA 531 GE25931-PA 2..531 1..531 2763 97 Plus

LD42037.hyp Sequence

Translation from 208 to 1803

> LD42037.hyp
MYVRRALLLACLLCLQPLGPSMASEDESNPLLDMASMFFQEALSNQNGGN
NGGGGAGLAGVASLIGTFMQASGKSGGAGAGGGGAGGAMQILSGLGSLLS
KSQGGQSGGFDPSIIGNVLEMFTQGDDEEATPQQKRSNGGGSESGIGLDT
ILQVASAFMNTQGNDKATHHHQQKRSTATEPESENGLMNLLPLVMQAVSS
FAGPEGQSTQEKHKSHAWVLPPFLEHIHVLWDHFSNSELADALYEKSGVN
KIMKGFKGSDGKLDYDKLFESLNNQSFRRRWIKSATLYLADWASYLANPE
VYLRYFQTAQIMFNGLLKSQGYPKQTHFDPSRPGETISNLLDHVAKHHLN
VKIDSRQYVKPAVGYAKELLKLGQARGLLQFNATEISDKLTDTLNLEVIE
PVLKVHRAYRYISKSPQCDRYVLCQLNAAALDQQEKQRQHDQYQQHHQPK
QSQLNRPTSASSLIAGVSPKIVKIGSMGAAIFISTETGTPFWTLFGVINA
PYNCEAKYPVDCNGFHEGEAKVTTEYIHNEL*

LD42037.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-PA 531 CG8420-PA 1..531 1..531 2775 100 Plus
CG8420-PB 220 CG8420-PB 1..220 312..531 1160 100 Plus