Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD42041.complete Sequence
2156 bp assembled on 2011-02-17
GenBank Submission: BT126028.1
> LD42041.complete
CTCAAATTTAAAAAGTGTAAATATCCTGAGGAAAATTAAAAACACTTACA
TTAATTGCTTGAAAAATGAGTAGTATGGCTAAATCGCCAGATATGCGAAC
TCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAAA
GGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTGC
CAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCGA
TGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAGC
GATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTCA
TTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACACC
AGAGTTCCGTAGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTC
CAAGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGA
ACTCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGA
ACTTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCC
GTCCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGC
TTGGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAG
CTTTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCA
AGGATCCGAAAAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACC
TCAAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCG
GCGGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACC
AGTTACGTCAGCTTATCTCGGGTTTTGTGAAACAACTAGTGCGCCTCCTA
CCCTTTAATGGGATAACATTTTCGCATCTTAGCAGGGATTGCTATGTGCA
GCAGATGGTGGAGGCACTGCAGCAGCTGCAGTACACCAAAAAGGTGAACA
AAAGCTGGCTTCAAACGCCGAACAGCACACAAGCCATCGCCCATGTGCTG
GAATTACTCAATTTCTTGCTGGATGTCCTCGAACATCGAAAAGGAGAAGG
CATGTGTGCGCTCCCCGTTGTTTCTGAAAAGCAGAGAATTGAACAACTTG
CATCGGCATCTGGTACATCCTATGATGTAATGAGCCTGCAACAGAAGTTT
GAAAACATAAAAATAGAGAAAGAAAGATTAAACAATTACCAAGAATCTCT
GATGCCGGAATCCCCCGTATCCAAGGACATGGATAAAGTTACGGAGCGCG
ATGGGAATCAGGACTTCGTCAGACTCCTGGATTTTCAAAAAGAGACCCTC
CATGAACTCCAACTGCAACGCCTGCGTCTCCAGGAGTTCTCCGAGCTCGT
AAGCCTCGCCAAGATAAAATTAAAACGCTGTTGTAAGGCTAACAAGCAAT
GCATCGAAGCCTTTAATGACCAAATACAAGACTTGGCCGACTGTGTGGTT
TTAAGAAACAGAAATATCGGCCTTCTAACCCAATTACATTTGAACGATAA
TCCAAAGGAGGAGGAGTTGCACGAACGTATGAAGCAACTGCAGCGGCTGT
ATGAGGATAATTATTCAAATCTTCTACAGCTAAACATTAAGCCGCCCCAG
GGAAGCCCTTAGGCGAACATAAGCCACATCCCTCATTGAATGCCAGTTAA
TTTAAGCAAATATTTGCGTGTTGCGTAAGTTGAACACCCGAACCCACCGT
CTAAGCTCCTGGCTTAGTAGTCCTCCTGTATTTCACAGATTTATTTAATT
GAATTTATCAACTGAAAGTCTCGGCAACATCCTGGCCTGGATTTAAGTTC
GTGTAATTGACATTTAAATGAGTCATCGGCAGCCTGGCTACACTAAGTCA
ATGGAAATAGCTGCAAAGTTAAGCAGCTTAGCTTTGATTTGCCAAAATAT
TTTAAATTGCACTACCATTTCATTGGTATATTTTGAGTTTTCCATTCGTT
ATTTAAAGTTGCCATTATTGTCATACCAATGTATAGATTCCATATCAAGC
GGAATAAATAATACTTAAGGAGTCACTTTCATTTCGTAAAAAAAAAAAAA
AAAAAA
LD42041.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 2046126..2047702 | 561..2137 | 7795 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 2045396..2045708 | 97..409 | 1520 | 99 | Plus |
chr2L | 23010047 | chr2L | 2045765..2045915 | 412..562 | 710 | 98 | Plus |
chr2L | 23010047 | chr2L | 2045242..2045338 | 1..97 | 440 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2046426..2048003 | 561..2138 | 7890 | 100 | Plus |
2L | 23513712 | 2L | 2045699..2046011 | 97..409 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 2046065..2046218 | 409..562 | 770 | 100 | Plus |
2L | 23513712 | 2L | 2045545..2045641 | 1..97 | 485 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2046426..2048003 | 561..2138 | 7890 | 100 | Plus |
2L | 23513712 | 2L | 2045699..2046011 | 97..409 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 2046065..2046218 | 409..562 | 770 | 100 | Plus |
2L | 23513712 | 2L | 2045545..2045641 | 1..97 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-17 01:39:42 has no hits.
LD42041.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:40:27 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 2045242..2045338 | 1..97 | 96 | -> | Plus |
chr2L | 2045397..2045708 | 98..409 | 99 | -> | Plus |
chr2L | 2045763..2045915 | 410..562 | 97 | -> | Plus |
chr2L | 2046128..2047702 | 563..2137 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 10:21:06 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-RA | 1..1644 | 66..1712 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:47:29 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RB | 1..1647 | 66..1712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:06:02 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RB | 1..1647 | 66..1712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:21:05 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-RA | 21..1791 | 1..1774 | 99 | == | Plus |
CG31672-RA | 1792..2090 | 1839..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:47:29 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RB | 52..2188 | 1..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:06:02 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RB | 52..2188 | 1..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045545..2045641 | 1..97 | 100 | -> | Plus |
2L | 2045700..2046011 | 98..409 | 100 | -> | Plus |
2L | 2046066..2046218 | 410..562 | 100 | -> | Plus |
2L | 2046428..2048002 | 563..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045545..2045641 | 1..97 | 100 | -> | Plus |
2L | 2045700..2046011 | 98..409 | 100 | -> | Plus |
2L | 2046066..2046218 | 410..562 | 100 | -> | Plus |
2L | 2046428..2048002 | 563..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045545..2045641 | 1..97 | 100 | -> | Plus |
2L | 2045700..2046011 | 98..409 | 100 | -> | Plus |
2L | 2046066..2046218 | 410..562 | 100 | -> | Plus |
2L | 2046428..2048002 | 563..2137 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:47:29 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2045545..2045641 | 1..97 | 100 | -> | Plus |
arm_2L | 2045700..2046011 | 98..409 | 100 | -> | Plus |
arm_2L | 2046066..2046218 | 410..562 | 100 | -> | Plus |
arm_2L | 2046428..2048002 | 563..2137 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:12 Download gff for
LD42041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045700..2046011 | 98..409 | 100 | -> | Plus |
2L | 2046066..2046218 | 410..562 | 100 | -> | Plus |
2L | 2046428..2048002 | 563..2137 | 100 | | Plus |
2L | 2045545..2045641 | 1..97 | 100 | -> | Plus |
LD42041.pep Sequence
Translation from 65 to 1711
> LD42041.pep
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRSRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATK
IPSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTS
IDRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKL
DFKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGI
TFSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNF
LLDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKI
EKERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQL
QRLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRN
IGLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*
LD42041.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF14598-PA | 161 | GF14598-PA | 62..151 | 434..526 | 162 | 41.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24826-PA | 538 | GG24826-PA | 1..538 | 4..548 | 2263 | 79.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-PB | 548 | CG31672-PB | 1..548 | 1..548 | 2835 | 100 | Plus |
Kebab-PA | 547 | CG31672-PA | 1..547 | 1..548 | 2819 | 99.8 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL15313-PA | 549 | GL15313-PA | 14..299 | 109..371 | 384 | 39.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA26055-PA | 549 | GA26055-PA | 14..299 | 109..371 | 369 | 39.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16850-PA | 547 | GM16850-PA | 1..547 | 1..548 | 2675 | 92.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23129-PA | 547 | GD23129-PA | 1..547 | 1..548 | 2699 | 93.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17911-PA | 543 | GE17911-PA | 1..543 | 4..548 | 2391 | 84.6 | Plus |
LD42041.hyp Sequence
Translation from 65 to 1711
> LD42041.hyp
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRSRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATK
IPSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTS
IDRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKL
DFKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGI
TFSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNF
LLDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKI
EKERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQL
QRLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRN
IGLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*
LD42041.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-PB | 548 | CG31672-PB | 1..548 | 1..548 | 2835 | 100 | Plus |
Kebab-PA | 547 | CG31672-PA | 1..547 | 1..548 | 2819 | 99.8 | Plus |