Clone LD42041 Report

Search the DGRC for LD42041

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:41
Vector:pOT2
Associated Gene/TranscriptKebab-RB
Protein status:LD42041.pep: gold
Sequenced Size:2156

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31672 2010-12-02 CDS novel splice

Clone Sequence Records

LD42041.complete Sequence

2156 bp assembled on 2011-02-17

GenBank Submission: BT126028.1

> LD42041.complete
CTCAAATTTAAAAAGTGTAAATATCCTGAGGAAAATTAAAAACACTTACA
TTAATTGCTTGAAAAATGAGTAGTATGGCTAAATCGCCAGATATGCGAAC
TCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAAA
GGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTGC
CAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCGA
TGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAGC
GATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTCA
TTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACACC
AGAGTTCCGTAGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTC
CAAGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGA
ACTCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGA
ACTTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCC
GTCCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGC
TTGGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAG
CTTTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCA
AGGATCCGAAAAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACC
TCAAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCG
GCGGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACC
AGTTACGTCAGCTTATCTCGGGTTTTGTGAAACAACTAGTGCGCCTCCTA
CCCTTTAATGGGATAACATTTTCGCATCTTAGCAGGGATTGCTATGTGCA
GCAGATGGTGGAGGCACTGCAGCAGCTGCAGTACACCAAAAAGGTGAACA
AAAGCTGGCTTCAAACGCCGAACAGCACACAAGCCATCGCCCATGTGCTG
GAATTACTCAATTTCTTGCTGGATGTCCTCGAACATCGAAAAGGAGAAGG
CATGTGTGCGCTCCCCGTTGTTTCTGAAAAGCAGAGAATTGAACAACTTG
CATCGGCATCTGGTACATCCTATGATGTAATGAGCCTGCAACAGAAGTTT
GAAAACATAAAAATAGAGAAAGAAAGATTAAACAATTACCAAGAATCTCT
GATGCCGGAATCCCCCGTATCCAAGGACATGGATAAAGTTACGGAGCGCG
ATGGGAATCAGGACTTCGTCAGACTCCTGGATTTTCAAAAAGAGACCCTC
CATGAACTCCAACTGCAACGCCTGCGTCTCCAGGAGTTCTCCGAGCTCGT
AAGCCTCGCCAAGATAAAATTAAAACGCTGTTGTAAGGCTAACAAGCAAT
GCATCGAAGCCTTTAATGACCAAATACAAGACTTGGCCGACTGTGTGGTT
TTAAGAAACAGAAATATCGGCCTTCTAACCCAATTACATTTGAACGATAA
TCCAAAGGAGGAGGAGTTGCACGAACGTATGAAGCAACTGCAGCGGCTGT
ATGAGGATAATTATTCAAATCTTCTACAGCTAAACATTAAGCCGCCCCAG
GGAAGCCCTTAGGCGAACATAAGCCACATCCCTCATTGAATGCCAGTTAA
TTTAAGCAAATATTTGCGTGTTGCGTAAGTTGAACACCCGAACCCACCGT
CTAAGCTCCTGGCTTAGTAGTCCTCCTGTATTTCACAGATTTATTTAATT
GAATTTATCAACTGAAAGTCTCGGCAACATCCTGGCCTGGATTTAAGTTC
GTGTAATTGACATTTAAATGAGTCATCGGCAGCCTGGCTACACTAAGTCA
ATGGAAATAGCTGCAAAGTTAAGCAGCTTAGCTTTGATTTGCCAAAATAT
TTTAAATTGCACTACCATTTCATTGGTATATTTTGAGTTTTCCATTCGTT
ATTTAAAGTTGCCATTATTGTCATACCAATGTATAGATTCCATATCAAGC
GGAATAAATAATACTTAAGGAGTCACTTTCATTTCGTAAAAAAAAAAAAA
AAAAAA

LD42041.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2046126..2047702 561..2137 7795 99.6 Plus
chr2L 23010047 chr2L 2045396..2045708 97..409 1520 99 Plus
chr2L 23010047 chr2L 2045765..2045915 412..562 710 98 Plus
chr2L 23010047 chr2L 2045242..2045338 1..97 440 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2048003 561..2138 7890 100 Plus
2L 23513712 2L 2045699..2046011 97..409 1565 100 Plus
2L 23513712 2L 2046065..2046218 409..562 770 100 Plus
2L 23513712 2L 2045545..2045641 1..97 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2048003 561..2138 7890 100 Plus
2L 23513712 2L 2045699..2046011 97..409 1565 100 Plus
2L 23513712 2L 2046065..2046218 409..562 770 100 Plus
2L 23513712 2L 2045545..2045641 1..97 485 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:39:42 has no hits.

LD42041.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:40:27 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2045242..2045338 1..97 96 -> Plus
chr2L 2045397..2045708 98..409 99 -> Plus
chr2L 2045763..2045915 410..562 97 -> Plus
chr2L 2046128..2047702 563..2137 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 10:21:06 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..1644 66..1712 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:47:29 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RB 1..1647 66..1712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:06:02 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RB 1..1647 66..1712 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:21:05 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 21..1791 1..1774 99 == Plus
CG31672-RA 1792..2090 1839..2137 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:47:29 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RB 52..2188 1..2137 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:06:02 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RB 52..2188 1..2137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045545..2045641 1..97 100 -> Plus
2L 2045700..2046011 98..409 100 -> Plus
2L 2046066..2046218 410..562 100 -> Plus
2L 2046428..2048002 563..2137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045545..2045641 1..97 100 -> Plus
2L 2045700..2046011 98..409 100 -> Plus
2L 2046066..2046218 410..562 100 -> Plus
2L 2046428..2048002 563..2137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:40:27 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045545..2045641 1..97 100 -> Plus
2L 2045700..2046011 98..409 100 -> Plus
2L 2046066..2046218 410..562 100 -> Plus
2L 2046428..2048002 563..2137 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:47:29 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2045545..2045641 1..97 100 -> Plus
arm_2L 2045700..2046011 98..409 100 -> Plus
arm_2L 2046066..2046218 410..562 100 -> Plus
arm_2L 2046428..2048002 563..2137 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:12 Download gff for LD42041.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045700..2046011 98..409 100 -> Plus
2L 2046066..2046218 410..562 100 -> Plus
2L 2046428..2048002 563..2137 100   Plus
2L 2045545..2045641 1..97 100 -> Plus

LD42041.pep Sequence

Translation from 65 to 1711

> LD42041.pep
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRSRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATK
IPSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTS
IDRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKL
DFKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGI
TFSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNF
LLDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKI
EKERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQL
QRLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRN
IGLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*

LD42041.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14598-PA 161 GF14598-PA 62..151 434..526 162 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24826-PA 538 GG24826-PA 1..538 4..548 2263 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-PB 548 CG31672-PB 1..548 1..548 2835 100 Plus
Kebab-PA 547 CG31672-PA 1..547 1..548 2819 99.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15313-PA 549 GL15313-PA 14..299 109..371 384 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26055-PA 549 GA26055-PA 14..299 109..371 369 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16850-PA 547 GM16850-PA 1..547 1..548 2675 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23129-PA 547 GD23129-PA 1..547 1..548 2699 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17911-PA 543 GE17911-PA 1..543 4..548 2391 84.6 Plus

LD42041.hyp Sequence

Translation from 65 to 1711

> LD42041.hyp
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRSRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATK
IPSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTS
IDRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKL
DFKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGI
TFSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNF
LLDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKI
EKERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQL
QRLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRN
IGLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*

LD42041.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-PB 548 CG31672-PB 1..548 1..548 2835 100 Plus
Kebab-PA 547 CG31672-PA 1..547 1..548 2819 99.8 Plus