BDGP Sequence Production Resources |
Search the DGRC for LD42056
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 420 |
Well: | 56 |
Vector: | pOT2 |
Associated Gene/Transcript | CG3645-RA |
Protein status: | LD42056.pep: gold |
Preliminary Size: | 2006 |
Sequenced Size: | 1716 |
Gene | Date | Evidence |
---|---|---|
CG3645 | 2001-01-01 | Release 2 assignment |
CG17075 | 2001-01-01 | Release 2 assignment |
CG3645 | 2001-07-04 | Blastp of sequenced clone |
CG3645 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3645 | 2008-04-29 | Release 5.5 accounting |
CG3645 | 2008-08-15 | Release 5.9 accounting |
CG3645 | 2008-12-18 | 5.12 accounting |
1716 bp (1716 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051946
> LD42056.complete CTTTTGAATAAAAAATCAAATTAATAGTGTTTACTAGGAAAAACGTATGA AACTCAGTGAAAAAACTTTGCAAAAAACTTTTGGATTTCATTTGAATTTG CCATGGTGAACGATGAAGACGCCGCGCACCAAAGACCTAGCAAGCCCACC GGATACAACTTCTACCGCTCCTCCTTGGGATCCCCGCGTTATGTAGTGGC TCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAATGCTGTGCCGACGCT ATGGCGCCGAACTCTGCTACTCGCCAATGTACCATGCGAACCTCTTCGCC ACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACGTGTCCCGAGGACAG GCCATTGATCATCCAGTTCTGTGGCAACGATGCTCAACAAATCCTGGATG CAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGGACATAAATTTGGGT TGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGATCCTTCCTGCAGGA TGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACTGCACGCAAAACTAG CCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGGACCTTGAGAAGACC ATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGCCAGCTTCTGACTGT CCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGACCGGGGTGGCTAATT GGAACTACATTAAGAATGTGCGCCAGCACATCAAGATTCCAATGCTTGCC AACGGAAACATCCTGGCCCTGGACGACGTTCATCGTTGTCTGACTGAAAC AGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCTGCACAATCCGGCCA TCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGGCCCATGAGTACTTG GAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTTATACGAGGACATCT CTTCAAGCTCTTCCATCACATCATGAATATCCGGCAGAACTCTGAGTTAC GGCAATACCTAGCCACTGCAAATCAGCTCGTGCAATTCCAAGCCGTCGTG CAACAAGTACGGGCAAAATACGAGCCGTTCCACAAGGGCGAGGTGCCATA CGAGCCCGAACAAATGGCTGCTGGATCAGAGGAAGATCTGCCACTTTCTC CCTGGCTGTGTCAACCATATATACGCGCCTCACCCGAATCCCATCGCCAG AAGATTGCCGAAAAGGTGCGCGAGGCTGAGGATCCCAACCGAACCAAGCG GCAGTACTTCGACAAGGACGGCAAGGAGATCTCCCGCAAACGGATGAAGA AACTTCGAAGACGCCAGCGAAGACCCAACAAAACGGAGGCCCAGATCCAG CATCGGCACGAGAGGCGCCTGGAATACTGCTCGGAATGCGCCAATCCCCA GGGATCCAAGTGCGAGTTCCAGCTGTGCCGCGTGTGCTGCAAGGACAGGT GCTACAACAACGATCGCGATTGTCCTGGTCACGGGATCTTCATCAAATCC CGCCGAGCCAGGGCCAAGCTTTTTGAGGAGCACATCGCCCCGCAGGACCA CCAGAAGGTGACGAGAACTTCAGACGATGACCTGACGATAGCCCCAACGG ATGCGCAGGAGCCGCTTTGACCTTAAACCTGTACTTTAGGAAACACCCTT CTTGTTTTTGTTTCTATGACTGCGAATAAAAAAAAGCTTGTTTTAAAAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 252621..253177 | 1694..1138 | 2785 | 100 | Minus |
chr2L | 23010047 | chr2L | 253478..253923 | 971..526 | 2230 | 100 | Minus |
chr2L | 23010047 | chr2L | 253988..254435 | 526..79 | 2225 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 253252..253417 | 1137..972 | 830 | 100 | Minus |
chr2L | 23010047 | chr2L | 271662..271745 | 84..1 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 252584..253145 | 1699..1138 | 2810 | 100 | Minus |
2L | 23513712 | 2L | 253446..253891 | 971..526 | 2230 | 100 | Minus |
2L | 23513712 | 2L | 253956..254403 | 526..79 | 2225 | 99.8 | Minus |
2L | 23513712 | 2L | 253220..253385 | 1137..972 | 830 | 100 | Minus |
2L | 23513712 | 2L | 271629..271712 | 84..1 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 252584..253145 | 1699..1138 | 2810 | 100 | Minus |
2L | 23513712 | 2L | 253446..253891 | 971..526 | 2230 | 100 | Minus |
2L | 23513712 | 2L | 253956..254403 | 526..79 | 2225 | 99.7 | Minus |
2L | 23513712 | 2L | 253220..253385 | 1137..972 | 830 | 100 | Minus |
2L | 23513712 | 2L | 271629..271712 | 84..1 | 420 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 2782..2824 | 176..133 | 118 | 77.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 252621..253177 | 1138..1694 | 100 | <- | Minus |
chr2L | 253252..253417 | 972..1137 | 100 | <- | Minus |
chr2L | 253478..253922 | 527..971 | 100 | <- | Minus |
chr2L | 253988..254429 | 85..526 | 100 | <- | Minus |
chr2L | 271662..271745 | 1..84 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RB | 1..1518 | 103..1620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RB | 1..1518 | 103..1620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 1..1518 | 103..1620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RB | 1..1518 | 103..1620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 1..1518 | 103..1620 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 21..1714 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 21..1714 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 33..1726 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 21..1714 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3645-RA | 33..1726 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 271629..271712 | 1..84 | 100 | Minus | |
2L | 252589..253145 | 1138..1694 | 100 | <- | Minus |
2L | 253220..253385 | 972..1137 | 100 | <- | Minus |
2L | 253446..253890 | 527..971 | 100 | <- | Minus |
2L | 253956..254397 | 85..526 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 271629..271712 | 1..84 | 100 | Minus | |
2L | 252589..253145 | 1138..1694 | 100 | <- | Minus |
2L | 253220..253385 | 972..1137 | 100 | <- | Minus |
2L | 253446..253890 | 527..971 | 100 | <- | Minus |
2L | 253956..254397 | 85..526 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 271629..271712 | 1..84 | 100 | Minus | |
2L | 252589..253145 | 1138..1694 | 100 | <- | Minus |
2L | 253220..253385 | 972..1137 | 100 | <- | Minus |
2L | 253446..253890 | 527..971 | 100 | <- | Minus |
2L | 253956..254397 | 85..526 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 253446..253890 | 527..971 | 100 | <- | Minus |
arm_2L | 252589..253145 | 1138..1694 | 100 | <- | Minus |
arm_2L | 253220..253385 | 972..1137 | 100 | <- | Minus |
arm_2L | 253956..254397 | 85..526 | 100 | <- | Minus |
arm_2L | 271629..271712 | 1..84 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 252589..253145 | 1138..1694 | 100 | <- | Minus |
2L | 253220..253385 | 972..1137 | 100 | <- | Minus |
2L | 253446..253890 | 527..971 | 100 | <- | Minus |
2L | 253956..254397 | 85..526 | 100 | <- | Minus |
2L | 271629..271712 | 1..84 | 100 | Minus |
Translation from 102 to 1619
> LD42056.hyp MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD AQEPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3645-PC | 505 | CG3645-PC | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PB | 505 | CG3645-PB | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PA | 505 | CG3645-PA | 1..505 | 1..505 | 2721 | 100 | Plus |
CG10495-PA | 396 | CG10495-PA | 26..370 | 31..386 | 359 | 29.2 | Plus |
CG1434-PB | 473 | CG1434-PB | 25..282 | 29..268 | 266 | 30 | Plus |
Translation from 102 to 1619
> LD42056.pep MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD AQEPL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22874-PA | 509 | GF22874-PA | 1..509 | 1..505 | 2172 | 81.3 | Plus |
Dana\GF22885-PA | 513 | GF22885-PA | 1..485 | 1..484 | 2148 | 83.3 | Plus |
Dana\GF22896-PA | 148 | GF22896-PA | 1..141 | 1..141 | 673 | 87.2 | Plus |
Dana\GF14697-PA | 395 | GF14697-PA | 25..369 | 31..386 | 364 | 28.9 | Plus |
Dana\GF15959-PA | 460 | GF15959-PA | 12..269 | 29..268 | 273 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24669-PA | 505 | GG24669-PA | 1..505 | 1..505 | 2500 | 95.4 | Plus |
Dere\GG21157-PA | 396 | GG21157-PA | 26..370 | 31..386 | 353 | 29.7 | Plus |
Dere\GG17837-PA | 473 | GG17837-PA | 25..282 | 29..268 | 268 | 29.8 | Plus |
Dere\GG21206-PA | 609 | GG21206-PA | 263..493 | 29..254 | 212 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10224-PA | 503 | GH10224-PA | 1..497 | 1..504 | 1996 | 75.4 | Plus |
Dgri\GH11083-PA | 398 | GH11083-PA | 25..384 | 31..405 | 367 | 28.9 | Plus |
Dgri\GH12926-PA | 460 | GH12926-PA | 12..269 | 29..268 | 266 | 29.1 | Plus |
Dgri\GH13829-PA | 582 | GH13829-PA | 208..466 | 12..254 | 222 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3645-PC | 505 | CG3645-PC | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PB | 505 | CG3645-PB | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PA | 505 | CG3645-PA | 1..505 | 1..505 | 2721 | 100 | Plus |
CG10495-PA | 396 | CG10495-PA | 26..370 | 31..386 | 359 | 29.2 | Plus |
CG1434-PB | 473 | CG1434-PB | 25..282 | 29..268 | 266 | 30 | Plus |
CG1434-PA | 473 | CG1434-PA | 25..282 | 29..268 | 266 | 30 | Plus |
CG10463-PA | 604 | CG10463-PA | 258..488 | 29..254 | 198 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15082-PA | 510 | GI15082-PA | 6..501 | 11..500 | 2007 | 77.8 | Plus |
Dmoj\GI17600-PA | 397 | GI17600-PA | 6..320 | 10..314 | 346 | 31.4 | Plus |
Dmoj\GI14629-PA | 458 | GI14629-PA | 11..268 | 29..268 | 267 | 29.5 | Plus |
Dmoj\GI20204-PA | 614 | GI20204-PA | 268..498 | 29..254 | 221 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25830-PA | 507 | GL25830-PA | 1..477 | 1..477 | 2089 | 83.5 | Plus |
Dper\GL26162-PA | 398 | GL26162-PA | 26..372 | 31..386 | 406 | 31.3 | Plus |
Dper\GL14922-PA | 463 | GL14922-PA | 15..272 | 29..268 | 268 | 29.9 | Plus |
Dper\GL26174-PA | 577 | GL26174-PA | 231..461 | 29..254 | 222 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25459-PA | 507 | GA25459-PA | 1..477 | 1..477 | 2088 | 83.3 | Plus |
Dpse\GA10353-PA | 398 | GA10353-PA | 26..372 | 31..386 | 403 | 31.3 | Plus |
Dpse\GA26573-PA | 463 | GA26573-PA | 15..272 | 29..268 | 268 | 29.9 | Plus |
Dpse\GA10329-PA | 615 | GA10329-PA | 269..499 | 29..254 | 219 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16688-PA | 503 | GM16688-PA | 1..503 | 1..505 | 2667 | 97.4 | Plus |
Dsec\GM17321-PA | 316 | GM17321-PA | 26..300 | 31..303 | 355 | 33.3 | Plus |
Dsec\GM17665-PA | 473 | GM17665-PA | 25..282 | 29..268 | 288 | 29.9 | Plus |
Dsec\GM17377-PA | 605 | GM17377-PA | 225..489 | 6..254 | 219 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22975-PA | 505 | GD22975-PA | 1..505 | 1..505 | 2692 | 98 | Plus |
Dsim\GD24181-PA | 396 | GD24181-PA | 26..370 | 31..386 | 374 | 29.4 | Plus |
Dsim\GD17163-PA | 460 | GD17163-PA | 12..269 | 29..268 | 290 | 30.2 | Plus |
Dsim\GD24232-PA | 605 | GD24232-PA | 225..489 | 6..254 | 215 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17247-PA | 504 | GJ17247-PA | 1..479 | 1..477 | 2003 | 78.7 | Plus |
Dvir\GJ17945-PA | 399 | GJ17945-PA | 25..318 | 31..312 | 366 | 32.1 | Plus |
Dvir\GJ13589-PA | 590 | GJ13589-PA | 244..474 | 29..254 | 205 | 27 | Plus |
Dvir\GJ19062-PA | 137 | GJ19062-PA | 1..102 | 115..218 | 159 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21069-PA | 519 | GK21069-PA | 1..488 | 1..485 | 2010 | 78.1 | Plus |
Dwil\GK14658-PA | 404 | GK14658-PA | 30..306 | 31..303 | 354 | 31.1 | Plus |
Dwil\GK10156-PA | 458 | GK10156-PA | 10..269 | 27..268 | 276 | 30.4 | Plus |
Dwil\GK14924-PA | 579 | GK14924-PA | 233..463 | 29..254 | 223 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16327-PA | 505 | GE16327-PA | 1..505 | 1..505 | 2419 | 92.9 | Plus |
Dyak\GE13230-PA | 395 | GE13230-PA | 26..370 | 31..386 | 363 | 28.7 | Plus |
Dyak\GE17129-PA | 473 | GE17129-PA | 25..282 | 29..268 | 280 | 30.2 | Plus |
Dyak\GE13280-PA | 609 | GE13280-PA | 263..493 | 29..254 | 211 | 27 | Plus |