Clone LD42056 Report

Search the DGRC for LD42056

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:420
Well:56
Vector:pOT2
Associated Gene/TranscriptCG3645-RA
Protein status:LD42056.pep: gold
Preliminary Size:2006
Sequenced Size:1716

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3645 2001-01-01 Release 2 assignment
CG17075 2001-01-01 Release 2 assignment
CG3645 2001-07-04 Blastp of sequenced clone
CG3645 2003-01-01 Sim4 clustering to Release 3
CG3645 2008-04-29 Release 5.5 accounting
CG3645 2008-08-15 Release 5.9 accounting
CG3645 2008-12-18 5.12 accounting

Clone Sequence Records

LD42056.complete Sequence

1716 bp (1716 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051946

> LD42056.complete
CTTTTGAATAAAAAATCAAATTAATAGTGTTTACTAGGAAAAACGTATGA
AACTCAGTGAAAAAACTTTGCAAAAAACTTTTGGATTTCATTTGAATTTG
CCATGGTGAACGATGAAGACGCCGCGCACCAAAGACCTAGCAAGCCCACC
GGATACAACTTCTACCGCTCCTCCTTGGGATCCCCGCGTTATGTAGTGGC
TCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAATGCTGTGCCGACGCT
ATGGCGCCGAACTCTGCTACTCGCCAATGTACCATGCGAACCTCTTCGCC
ACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACGTGTCCCGAGGACAG
GCCATTGATCATCCAGTTCTGTGGCAACGATGCTCAACAAATCCTGGATG
CAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGGACATAAATTTGGGT
TGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGATCCTTCCTGCAGGA
TGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACTGCACGCAAAACTAG
CCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGGACCTTGAGAAGACC
ATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGCCAGCTTCTGACTGT
CCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGACCGGGGTGGCTAATT
GGAACTACATTAAGAATGTGCGCCAGCACATCAAGATTCCAATGCTTGCC
AACGGAAACATCCTGGCCCTGGACGACGTTCATCGTTGTCTGACTGAAAC
AGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCTGCACAATCCGGCCA
TCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGGCCCATGAGTACTTG
GAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTTATACGAGGACATCT
CTTCAAGCTCTTCCATCACATCATGAATATCCGGCAGAACTCTGAGTTAC
GGCAATACCTAGCCACTGCAAATCAGCTCGTGCAATTCCAAGCCGTCGTG
CAACAAGTACGGGCAAAATACGAGCCGTTCCACAAGGGCGAGGTGCCATA
CGAGCCCGAACAAATGGCTGCTGGATCAGAGGAAGATCTGCCACTTTCTC
CCTGGCTGTGTCAACCATATATACGCGCCTCACCCGAATCCCATCGCCAG
AAGATTGCCGAAAAGGTGCGCGAGGCTGAGGATCCCAACCGAACCAAGCG
GCAGTACTTCGACAAGGACGGCAAGGAGATCTCCCGCAAACGGATGAAGA
AACTTCGAAGACGCCAGCGAAGACCCAACAAAACGGAGGCCCAGATCCAG
CATCGGCACGAGAGGCGCCTGGAATACTGCTCGGAATGCGCCAATCCCCA
GGGATCCAAGTGCGAGTTCCAGCTGTGCCGCGTGTGCTGCAAGGACAGGT
GCTACAACAACGATCGCGATTGTCCTGGTCACGGGATCTTCATCAAATCC
CGCCGAGCCAGGGCCAAGCTTTTTGAGGAGCACATCGCCCCGCAGGACCA
CCAGAAGGTGACGAGAACTTCAGACGATGACCTGACGATAGCCCCAACGG
ATGCGCAGGAGCCGCTTTGACCTTAAACCTGTACTTTAGGAAACACCCTT
CTTGTTTTTGTTTCTATGACTGCGAATAAAAAAAAGCTTGTTTTAAAAAA
AAAAAAAAAAAAAAAA

LD42056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-RA 1842 CG3645-RA 47..1745 1..1699 8495 100 Plus
CG3645-RB 1751 CG3645-RB 126..1746 79..1699 8090 99.9 Plus
CG3645-RB 1751 CG3645-RB 21..104 1..84 420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 252621..253177 1694..1138 2785 100 Minus
chr2L 23010047 chr2L 253478..253923 971..526 2230 100 Minus
chr2L 23010047 chr2L 253988..254435 526..79 2225 99.8 Minus
chr2L 23010047 chr2L 253252..253417 1137..972 830 100 Minus
chr2L 23010047 chr2L 271662..271745 84..1 420 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:37:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 252584..253145 1699..1138 2810 100 Minus
2L 23513712 2L 253446..253891 971..526 2230 100 Minus
2L 23513712 2L 253956..254403 526..79 2225 99.8 Minus
2L 23513712 2L 253220..253385 1137..972 830 100 Minus
2L 23513712 2L 271629..271712 84..1 420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 252584..253145 1699..1138 2810 100 Minus
2L 23513712 2L 253446..253891 971..526 2230 100 Minus
2L 23513712 2L 253956..254403 526..79 2225 99.7 Minus
2L 23513712 2L 253220..253385 1137..972 830 100 Minus
2L 23513712 2L 271629..271712 84..1 420 100 Minus
Blast to na_te.dros performed 2019-03-15 22:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 2782..2824 176..133 118 77.3 Minus

LD42056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:31:55 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 252621..253177 1138..1694 100 <- Minus
chr2L 253252..253417 972..1137 100 <- Minus
chr2L 253478..253922 527..971 100 <- Minus
chr2L 253988..254429 85..526 100 <- Minus
chr2L 271662..271745 1..84 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:41 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 1..1518 103..1620 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:17 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 1..1518 103..1620 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:54 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 1..1518 103..1620 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:43 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 1..1518 103..1620 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:50 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 1..1518 103..1620 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:40 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 21..1714 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:17 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 21..1714 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:54 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 33..1726 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:43 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 21..1714 1..1694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:50 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 33..1726 1..1694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:55 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271629..271712 1..84 100   Minus
2L 252589..253145 1138..1694 100 <- Minus
2L 253220..253385 972..1137 100 <- Minus
2L 253446..253890 527..971 100 <- Minus
2L 253956..254397 85..526 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:55 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271629..271712 1..84 100   Minus
2L 252589..253145 1138..1694 100 <- Minus
2L 253220..253385 972..1137 100 <- Minus
2L 253446..253890 527..971 100 <- Minus
2L 253956..254397 85..526 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:31:55 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 271629..271712 1..84 100   Minus
2L 252589..253145 1138..1694 100 <- Minus
2L 253220..253385 972..1137 100 <- Minus
2L 253446..253890 527..971 100 <- Minus
2L 253956..254397 85..526 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:54 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 253446..253890 527..971 100 <- Minus
arm_2L 252589..253145 1138..1694 100 <- Minus
arm_2L 253220..253385 972..1137 100 <- Minus
arm_2L 253956..254397 85..526 100 <- Minus
arm_2L 271629..271712 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:45 Download gff for LD42056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 252589..253145 1138..1694 100 <- Minus
2L 253220..253385 972..1137 100 <- Minus
2L 253446..253890 527..971 100 <- Minus
2L 253956..254397 85..526 100 <- Minus
2L 271629..271712 1..84 100   Minus

LD42056.hyp Sequence

Translation from 102 to 1619

> LD42056.hyp
MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY
GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA
ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA
VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW
NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI
FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR
QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP
WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK
LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC
YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD
AQEPL*

LD42056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-PC 505 CG3645-PC 1..505 1..505 2721 100 Plus
CG3645-PB 505 CG3645-PB 1..505 1..505 2721 100 Plus
CG3645-PA 505 CG3645-PA 1..505 1..505 2721 100 Plus
CG10495-PA 396 CG10495-PA 26..370 31..386 359 29.2 Plus
CG1434-PB 473 CG1434-PB 25..282 29..268 266 30 Plus

LD42056.pep Sequence

Translation from 102 to 1619

> LD42056.pep
MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY
GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA
ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA
VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW
NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI
FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR
QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP
WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK
LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC
YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD
AQEPL*

LD42056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22874-PA 509 GF22874-PA 1..509 1..505 2172 81.3 Plus
Dana\GF22885-PA 513 GF22885-PA 1..485 1..484 2148 83.3 Plus
Dana\GF22896-PA 148 GF22896-PA 1..141 1..141 673 87.2 Plus
Dana\GF14697-PA 395 GF14697-PA 25..369 31..386 364 28.9 Plus
Dana\GF15959-PA 460 GF15959-PA 12..269 29..268 273 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24669-PA 505 GG24669-PA 1..505 1..505 2500 95.4 Plus
Dere\GG21157-PA 396 GG21157-PA 26..370 31..386 353 29.7 Plus
Dere\GG17837-PA 473 GG17837-PA 25..282 29..268 268 29.8 Plus
Dere\GG21206-PA 609 GG21206-PA 263..493 29..254 212 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10224-PA 503 GH10224-PA 1..497 1..504 1996 75.4 Plus
Dgri\GH11083-PA 398 GH11083-PA 25..384 31..405 367 28.9 Plus
Dgri\GH12926-PA 460 GH12926-PA 12..269 29..268 266 29.1 Plus
Dgri\GH13829-PA 582 GH13829-PA 208..466 12..254 222 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-PC 505 CG3645-PC 1..505 1..505 2721 100 Plus
CG3645-PB 505 CG3645-PB 1..505 1..505 2721 100 Plus
CG3645-PA 505 CG3645-PA 1..505 1..505 2721 100 Plus
CG10495-PA 396 CG10495-PA 26..370 31..386 359 29.2 Plus
CG1434-PB 473 CG1434-PB 25..282 29..268 266 30 Plus
CG1434-PA 473 CG1434-PA 25..282 29..268 266 30 Plus
CG10463-PA 604 CG10463-PA 258..488 29..254 198 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15082-PA 510 GI15082-PA 6..501 11..500 2007 77.8 Plus
Dmoj\GI17600-PA 397 GI17600-PA 6..320 10..314 346 31.4 Plus
Dmoj\GI14629-PA 458 GI14629-PA 11..268 29..268 267 29.5 Plus
Dmoj\GI20204-PA 614 GI20204-PA 268..498 29..254 221 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25830-PA 507 GL25830-PA 1..477 1..477 2089 83.5 Plus
Dper\GL26162-PA 398 GL26162-PA 26..372 31..386 406 31.3 Plus
Dper\GL14922-PA 463 GL14922-PA 15..272 29..268 268 29.9 Plus
Dper\GL26174-PA 577 GL26174-PA 231..461 29..254 222 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25459-PA 507 GA25459-PA 1..477 1..477 2088 83.3 Plus
Dpse\GA10353-PA 398 GA10353-PA 26..372 31..386 403 31.3 Plus
Dpse\GA26573-PA 463 GA26573-PA 15..272 29..268 268 29.9 Plus
Dpse\GA10329-PA 615 GA10329-PA 269..499 29..254 219 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16688-PA 503 GM16688-PA 1..503 1..505 2667 97.4 Plus
Dsec\GM17321-PA 316 GM17321-PA 26..300 31..303 355 33.3 Plus
Dsec\GM17665-PA 473 GM17665-PA 25..282 29..268 288 29.9 Plus
Dsec\GM17377-PA 605 GM17377-PA 225..489 6..254 219 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22975-PA 505 GD22975-PA 1..505 1..505 2692 98 Plus
Dsim\GD24181-PA 396 GD24181-PA 26..370 31..386 374 29.4 Plus
Dsim\GD17163-PA 460 GD17163-PA 12..269 29..268 290 30.2 Plus
Dsim\GD24232-PA 605 GD24232-PA 225..489 6..254 215 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17247-PA 504 GJ17247-PA 1..479 1..477 2003 78.7 Plus
Dvir\GJ17945-PA 399 GJ17945-PA 25..318 31..312 366 32.1 Plus
Dvir\GJ13589-PA 590 GJ13589-PA 244..474 29..254 205 27 Plus
Dvir\GJ19062-PA 137 GJ19062-PA 1..102 115..218 159 33.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21069-PA 519 GK21069-PA 1..488 1..485 2010 78.1 Plus
Dwil\GK14658-PA 404 GK14658-PA 30..306 31..303 354 31.1 Plus
Dwil\GK10156-PA 458 GK10156-PA 10..269 27..268 276 30.4 Plus
Dwil\GK14924-PA 579 GK14924-PA 233..463 29..254 223 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16327-PA 505 GE16327-PA 1..505 1..505 2419 92.9 Plus
Dyak\GE13230-PA 395 GE13230-PA 26..370 31..386 363 28.7 Plus
Dyak\GE17129-PA 473 GE17129-PA 25..282 29..268 280 30.2 Plus
Dyak\GE13280-PA 609 GE13280-PA 263..493 29..254 211 27 Plus